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Author SHA1 Message Date
Ricardo Wurmus
579f31b517
gnu: r-processx: Update to 3.8.2. 
* gnu/packages/cran.scm (r-processx): Update to 3.8.2.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
e6fe82b26b
gnu: r-gss: Update to 2.2-5. 
* gnu/packages/cran.scm (r-gss): Update to 2.2-5.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
e261244e7f
gnu: r-mice: Update to 3.16.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.16.0.
[propagated-inputs]: Add r-glmnet, r-mitml, r-nnet, and r-rpart.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
fde0293e71
gnu: r-pan: Update to 1.8. 
* gnu/packages/cran.scm (r-pan): Update to 1.8.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
66d6467f6c
gnu: r-broom: Update to 1.0.5. 
* gnu/packages/cran.scm (r-broom): Update to 1.0.5.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
40fb5a1f4c
gnu: r-psych: Update to 2.3.6. 
* gnu/packages/cran.scm (r-psych): Update to 2.3.6.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
64d4396288
gnu: r-emdbook: Update to 1.3.13. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.13.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
2ba310e2af
gnu: r-sp: Update to 2.0-0. 
* gnu/packages/cran.scm (r-sp): Update to 2.0-0.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
551e46d290
gnu: r-ctrdata: Update to 1.13.3. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.13.3.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
96e895f6ea
gnu: r-rcppthread: Update to 2.1.5. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.5.
[native-inputs]: Add r-r-rsp.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
5f609dc440
gnu: r-rcppspdlog: Update to 0.0.13. 
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.13.
 2023-07-12 14:29:04 +02:00
Ricardo Wurmus
b4c0815613
gnu: r-rcpp: Update to 1.0.11. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.11.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
2481363f9f
gnu: r-pkgload: Update to 1.3.2.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.2.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
f40b72c9c1
gnu: r-pkgbuild: Update to 1.4.2. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.2.
[propagated-inputs]: Remove r-withr.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
27173e7545
gnu: r-ggtern: Update to 3.4.2. 
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.2.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
e7e8ef4c4c
gnu: r-fastdummies: Update to 1.7.3. 
* gnu/packages/cran.scm (r-fastdummies): Update to 1.7.3.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
90af9e7b2d
gnu: r-curl: Update to 5.0.1. 
* gnu/packages/cran.scm (r-curl): Update to 5.0.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
3f24044d91
gnu: r-jsonlite: Update to 1.8.7. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.7.
[native-inputs]: Add r-r-rsp.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
a71b693379
gnu: r-readxl: Update to 1.4.3. 
* gnu/packages/cran.scm (r-readxl): Update to 1.4.3.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
be7139e592
gnu: r-ecp: Update to 3.1.5. 
* gnu/packages/cran.scm (r-ecp): Update to 3.1.5.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
00db622370
gnu: r-ggpmisc: Update to 0.5.3. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.3.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
8825d76885
gnu: r-googlesheets4: Update to 1.1.1. 
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.1.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
44e149cfaa
gnu: r-googledrive: Update to 2.1.1. 
* gnu/packages/cran.scm (r-googledrive): Update to 2.1.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
1d6792cf83
gnu: r-datawizard: Update to 0.8.0. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.8.0.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
bb570c1534
gnu: r-ggpicrust2: Update to 1.7.1. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.1.
[propagated-inputs]: Remove r-phyloseq; add r-ggh4x.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
d669b30658
gnu: r-scistreer: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scistreer): Update to 1.2.0.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
5f8104b3a4
gnu: r-numbat: Update to 1.3.2-1. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.2-1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
347e3b1b75
gnu: r-biomartr: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.4.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
49fe6b3d66
gnu: apache-arrow: Update to 12.0.1. 
* gnu/packages/databases.scm (apache-arrow): Update to 12.0.1.
 2023-07-12 14:29:03 +02:00
Ricardo Wurmus
abd0c1b29d
gnu: r-mlr3: Update to 0.16.1. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.16.1.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
66e988201d
gnu: r-igraph: Update to 1.5.0. 
* gnu/packages/cran.scm (r-igraph): Update to 1.5.0.
[propagated-inputs]: Add r-cli.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
56b8a26951
gnu: r-terra: Update to 1.7-39. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-39.
[inputs]: Add curl, openssh, openssl, and pcre2.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
5dea2079b1
gnu: r-leidenalg: Update to 1.1.0. 
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.0.
[properties]: Add hint for updater to keep gmp as input.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
5aca0cd1e3
gnu: Add r-envstats. 
* gnu/packages/cran.scm (r-envstats): New variable.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
64b18f3282
gnu: r-gmp: Update to 0.7-2. 
* gnu/packages/cran.scm (r-gmp): Update to 0.7-2.
[arguments]: Remove obsolete build phase.
[properties]: Tell updater that "gmp" is an extra input.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
2c04ca3de0
gnu: r-haven: Update to 2.5.3. 
* gnu/packages/cran.scm (r-haven): Update to 2.5.3.
[properties]: Declare readstat as an extra input.
[native-inputs]: Add pkg-config.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
95a4fc7e9c
gnu: r-gprofiler2: Update to 0.2.2. 
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.2.
[native-inputs]: Add r-rmarkdown.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
1223a87a14
gnu: r-v8: Update to 4.3.2. 
* gnu/packages/cran.scm (r-v8): Update to 4.3.2.
[properties]: Declare libnode as an extra input, not an ignored input.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
1b09d2e9ae
gnu: r-lme4: Update to 1.1-34. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-34.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
138d0dd9ad
gnu: r-digest: Update to 0.6.33. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.33.
[native-inputs]: Add r-simplermarkdown.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
febe08ee8a
import/cran: Add one more package name transformation. 
* guix/import/cran.scm (transform-sysname): Add entry for "zlib-devel".
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
60c70a9009
gnu: r-plotly: Update to 4.10.2. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.2.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
7c2290f663
gnu: r-opencpu: Update to 2.2.10. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.10.
[properties]: Add hints for updater.
 2023-07-12 14:29:02 +02:00
Ricardo Wurmus
cca7d7ea4c
gnu: r-rgl: Update to 1.2.1. 
* gnu/packages/cran.scm (r-rgl): Update to 1.2.1.
[properties]: Tell updater to not remove glu and libx11.
 2023-07-12 14:29:01 +02:00
Ricardo Wurmus
2680ec55ff
gnu: r-bslib: Update to 0.5.0. 
* gnu/packages/cran.scm (r-bslib): Update to  0.5.0.
[source]: Delete minified JavaScript for components.
[arguments]: Update 'process-javascript phase to generate components from
source.
[native-inputs]: Add typescript-components.
 2023-07-12 14:29:01 +02:00
Ricardo Wurmus
b43841c124
refresh: Sort update specs by package location. 
Fixes <https://issues.guix.gnu.org/64358>.

* guix/scripts/refresh.scm (guix-refresh): Sort update specs by location from
bottom to top before updating packages.
 2023-07-12 14:29:01 +02:00
jgart
4a027d2b0e
gnu: rr: Fix typo in synopsis. 
* gnu/packages/debug.scm (rr)
[synopsis]: Fix typo.
 2023-07-11 22:43:35 -05:00
jgart
cf3bd63b06
gnu: keepassxc: Fix broken home-page url. 
* gnu/packages/password-utils.scm (keepassxc): Fix broken url.
[home-page]: Fix broken url.
 2023-07-11 22:43:05 -05:00
Zhu Zihao
b5baa98053
gnu: nix: Update to 2.16.1. 
* gnu/packages/package-management.scm (nix): Update to 2.16.1.
[source]: Use HTTPS for package source.
[inputs]: Add nlohmann-json.
[native-inputs]: Add rapidcheck.
[arguments]<#:phases>: In phase "check", change the value of environment
variable  "NIX_STORE" to "/nix/store" temporarily.

* gnu/packages/patches/nix-dont-build-html-doc.diff: Update.

Co-authored-by: jgart <jgart@dismail.de>
 2023-07-11 22:28:52 -05:00
Zhu Zihao
38f050193b
gnu: Add rapidcheck. 
* gnu/packages/check.scm (rapidcheck): New variable.
 2023-07-11 21:39:35 -05:00