Ricardo Wurmus
309f042a29
gnu: r-gbm: Update to 2.1.9.
...
* gnu/packages/cran.scm (r-gbm): Update to 2.1.9.
Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f
2024-01-11 11:45:22 +01:00
Ricardo Wurmus
7ed2a46a3d
gnu: r-yulab-utils: Update to 0.1.3.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3.
Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930
2024-01-11 11:45:21 +01:00
Ricardo Wurmus
3f37d72acb
gnu: r-compositions: Update to 2.0-7.
...
* gnu/packages/cran.scm (r-compositions): Update to 2.0-7.
Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813
2024-01-11 11:45:21 +01:00
Ricardo Wurmus
2e7f7b8a2f
gnu: r-targets: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-targets): Update to 1.4.1.
Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d
2024-01-11 11:45:21 +01:00
Ricardo Wurmus
ab144d871b
gnu: r-tarchetypes: Update to 0.7.11.
...
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11.
Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead
2024-01-11 11:45:21 +01:00
Ricardo Wurmus
5a655bab8f
gnu: r-writexls: Update to 6.5.0.
...
* gnu/packages/cran.scm (r-writexls): Update to 6.5.0.
Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a
2024-01-11 11:45:20 +01:00
Ricardo Wurmus
10f25e5e73
gnu: r-ggrepel: Update to 0.9.5.
...
* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5.
Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb
2024-01-11 11:45:20 +01:00
Ricardo Wurmus
b6b6465da3
gnu: r-rcpp: Update to 1.0.12.
...
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.12.
Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc
2024-01-11 11:45:20 +01:00
Ricardo Wurmus
7e9cdd4a0b
gnu: r-glue: Update to 1.7.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.7.0.
Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561
2024-01-11 11:45:20 +01:00
Ricardo Wurmus
273ce26a8c
gnu: r-reprex: Update to 2.1.0.
...
* gnu/packages/cran.scm (r-reprex): Update to 2.1.0.
Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6
2024-01-11 11:45:19 +01:00
Ricardo Wurmus
16aa6d4fc3
gnu: r-astsa: Update to 2.1.
...
* gnu/packages/cran.scm (r-astsa): Update to 2.1.
Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1
2024-01-11 11:45:19 +01:00
Ricardo Wurmus
2383da330d
gnu: r-ggpp: Update to 0.5.6.
...
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.6.
Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928
2024-01-11 11:45:19 +01:00
Ricardo Wurmus
e007e93b63
gnu: r-zcompositions: Update to 1.5.0-1.
...
* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1.
Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac
2024-01-11 11:45:19 +01:00
Ricardo Wurmus
5d855222a4
gnu: r-castor: Update to 1.8.0.
...
* gnu/packages/cran.scm (r-castor): Update to 1.8.0.
[propagated-inputs]: Add r-jsonlite.
Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
2024-01-11 11:45:18 +01:00
Ricardo Wurmus
1f37c81400
gnu: r-rcurl: Update to 1.98-1.14.
...
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14.
[native-inputs]: Move libxml2 from here...
[inputs]: ...to here.
Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
2024-01-11 11:44:33 +01:00
Ricardo Wurmus
1f452641c5
gnu: r-rstan: Update to 2.32.5.
...
* gnu/packages/cran.scm (r-rstan): Update to 2.32.5.
[properties]: Tell updater to leave tzdata-for-tests.
Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
2024-01-11 11:43:51 +01:00
Ricardo Wurmus
10be2ba0e5
gnu: r-topicmodels: Update to 0.2-16.
...
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16.
[properties]: Tell updater not to remove GSL from inputs.
Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
2024-01-11 11:32:01 +01:00
Ricardo Wurmus
5e7d139461
gnu: r-rpostgresql: Update to 0.7-6.
...
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6.
[properties]: Tell updater not to remove postgresql input.
Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
2024-01-11 11:18:06 +01:00
Ricardo Wurmus
b52234c016
gnu: r-readr: Update to 2.1.5.
...
* gnu/packages/statistics.scm (r-readr): Update to 2.1.5.
Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
2024-01-11 11:15:18 +01:00
Ricardo Wurmus
6341dddcb9
gnu: python-afdko: Disable failing test.
...
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable
test_alt_missing_glyph.
Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
2024-01-11 08:09:38 +01:00
Guillaume Le Vaillant
f122f2bead
gnu: sbcl: Fix riscv build.
...
* gnu/packages/patches/sbcl-fix-riscv-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/lisp.scm (sbcl)[source]: Use it.
Change-Id: I63f1b9a7a7b6f3a1961d0a0cb31189b74a60abc3
2024-01-10 22:57:43 +01:00
Ricardo Wurmus
3bf2465faa
gnu: openjdk11: Fix time bomb in ‘GenerateCurrencyData.java’.
...
Fixes <https://issues.guix.gnu.org/68333 >, as well.
This is a companion to commit 5c0f77f424
2024-01-10 22:26:23 +01:00
Ricardo Wurmus
d255944400
gnu: openjdk10: Simplify.
...
* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build
phase.
Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
2024-01-10 22:10:15 +01:00
Ricardo Wurmus
fc891f004a
gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’.
...
Fixes <https://issues.guix.gnu.org/68333 >, as well.
This is a companion to commit 5c0f77f424
2024-01-10 22:09:49 +01:00
Ricardo Wurmus
a252ab6f88
gnu: Fix patch location.
...
This is a follow-up to commit db7488a7fb
2024-01-10 22:07:57 +01:00
Ricardo Wurmus
cf11f07588
gnu: openjdk9: Simplify.
...
* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN.
[arguments]: Delete trailing #T from build phases.
Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
2024-01-10 21:54:16 +01:00
Ricardo Wurmus
db7488a7fb
gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.
...
Fixes <https://issues.guix.gnu.org/68333 >, as well.
This is a companion to commit 5c0f77f424
2024-01-10 21:52:33 +01:00
Ricardo Wurmus
6c453e04b8
gnu: python-distributed: Disable breaking test.
...
This test times out since the merge of the mesa-updates branch.
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.
Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
2024-01-10 20:35:28 +01:00
nafkhamdc
c1fda6cf61
gnu: Add r-jaspar2020.
...
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10 18:39:13 +01:00
nafkhamdc
feab3943c1
gnu: Add r-dsb.
...
* gnu/packages/bioconductor.scm (r-dsb): New variable.
Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10 18:39:13 +01:00
nafkhamdc
db75afb4c5
gnu: r-signac: Update to 1.12.0-1.8ecdde2.
...
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2.
Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
2024-01-10 18:39:13 +01:00
nafkhamdc
2ec29a8c11
gnu: Add r-escape.
...
* gnu/packages/bioconductor.scm (r-escape): New variable.
Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-10 18:39:13 +01:00
Ricardo Wurmus
6688e9f4bd
gnu: Add python-telomerecat.
...
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable.
Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
2024-01-10 18:39:13 +01:00
Ricardo Wurmus
16a277e0a9
gnu: Add python-parabam.
...
* gnu/packages/bioinformatics.scm (python-parabam): New variable.
Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
2024-01-10 18:39:13 +01:00
Ludovic Courtès
5c0f77f424
gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’.
...
Fixes <https://issues.guix.gnu.org/68333 >.
* gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’
parameter and honor it.
[native-inputs]: Add patch for “jdk-drop”.
(icedtea-8): Likewise.
* gnu/packages/patches/jdk-currency-time-bomb.patch,
gnu/packages/patches/jdk-currency-time-bomb2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
2024-01-10 16:42:03 +01:00
Zheng Junjie
a126e8120d
gnu: mesa: Fix cross-compilation.
...
* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force
the use of the cmake method to find llvm.
Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10 15:29:11 +01:00
Zheng Junjie
6401efb554
gnu: yaml-cpp: Update to 0.8.0.
...
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0.
Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10 15:25:45 +01:00
Guillaume Le Vaillant
749c3e016a
Merge branch 'master' into lisp-team
...
Change-Id: I6c2ce53e782a00861c3adf01c2505099daef7728
2024-01-10 14:04:40 +01:00
Andre A. Gomes
537768018e
gnu: Add cl-stripe.
...
* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7
2024-01-10 10:53:01 +01:00
Andre A. Gomes
d34fe10018
gnu: nyxt: Update to 3.11.0.
...
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-01-10 10:13:42 +01:00
Andre A. Gomes
d8ddf42712
gnu: cl-prompter: Update to 0.1.1-0.7890ed5.
...
* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8
2024-01-10 10:09:56 +01:00
Maxim Cournoyer
e541f9593f
Authorize Oleg (Sharlatan)'s key.
...
* .guix-authorizations (sharlatan): Register PGP key fingerprint.
Change-Id: I0d20e50a37971237721964852a404c5cf136f0be
2024-01-09 23:08:17 -05:00
Maxim Cournoyer
58ab25a2ce
tests: telephony: Fix typo.
...
* gnu/tests/telephony.scm: Fix typo.
Series-to: 65371@debbugs.gnu.org
Series-postfix: telephony-team
Series-version: 2
Change-Id: I3eb048b8cdd1335c45ffb61b08425a18a2e7a4b2
2024-01-09 22:10:14 -05:00
Wojtek Kosior
693a4785be
tests: telephony: Fix VPATH builds.
...
* gnu/tests/telephony.scm (%jami-account-content-sexp): New variable. Compute
its value with `read` instead of using `include`.
* gnu/tests/data/jami-dummy-account.dat (%jami-account-content-sexp): Remove
variable. Make the file contain just the S-expression.
Change-Id: I8d37aaf7b739f5f39715bfb8a9b8c9536385fd09
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-01-09 22:10:13 -05:00
Maxim Cournoyer
c5fb46685f
gnu: jami-docs: Update to 0.0.0-2.a48997d.
...
* gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d.
Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e
2024-01-09 22:10:13 -05:00
Maxim Cournoyer
8237f4e997
gnu: jami: Update to 20231222.2.
...
* gnu/packages/jami.scm (%jami-version): Rename to...
(%jami-nightly-version): ... this. Update to 20231222.2.
(%jami-daemon-commit): New variable.
(%jami-sources): Delete variable.
(libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit.
[source]: Fetch from git. Apply libjami-ac-config-files.patch.
[arguments] <make-flags>: Skip ut_media_player test.
<phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout
phases.
[inputs]: Replace dbus-c++ with sdbus-c++.
Add dhtnet. Replace libgit2 with libgit2-1.6.
(jami): Set version to %jami-nightly-version.
[source]: Fetch from git. Apply new jami-qml-tests-discovery.patch,
jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch
patches.
[arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF.
<phases>: Delete change-directory/maybe.
Adjust check phase. Add fake-x11-environment,
copy-3rdparty-source-dependencies and disable-problematic-tests phases.
[inputs]: Add md4c and tidy-html.
* gnu/packages/patches/jami-qml-tests-discovery.patch: New file.
* gnu/packages/patches/libjami-ac-config-files.patch: Likewise.
* gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise.
* gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise.
* gnu/packages/patches/jami-libjami-headers-search.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch.
Series-changes: 2
- Update Jami to latest nightly version (20231222.2)
Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae
2024-01-09 22:10:13 -05:00
Maxim Cournoyer
d9c9b97e93
gnu: Add sortfilterproxymodel.
...
* gnu/packages/jami.scm (sortfilterproxymodel): New variable.
Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287
2024-01-09 22:10:13 -05:00
Maxim Cournoyer
de002b93db
gnu: ffmpeg-jami: Relocate to (gnu packages video).
...
To avoid Guile module dependency cycles, inherited packages must be defined in
the same module. Use this opportunity to simplify the patches applying
mechanism, versioning custom patches the same as for other packages.
* gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file.
* gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch:
Likewise.
* gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise.
* gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure.
(%ffmpeg-default-configure-flags): Delete variable.
(ffmpeg-compose-configure-flags): Delete procedure.
(ffmpeg-jami): Move to...
* gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and
repatriate configure flags.
Change-Id: Id374fae18240cd76b224915d80b61422635ccb77
2024-01-09 22:10:12 -05:00
Maxim Cournoyer
5a38120c67
gnu: ffmpeg-jami: Update configure flags.
...
* gnu/packages/jami.scm (%ffmpeg-default-configure-flags): Add new flags.
Change-Id: I1bac70e7b0ec58c46348a7138f7260b40cdf79f8
2024-01-09 22:10:12 -05:00
Maxim Cournoyer
202b16e31a
gnu: pjproject-jami: Update and relocate.
...
* gnu/packages/jami.scm (pjproject-jami): Move to...
* gnu/packages/telephony.scm (pjproject-jami): ... here. Update to latest
commit.
[arguments]: Use same configure flags as done in Jami/DhtNet projects.
Change-Id: I638364ebc94f17762ee072311b5fe439b7c6f837
2024-01-09 22:10:12 -05:00
