Commit graph

136244 commits

Author SHA1 Message Date
Ricardo Wurmus
55d89a17f9
gnu: r-tricycle: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.12.0.

Change-Id: I469d3387d52cce2d443e08ca21f3c18334c7b1f1
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
7dd229853b
gnu: r-tcgabiolinks: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.32.0.

Change-Id: I8ea8c5b220a262e921bcc4448b039153d48ad5c8
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
3ea719d1bf
gnu: r-biscuiteer: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.18.0.

Change-Id: If9119ebcde80e8548df5bcd4ffab1b0dca4ca726
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
4689ba62f5
gnu: r-omnipathr: Update to 3.11.10.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.11.10.

Change-Id: I3e93662d106c84cbe611f788f2c16f5caa748fbc
2024-05-08 12:53:41 +02:00
Ricardo Wurmus
a37cf20566
gnu: r-omicade4: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.44.0.

Change-Id: Iace759b9cc18c774f8a595f5ae05aa7256078901
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
74d8555fc0
gnu: r-dmrseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.24.0.

Change-Id: Ia0a2aff28eb12c730933c81a1afe203805c51a25
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
b138e6fc5b
gnu: r-dada2: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.32.0.

Change-Id: I6e8764f77d05923b3534aff1388bf021491118fe
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
7cb5aac097
gnu: r-bsseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.40.0.

Change-Id: If2cb52db5144dd8c625d428c7a83736d0eb9ce68
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
73a75b1a72
gnu: r-biotmle: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.28.0.

Change-Id: Idd65b115b561e4069470133fdf70da803b7e463e
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
65a3deae8c
gnu: r-bioqc: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.32.0.

Change-Id: If59869b7ced6952d277b9fb45a25bd903abb9bb2
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
84047fe00d
gnu: r-bionet: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.64.0.

Change-Id: I3a66573dfe5b4a2758bea8e7af6a05b22a14b218
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
7315d4d4e1
gnu: r-bionero: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.12.0.

Change-Id: I17d7d7bab2ea647e5a49c8f8482251dac34edda2
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
3150174b01
gnu: r-biomvrcns: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.44.0.

Change-Id: I7a392cab724c7757b4e41e472fd9644031674ddb
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
65e8360b94
gnu: r-biomvcclass: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.72.0.

Change-Id: I64be6be30c5a64517cc285842b438a9bbfd9b463
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f6436cd8cc
gnu: r-mvcclass: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.78.0.

Change-Id: Ib40c3da90a3a77dbac7563eb1c3053669069325c
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
d310e9ea81
gnu: r-biomformat: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.32.0.

Change-Id: I6d789e28a5f87ed6af111c20346c388e00f75697
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f8cb2a50dc
gnu: r-biodb: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.12.0.

Change-Id: If7001f4b7fd5393a45799562d2ece279e0a60215
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
5748d5c626
gnu: r-biocthis: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.14.0.

Change-Id: I1ee87d7a43237325ee4c4d93d9f69f0c3764a13b
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
5090b976d5
gnu: r-bcrank: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-bcrank): Update to 1.66.0.

Change-Id: I33ab9ad800c550b90268e7382ca1237874ca8d86
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
a791fbd1a3
gnu: r-bbcanalyzer: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-bbcanalyzer): Update to 1.34.0.

Change-Id: I14da55ec9487fe641aac8e7e85708253afc1bc83
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
856c5c775f
gnu: r-baynorm: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-baynorm): Update to 1.22.0.

Change-Id: I49339ce8e370d45a1c2b018d14dc38a2ce1a8fef
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
019b2f05a3
gnu: r-bayesspace: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.14.0.

Change-Id: Id08d540943a7821eba58dbfd933cc1efb30059aa
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
92383b27d6
gnu: r-bayesknockdown: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bayesknockdown): Update to 1.30.0.

Change-Id: I02fd2b4f87eca8e9ef6446a05f1b17445b37698c
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
a088ccde60
gnu: r-basilisk: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.16.0.

Change-Id: I48bf7fef391d1025cc348b6f76538523c4adb1e8
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
4cf075578a
gnu: r-basilisk-utils: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.16.0.

Change-Id: I4c6a737383c616b990a880848edfae7fec2d0ee5
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
a6a6760a3e
gnu: r-basicstarrseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-basicstarrseq): Update to 1.32.0.

Change-Id: I282493d98bc9d765ac29a28c58bc6531b0153dd5
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f5ac7b45a1
gnu: r-basics: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-basics): Update to 2.16.0.

Change-Id: Ie3d41d7d58bc45d9e95379d0d1523e21e09009e0
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
f01e5511a2
gnu: r-basic4cseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-basic4cseq): Update to 1.40.0.

Change-Id: Idba4d11fc6def781e93c7d575c93f09c546e3170
2024-05-08 12:53:40 +02:00
Ricardo Wurmus
03d957d0db
gnu: r-dir-expiry: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.12.0.

Change-Id: I5d75a7d3e56963c653d20b3c9cce8023b76306ac
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
d80573f55e
gnu: r-genetclassifier: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.44.0.

Change-Id: I750ee3bacbf9e819ef0853a3f951f4f32ab7b77e
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
249598455d
gnu: r-minet: Update to 3.62.0.
* gnu/packages/bioconductor.scm (r-minet): Update to 3.62.0.

Change-Id: I2519b6e7526c481bf58f2ba75b2e0a1381f41679
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
581f74075e
gnu: r-biobtreer: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.16.0.

Change-Id: I8917872cb9e42225fa69750d50b66c745810c58d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
736fcfd110
gnu: r-bgeedb: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.30.0.

Change-Id: I61720c75925a44f1c6e8c94d8ca18271005a662c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
ffb3969e8a
gnu: r-beclear: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.20.0.

Change-Id: I16ff50c678cf7e56002083f8e9c1eec3053354d1
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6aed2982ec
gnu: r-megadepth: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.14.0.
[inputs]: Remove megadepth.

Change-Id: Ia0fc8a1e7266a996249f04447eabf9cf86b00f07
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
3f806f9667
gnu: r-ballgown: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.36.0.

Change-Id: Ia60e45a814c4f6bb873b25a7e959b593fcdebb0d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
531842c537
gnu: r-guitar: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.20.0.

Change-Id: Ic9bb33324aac858f5fc056cf0fe393f7031c949e
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
7579df216b
gnu: r-chromstar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.30.0.

Change-Id: Id729863b51653a14a0e30558065d69dc14df375e
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6cf9da8ff3
gnu: r-snpstats: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.54.0.

Change-Id: Iea939d944d7574c4da573e2d84b43850dc204762
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
50df6f88e3
gnu: r-snprelate: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.38.0.

Change-Id: Ic7b56fc80e6983ee4f86a2de43ad1f831584911f
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
38f7662dc5
gnu: r-pathview: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.44.0.

Change-Id: I1b186e58ff9116f403295122f02e03b018de0f1c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
9a0b026184
gnu: r-parody: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-parody): Update to 1.62.0.

Change-Id: I558464136d242e6e6d62974b2b8df324faf5c0f2
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6a5fa34dc1
gnu: r-ldblock: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.34.0.

Change-Id: Ia0a9b517faf126ad075b099ed407a8a233080b2a
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
3245af8e57
gnu: r-kegggraph: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.64.0.

Change-Id: I1919e5f27747edc745a7e0c65c71d0126e63bde8
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
a0e8a21ef2
gnu: r-gwastools: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.50.0.

Change-Id: Id076c41a4f2f189af0df10f90ed72a5a69154a68
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6a24c29ef6
gnu: r-gwascat: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.36.0.

Change-Id: I476740369af4d527f94adc2f06c9af354d49b6fc
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
305ee43427
gnu: r-gviz: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.48.0.

Change-Id: I68a479de59a531aa8ab7b376a69a1766fddeea7d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
59a8eb9d88
gnu: r-ggbio: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.52.0.

Change-Id: I45c0988944ecdc2dc88f7638723a7fe25e6fcec5
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
f2e5f38824
gnu: r-erma: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.20.0.

Change-Id: Ic80ebff0510de24ed5bf8afbf199c06489e7a3f5
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
0a81d3c584
gnu: r-catalyst: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.28.0.

Change-Id: Ic2373881717e43db043347438c7801f4b3d3f7ad
2024-05-08 12:53:39 +02:00