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Author SHA1 Message Date
Ricardo Wurmus
51c2fef1e2
gnu: Add r-nabor. 
* gnu/packages/cran.scm (r-nabor): New variable.
 2020-08-18 12:29:37 +02:00
Tobias Geerinckx-Rice
106014094a
gnu: ghcid: Update to 0.8.7. 
* gnu/packages/haskell-apps.scm (ghcid): Update to 0.8.7.
 2020-08-18 05:38:39 +02:00
Tobias Geerinckx-Rice
fe55ff3851
gnu: python-igraph: Update to 0.8.2. 
* gnu/packages/graph.scm (python-igraph): Update to 0.8.2.
 2020-08-18 05:38:39 +02:00
Tobias Geerinckx-Rice
2b1c4a5c52
gnu: igraph: Update to 0.8.2. 
* gnu/packages/graph.scm (igraph): Update to 0.8.2.
 2020-08-18 05:38:38 +02:00
Tobias Geerinckx-Rice
84ee898867
gnu: cfitsio: Update to 3.49. 
* gnu/packages/astronomy.scm (cfitsio): Update to 3.49.
[source]: Hard-code NAME.
 2020-08-18 05:38:38 +02:00
Tobias Geerinckx-Rice
b94cb3be2a
gnu: jc: Update to 1.13.4. 
* gnu/packages/admin.scm (jc): Update to 1.13.4.
 2020-08-18 05:38:38 +02:00
Tobias Geerinckx-Rice
01af05bf0b
gnu: blender: Update to 2.83.4. 
* gnu/packages/graphics.scm (blender): Update to 2.83.4.
 2020-08-18 05:38:38 +02:00
Maxim Cournoyer
2a20c22dcf
doc: Fix a typo in the AutoSSH service documentation. 
* doc/guix.texi (Networking Services)[autossh-configuration]: Fix typo.
 2020-08-17 15:41:21 -04:00
Nicolas Goaziou
1a9ebe3b0a
gnu: rclone: Update to 1.52.3. 
* gnu/packages/sync.scm (rclone): Update to 1.52.3.
 2020-08-17 17:33:47 +02:00
Timothy Sample
e13fefbcff
gnu: git-annex: Create fake static output. 
This is a work-around for a problem introduced by commit
718dc7d4a5.

* gnu/packages/haskell-apps.scm (git-annex)[arguments]: Add a phase
to generate the "static" output.
 2020-08-17 11:03:58 -04:00
Nicolas Goaziou
02554a58a2
gnu: fet: Update to 5.46.0. 
* gnu/packages/education.scm (fet): Update to 5.46.0.
 2020-08-17 15:23:04 +02:00
Nicolas Goaziou
c9d9ea1f92
gnu: mame: Update to 0.223. 
* gnu/packages/emulators.scm (mame): Update to 0.223.
 2020-08-17 15:05:20 +02:00
Nicolas Goaziou
accdd9dd97
gnu: emacs-clojure-mode: Update to 5.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.12.0.
[native-inputs]: Add emacs-paredit.
 2020-08-17 10:39:22 +02:00
Nicolas Goaziou
40cd24a60c
gnu: emacs-ediprolog: Update to 2.1. 
* gnu/packages/emacs-xyz.scm (emacs-ediprolog): Update to 2.1.
 2020-08-17 10:36:30 +02:00
Nicolas Goaziou
7e199d8ea7
gnu: emacs-gnuplot: Switch to Emacs build system. 
* gnu/packages/emacs-xyz.scm (emacs-gnuplot)[source]: Update URL.
[native-inputs]: Remove.
[arguments]: Remove.
[home-page]: Update URL.
[description]: Improve typography.
 2020-08-17 10:31:57 +02:00
Efraim Flashner
952a7fc893
gnu: vim: Update to 8.2.1471. 
* gnu/packages/vim.scm (vim): Update to 8.2.1471.
[arguments]: Adjust custom 'patch-absolute-paths, 'skip-failing-tests
phases for changes in the sources.
 2020-08-17 11:07:23 +03:00
Efraim Flashner
b2df3aece6
gnu: python-rpy2: Update home-page. 
* gnu/packages/statistics.scm (python-rpy2)[home-page]: Update to new
home-page.
 2020-08-17 11:07:23 +03:00
Pierre Langlois
f869ad42e4
gnu: Add emacs-fancy-battery. 
* gnu/packages/emacs-xyz.scm (emacs-fancy-battery): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-17 10:32:19 +03:00
Efraim Flashner
46886728a7
utils: Add version-major+minor+point. 
* guix/utils.scm (version-major+minor+point): New procedure.
 2020-08-17 07:57:23 +03:00
Vinicius Monego
6a1f35937a
gnu: Add python-hypercorn. 
* gnu/packages/python-web.scm (python-hypercorn): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-08-17 07:54:17 +03:00
Vinicius Monego
e87b063f4c
gnu: Add python-priority. 
* gnu/packages/python-web.scm (python-priority): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-08-17 07:52:44 +03:00
Vinicius Monego
3ede1e4d69
gnu: Add python-wsproto. 
* gnu/packages/python-web.scm (python-wsproto): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-08-17 07:46:41 +03:00
Vinicius Monego
fc9be8db2d
gnu: Add python-h11. 
* gnu/packages/python-web.scm (python-h11): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-08-17 07:45:16 +03:00
Maxim Cournoyer
aee0f559f2
gnu: guile-ssh: Update to commit 688d7f. 
Fixes <https://issues.guix.gnu.org/42740>.

* gnu/packages/ssh.scm (guile-ssh): Update to commit
688d7f3797b5155257a6c2ee4ea5084b3d8cc244.
[arguments]: Enable parallel tests.

Reported-by: Ludovic Courtès <ludo@gnu.org>
 2020-08-16 23:17:22 -04:00
Tobias Geerinckx-Rice
87257e6d37
gnu: weechat: Update to 2.9. 
* gnu/packages/irc.scm (weechat): Update to 2.9.
[arguments]: Remove obsolete test fixes.  JavaScript plugins are now
disabled by default.
 2020-08-16 23:36:27 +02:00
Tobias Geerinckx-Rice
6a513960c4
gnu: gpsd: Update to 3.21. 
* gnu/packages/gps.scm (gpsd): Update to 3.21.
 2020-08-16 23:36:27 +02:00
Tobias Geerinckx-Rice
4364d0f861
gnu: srain: Update to 1.1.2. 
* gnu/packages/irc.scm (srain): Update to 1.1.2.
 2020-08-16 23:36:27 +02:00
Tobias Geerinckx-Rice
caf4df50b1
gnu: grim: Update to 1.3.1. 
* gnu/packages/image.scm (grim): Update to 1.3.1.
 2020-08-16 23:36:27 +02:00
Tobias Geerinckx-Rice
147dae8eab
gnu: emacs-slime: Update to 2.26. 
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.26.
 2020-08-16 23:36:27 +02:00
Kei Kebreau
93d9737d2b
gnu: wxwidgets: Fix MIME type loading. 
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Add shared-mime-info.
[arguments]: Update 'refer-to-inputs phase so wxwidgets looks in the correct
directory for MIME type information.
 2020-08-16 17:31:09 -04:00
Kei Kebreau
e79fe4f675
gnu: wxmaxima: Update to 20.06.6. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.06.6.
[arguments]: Add 'patch-doc-path phase.
 2020-08-16 17:30:55 -04:00
Leo Prikler
bc549a276c
gnu: webkitgtk: Expose all font locations to the bubblewrap sandbox. 
Fixes <https://issues.guix.gnu.org/41174> and <https://issues.guix.gnu.org/42618>.

The webkitgtk library relied on by Epiphany and others uses bubblewrap to
sandbox its process.  This sandbox was only exposing fonts relative to
XDG_DATA_HOME.  Extend it so that it honors font locations specified via
XDG_DATA_DIRS as well, which is what Guix uses.

* gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/webkit.scm (webkitgtk)[source]<patches>: Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2020-08-16 16:07:47 -04:00
Jan (janneke) Nieuwenhuizen
d7d362b7dd
gnu: emacs-guix: Update to 0.5.2-58a840d067. 
This fixes several missing autoloads (for Guile 3.0).

* gnu/packages/emacs-xyz.scm (emacs-guix): Update to 0.5.2-58a840d067.
 2020-08-16 20:21:04 +02:00
Ricardo Wurmus
4d55432fd0
gnu: pigx-bsseq: Update to 0.1.2. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.2.
[inputs]: Add r-ggrepel, bwa-meth, methyldackel, multiqc, and samblaster.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
6f5530b9bc
gnu: pigx-scrnaseq: Use statically linked Pandoc. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use pandoc and
pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
ac6eba4eb4
gnu: pigx-bsseq: Use statically linked Pandoc. 
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Use pandoc and
pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
c0ad6dc976
gnu: pigx-chipseq: Use statically linked Pandoc. 
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Use pandoc and
pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
2cb9f0f2a6
gnu: pigx-rnaseq: Use statically linked Pandoc. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Use pandoc and
pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
a749dc9403
gnu: r-loo: Use pandoc and pandoc-citeproc instead of the libraries. 
* gnu/packages/cran.scm (r-loo)[inputs]: Replace ghc-pandoc with pandoc, and
ghc-pandoc-citeproc with pandoc-citeproc.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
4b3af162af
gnu: r-rstan: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-rstan)[native-inputs]: Replace ghc-pandoc with
pandoc.
 2020-08-16 15:57:27 +02:00
Ricardo Wurmus
8e596bc4ec
gnu: r-rstantools: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-rstantools)[inputs]: Replace ghc-pandoc with
pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
fe69ceda2e
gnu: r-stanheaders: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-stanheaders)[inputs]: Replace ghc-pandoc with
pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
45e6f1c6b7
gnu: r-rstanarm: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-rstanarm)[inputs]: Replace ghc-pandoc with pandoc
and ghc-pandoc-citeproc with pandoc-citeproc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
a9901b830a
gnu: r-nbconvertr: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-nbconvertr)[inputs]: Replace ghc-pandoc with
pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
8fe3ef5d5a
gnu: r-abseqr: Add pandoc-citeproc. 
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Add pandoc-citeproc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
6fa5e4aaae
gnu: r-abseqr: Use pandoc instead of ghc-pandoc. 
* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Replace ghc-pandoc with
pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
a82236c5ce
gnu: r-filematrix: Use pandoc-citeproc instead of ghc-pandoc-citeproc. 
* gnu/packages/cran.scm (r-filematrix)[native-inputs]: Replace
ghc-pandoc-citeproc with pandoc-citeproc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
3db9543e64
gnu: r-bookdown: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-bookdown)[propagated-inputs]: Replace ghc-pandoc
with pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
4713a7c978
gnu: r-rgl: Use pandoc instead of ghc-pandoc. 
* gnu/packages/cran.scm (r-rgl)[inputs]: Replace ghc-pandoc with pandoc.
 2020-08-16 15:57:26 +02:00
Ricardo Wurmus
fddbf088a8
gnu: r-bayesplot: Use pandoc instead of ghc-pandoc 
* gnu/packages/cran.scm (r-bayesplot)[inputs]: Replace ghc-pandoc with pandoc.
 2020-08-16 15:57:26 +02:00