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Author SHA1 Message Date
Marius Bakke
b28a33512f
gnu: Add sqlite-3.15.1. 
* gnu/packages/databases.scm (sqlite-3.15.1): New variable.
 2016-11-20 17:46:32 +01:00
Nicolas Goaziou
43ffe220c8
gnu: lilypond: Update to 2.19.51. 
* gnu/packages/music.scm (lilypond): Update to 2.19.51.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-20 17:46:21 +01:00
Leo Famulari
25291aca74
gnu: python-icalendar: Update to 3.11. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.
 2016-11-20 11:22:27 -05:00
Leo Famulari
764c566221
gnu: gnupg: Update to 2.1.16. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.16.
[arguments]: Remove obsolete substitution from 'patch-paths' phase.
Remove 'set-home' phase. Add 'set-gnupg-home' phase.
 2016-11-19 23:43:32 -05:00
宋文武
9fff9e6484
gnu: gtk-engines: Don't propagate GTK+. 
* gnu/packages/gtk.scm (gtk-engines): Move gtk+ to 'inputs'.
 2016-11-20 12:02:04 +08:00
Mark H Weaver
5a1ef07d3e
gnu: linux-libre: Update to 4.8.9. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.9.
 2016-11-19 22:29:38 -05:00
Mark H Weaver
13172f0d79
gnu: linux-libre@4.4: Update to 4.4.33. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.33.
 2016-11-19 22:28:07 -05:00
Ben Woodcroft
9b62c5a8fb
gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900]. 
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.2): New variable.
 2016-11-20 11:38:12 +10:00
Ludovic Courtès
966a543b36
gnu: Use 'mirror://' URLs in several places. 
* gnu/packages/emacs.scm (m17n-lib)[source]: Use 'mirror://'.
* gnu/packages/games.scm (extremetuxracer)[source]: Likewise.
* gnu/packages/gcc.scm (%gcc-infrastructure): Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[source]: Likewise.
* gnu/packages/perl.scm (perl)[source]: Likewise.
* gnu/packages/telephony.scm (exosip)[source]: Likewise.
* gnu/packages/wm.scm (xmonad)[source]: Likewise.
(ghc-xmonad-contrib)[source]: Likewise.
 2016-11-19 18:44:54 +01:00
Ricardo Wurmus
18675264c6
gnu: Add samplv1. 
* gnu/packages/music.scm (samplv1): New variable.
 2016-11-19 17:54:50 +01:00
Ricardo Wurmus
cf9af706fb
gnu: Add drumkv1. 
* gnu/packages/music.scm (drumkv1): New variable.
 2016-11-19 17:54:50 +01:00
Leo Famulari
2fedcd1895
gnu: libtiff: Fix CVE-2016-9448. 
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-19 11:31:00 -05:00
Leo Famulari
b7e0f65b40
gnu: imagemagick: Update to 6.9.6-5. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-5.
 2016-11-19 10:48:51 -05:00
Rene Saavedra
3446ffb57c
gnu: gnome-control-center: Add gdk-pixbuf input. 
* gnu/packages/gnome.scm (gnome-control-center)[inputs]: Add gdk-pixbuf.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-19 10:38:01 -05:00
ng0
8f49395064
gnu: Add emacs-danneskjold-theme. 
* gnu/packages/emacs.scm (emacs-danneskjold-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 21:31:20 +08:00
ng0
5cd4129221
gnu: emacs-cyberpunk-theme: Update to 1.18. 
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): Update to 1.18.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 20:19:03 +08:00
Nicolas Goaziou
fd057b84ec
gnu: emacs-org: Update to 20161118. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161118.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 20:09:50 +08:00
宋文武
ae1e2133b9
gnu: opensmtpd: Correct CA certificates file path. 
* gnu/packages/mail.scm (opensmtpd)[arguments]: Pass
'--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt' to #:configure-flags.
 2016-11-19 19:19:16 +08:00
Ricardo Wurmus
cfcef2c2ac
gnu: gx-switchless-wah-lv2: Update to 0-2.7b0869120. 
* gnu/packages/music.scm (gx-switchless-wah-lv2): Update to
0-2.7b0869120.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
8e6f6503f0
gnu: gx-slow-gear-lv2: Update to 0-2.cb852e042. 
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-2.cb852e042.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
a7cd2d44e1
gnu: gx-vintage-fuzz-master-lv2: Update to 0-2.0fec0bc1e. 
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): Update to
0-2.0fec0bc1e.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
1df4d85f8b
gnu: gx-super-fuzz-lv2: Update to 0-2.f40389575. 
* gnu/packages/music.scm (gx-super-fuzz-lv2): Update to 0-2.f40389575.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
c1802b0834
gnu: gx-voodoo-fuzz-lv2: Update to 0-2.aec7889b4. 
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): Update to 0-2.aec7889b4.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
dad6cb50da
gnu: gx-hyperion-lv2: Update to 0-2.6a096a664. 
* gnu/packages/music.scm (gx-hyperion-lv2): Update to 0-2.6a096a664.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
31de5e2244
gnu: gx-saturator-lv2: Update to 0-2.0b581ac85. 
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-2.0b581ac85.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
4ed4bb11cb
gnu: qsynth: Update to 0.4.3. 
* gnu/packages/audio.scm (qsynth): Update to 0.4.3.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
f2bd238bcd
gnu: synthv1: Update to 0.8.0. 
* gnu/packages/music.scm (synthv1): Update to 0.8.0.
 2016-11-19 11:26:15 +01:00
Nicolas Goaziou
2c453091e4
gnu: wireshark: Update to 2.2.2. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.2.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 16:33:55 +08:00
Nicolas Goaziou
ce53f5cbf0
gnu: giac-xcas: Update to 1.2.2-103 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-103.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 16:28:58 +08:00
Muriithi Frederick Muriuki
6689c636d0
gnu: Add ruby-net-http-digest-auth. 
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): New variable.
 2016-11-19 15:16:19 +10:00
Ben J Woodcroft
4af80275a8
gnu: ruby-2.2: Update to 2.2.6. 
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.6.
 2016-11-19 07:48:01 +10:00
ng0
175d626478
gnu: mps-youtube: Disable tests. 
* gnu/packages/video.scm (mps-youtube): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-18 15:16:48 -05:00
ng0
ed3fee5f7b
gnu: python-pafy: Disable tests. 
* gnu/packages/python.scm (python-pafy): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-18 15:16:48 -05:00
Petter
01278f16a9
gnu: Add xcalib. 
* gnu/packages/xdisorg (xcalib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-18 15:05:59 -05:00
Ludovic Courtès
c2662820f3
gnu: emacs-org: Update to 20161102. 
* gnu/packages/emacs.scm (emacs-org)[source]: Switch to elpa.gnu.org so
'guix refresh' can pick it up.  Update to 20161102.
 2016-11-18 18:28:03 +01:00
Ludovic Courtès
8134dc1f74
gnu: guile@2.0.13: Fix non-determinism issue in REPL server test. 
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
 2016-11-18 18:28:02 +01:00
Danny Milosavljevic
651049789f
gnu: xonsh: Update to 0.4.7. 
* gnu/packages/shells.scm (xonsh): Update to 0.4.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-18 17:02:30 +01:00
宋文武
d7da76044b
gnu: opensmtpd: Build man pages. 
* gnu/packages/mail.scm (opensmtpd)[native-inputs]: Add groff.
 2016-11-18 22:19:49 +08:00
Efraim Flashner
4d17fe2ad3
gnu: python-gst: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.10.1.
 2016-11-18 14:26:40 +02:00
Efraim Flashner
950548b0f7
gnu: gst-libav: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.1.
 2016-11-18 14:26:40 +02:00
Efraim Flashner
2e747a3ff6
gnu: gst-plugins-ugly: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.1.
 2016-11-18 14:26:39 +02:00
Efraim Flashner
95e89a4510
gnu: gst-plugins-bad: Update to 1.10.1 (Fixes security issues). 
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.1.
 2016-11-18 14:26:39 +02:00
Efraim Flashner
faa3c13920
gnu: gst-plugins-good: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.1.
 2016-11-18 10:01:29 +02:00
Efraim Flashner
de0e591a53
gnu: gst-plugins-base: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.1.
 2016-11-18 10:01:29 +02:00
Efraim Flashner
28e3663134
gnu: gstreamer: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.1.
 2016-11-18 10:01:17 +02:00
Leo Famulari
175c910380
gnu: mpop: Use 'sourceforge' mirror. 
This is a followup to commit 5837e69936.

* gnu/packages/mail.scm (mpop)[source]: Use 'sourceforge' mirror.
 2016-11-17 15:56:06 -05:00
Arun Isaac
5837e69936
gnu: mpop: Update to 1.2.6. 
* gnu/packages/mail.scm (mpop): Update to 1.2.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-17 17:45:38 +01:00
Efraim Flashner
e5294500d6
gnu: obs: Update to 0.16.5. 
* gnu/packages/video.scm (obs): Update to 0.16.5.
 2016-11-17 07:26:20 +02:00
Efraim Flashner
ca569eb89f
gnu: aria2: Update to 1.29.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.29.0.
 2016-11-17 07:26:20 +02:00
Mark H Weaver
2f63e087fe
Revert "gnu: icecat: Enable gtk3 support." 
This reverts commit eaf72e218e.

IceCat misbehaves with gtk+3, most notably the scroll bar handles are
invisible.  Here we revert back to gtk+2 until these problems can be
addressed.
 2016-11-16 22:34:11 -05:00
Eric Bavier
fe047e1380
gnu: Add Handbrake. 
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-16 20:58:12 -06:00
Leo Famulari
1339a8ed1c
gnu: libtiff: Fix some buffer overflows. 
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-16 19:59:28 -05:00
Leo Famulari
7cea56e2ac
gnu: libtiff: Fix CVE-2016-9297. 
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-16 19:59:24 -05:00
Efraim Flashner
d87c201f96
gnu: jasper: Update to 1.900.29. 
* gnu/packages/image.scm (jasper): Update to 1.900.29.
[inputs]: Add libjpeg.
 2016-11-16 22:06:33 +02:00
Mark H Weaver
9cdb405b81
gnu: icecat: Remove unneeded patch. 
This is a followup to commit 1a87aa7567.

* gnu/packages/gnuzilla.scm (icecat)[sources][patches]: Remove patch for
CVE-2016-5296, which is for a bundled copy of pixman that is
subsequently deleted by a snippet.
 2016-11-16 14:14:25 -05:00
Marius Bakke
d3e5dc0a44
gnu: perl-dbd-mysql: Update to 4.039 [Fixes CVE-2016-1249]. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.039.
[source]: Update CPAN URI.
 2016-11-16 18:33:57 +00:00
Leo Famulari
1d87fdf531
gnu: ncmpcpp: Update to 0.7.7. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.7.
 2016-11-16 13:09:36 -05:00
Leo Famulari
0ffa8b8e7b
gnu: shotwell: Update to 0.25.0.1. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.1.
 2016-11-16 13:09:36 -05:00
Mark H Weaver
1a87aa7567
gnu: icecat: Add fixes from Firefox ESR 45.5.0. 
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.

* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0.  Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-16 13:04:02 -05:00
Mark H Weaver
56ac2bf442
gnu: pixman: Add fix for CVE-2016-5296. 
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
 2016-11-16 13:03:56 -05:00
宋文武
eb4b3e4bef
gnu: opensmtpd: Update to 6.0.2p1. 
* gnu/packages/mail.scm (opensmtpd): Update to 6.0.2p1.
[arguments]: Pass '--with-path-sock=/var/run' to #:configure-flags.
 2016-11-16 21:00:40 +08:00
Mark H Weaver
d55019136e
gnu: linux-libre: Update to 4.8.8. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.8.
 2016-11-16 00:08:19 -05:00
Mark H Weaver
7d154949c9
gnu: linux-libre@4.4: Update to 4.4.32. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.32.
 2016-11-16 00:06:46 -05:00
Hartmut Goebel
d46491779e
gnu: python-awscli: fix inputs. 
* gnu/packages/python.scm (python-awscli): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:22 +01:00
Hartmut Goebel
8fa6890b6c
gnu: python-botocore: fix inputs. 
* gnu/packages/python.scm (python-botocore): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:21 +01:00
Hartmut Goebel
05e2e4cf00
gnu: python-pip: fix inputs. 
* gnu/packages/python.scm (python-pip): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:21 +01:00
Hartmut Goebel
e62600feb6
gnu: python2-ipython: fix inputs. 
* gnu/packages/python.scm (python2-ipython): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:20 +01:00
Hartmut Goebel
5b1416d983
gnu: python-betamax: fix inputs. 
* gnu/packages/python.scm (python-betamax): [inputs] change to
  [propagated-inputs].
 2016-11-15 22:36:19 +01:00
Hartmut Goebel
1b5241c515
gnu: python-scikit-learn: Remove useless property "python2-variant". 
The Python 2 packages does not change the definition, thus the
propery is useless.

* gnu/packages/python.scm (python-scikit-learn): [properties]:
  Remove  "python2-variant". (python2-scikit-learn): Remove
  now needless "strip-python2-variant".
 2016-11-15 22:36:18 +01:00
Hartmut Goebel
bac23672ee
gnu: python-tables: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-tables)[source]: Add snippet.
 2016-11-15 22:36:18 +01:00
Hartmut Goebel
b9c8ccce04
gnu: python-flake8-2.2.4: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-flake8-2.2.4)[source]: Add snippet.
 2016-11-15 22:36:17 +01:00
Hartmut Goebel
011271c769
gnu: python-flake8: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-flake8)[source]: Add snippet.
 2016-11-15 22:36:09 +01:00
Hartmut Goebel
bac6816879
gnu: python-pytest-django: Remove needless propagated input "python-py". 
This is already propagated by python-pytest.

* gnu/packages/python.scm (python-pytest-django) [propagated-inputs]:
  Remove python-py.
 2016-11-15 22:32:02 +01:00
Hartmut Goebel
de5bc89093
gnu: python2-pbcore: Fix inputs: 
* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
  [propagated-inputs]. [native-inputs]: Remove python-docutils, which
  comes with sphinx. [former propagated-inputs]: move all (which is only
  pyxb) to [inputs].
 2016-11-15 22:32:01 +01:00
Hartmut Goebel
54c85e12fd
gnu: python2-warpedlmm: Remove phase remove-bin-directory. 
This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)

* gnu/packages/bioinformatics.scm (python2-warpedlmm)
  [modify-phases] Remove, since remove-bin-directory was the only
  modification here.
 2016-11-15 22:32:00 +01:00
Hartmut Goebel
3221207417
gnu: khal: Fix build. 
The old one was plain wrong and only worked by luck since the old
python build system did manipulate PYTHONPATH.

* gnu/packages/calendar.scm(khal)[phase manpage]: Use
  add-installed-pythonpath.
 2016-11-15 22:31:59 +01:00
Hartmut Goebel
632735f215
gnu: python-testlib: Remove useless self-defined phase "unpack". 
Unzipping is now done by standard-phase "unpack" automatically.

* gnu/packages/python.scm (python-testlib, python2-testlib)[phases] No longer
  replace "unpack".
 2016-11-15 22:31:59 +01:00
Hartmut Goebel
251ed7f2fe
gnu: python-sphinxcontrib-newsfeed: Remove needless input. 
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed) [propagated-inputs]:
  Remove python-docutils, already porpagated by python-sphinx.
 2016-11-15 22:31:58 +01:00
Hartmut Goebel
38ceb106bd
gnu: python-nautilus: Correct inputs 
* gnu/packages/python.scm(python-nautilus, python2-nautilus):
  [propagated-inputs] remove python-graphql-core, python-graphql-relay,
  python-requests: not listed and already propagated by others. Remove
  pycparser: not listed, not used in source. Move python-nose2 to
  [native-inputs] (used for tests only).
 2016-11-15 22:31:57 +01:00
Hartmut Goebel
4e0969686c
gnu: python-freezegun: Correct input. 
* u/packages/python.scm(python-freezegun)[native-inputs] move
  python-dateutils-2 to [propagated-inputs].
 2016-11-15 22:31:56 +01:00
Hartmut Goebel
fd1d6de729
gnu: python-consul: Correct inputs. 
* gnu/packages/python.scm(python-consul)[native-inuts] move python-requests
  and python-six to [propagated-inputs].
 2016-11-15 22:31:55 +01:00
Hartmut Goebel
2c199b5527
gnu: python-prompt-toolkit: Correct inputs 
* gnu/packages/python.scm(python-prompt-toolkit)[native-inputs] move
  python-six to [propagated-inputs]. Remove now empty [native-inputs].
 2016-11-15 22:31:55 +01:00
Hartmut Goebel
d8ea5f2f27
gnu: python-responses: Correct inputs 
* gnu/packages/python.scm(python-responses)[native-inputs] move python-cookies
  to [propagated-inputs]
 2016-11-15 22:31:54 +01:00
Hartmut Goebel
a0a0985978
gnu: python-sphinxcontrib-programoutput: Remove needless input. 
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinxcontrib-programoutput)
  [propagated-inputs]: Remove python-docutils.
 2016-11-15 22:31:53 +01:00
Hartmut Goebel
47c7dc4a3f
gnu: python-sphinx-repoze-autointerface: Remove needless input. 
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinx-repoze-autointerface)
  [propagated-inputs]: Remove python-docutils.
 2016-11-15 22:31:52 +01:00
Hartmut Goebel
06f1d73ed4
gnu: python-celery: Remove needless inputs. 
These are indirect requirements and propagated by python-kombu.

* gnu/packages/python.scm(python-celery)[propagated-inputs] Remove python-amqp
  and python-anyjson.
 2016-11-15 22:31:51 +01:00
Hartmut Goebel
f7989b8bb0
gnu: Remove some outdated comments. 
These comments were about setuptools used at runtime for pkg_resources.

* gnu/packages/python.scm: Remove some outdated comments.
 2016-11-15 22:31:50 +01:00
Hartmut Goebel
7ba07edfb1
gnu: python-tox: Update FIXME comments. 
* gnu/packages/python.scm(python-tox)[arguments]: Update FIXME
  comment. [inputs]: Add FIXME comment.
 2016-11-15 22:31:49 +01:00
Hartmut Goebel
8322749a1c
gnu: python-urllib3: update comment. 
* gnu/packages/python.scm(python-urllib3)[propagated-inputs]: Update comment.
 2016-11-15 22:31:49 +01:00
Hartmut Goebel
b9fc496ff6
gnu: python-wsgi-intercept: Correct inputs. 
* gnu/packages/python.scm(python-wsgi-intercept): [native-inputs]: move
  python-six to [propagated-inputs].  [propagated-inputs] move
  python-httplib2, python-requests to [native-inputs].
 2016-11-15 22:31:48 +01:00
Hartmut Goebel
a5333f7c61
gnu: python-websocket-client: Correct inputs. 
* gnu/packages/python.scm (python-websocket-client)[native-inputs] change to
  [propagated-inputs], remove a wrong comment.
 2016-11-15 22:31:47 +01:00
Hartmut Goebel
fd8e23b7b3
gnu: python-zope-security: Correct inputs. 
* gnu/packages/python.scm(python-zope-security)[native-inputs] New element,
  move python-zope-component, python-zope-configuration, python-zope-location,
  python-zope-testrunner, python-zope-testing here.
 2016-11-15 22:31:46 +01:00
Hartmut Goebel
861f70c9da
gnu: python-configobj: Correct inputs. 
* gnu/packages/python.scm(python-configobj)[native-inputs] change to
  [propagated-inputs].
 2016-11-15 22:31:46 +01:00
Hartmut Goebel
d27f176a72
gnu: python-zope-location: Correct inputs. 
* gnu/packages/python.scm(python-zope-location)[native-inputs] change to
  [propagated-inputs].
 2016-11-15 22:31:45 +01:00
Hartmut Goebel
38d480a8a6
gnu: python-zope-interface: Correct inputs. 
* gnu/packages/python.scm(python-zope-interface)[propagated-inputs] change to
  [native-inputs].
 2016-11-15 22:31:44 +01:00
Hartmut Goebel
2887700e4d
gnu: python-pathpy: Build documentation. 
* gnu/packages/python.scm (python-pathpy, python2-pathpy)
  [output] Add output "doc".
  [native-inputs]: Add python-sphinx and python-rst.linker
  [build-doc], [install-doc]: New build phases.
 2016-11-15 22:31:43 +01:00
Hartmut Goebel
fe94cf0cdd
gnu: Add python-rst.linker, python2-rst.linker. 
* gnu/packages/python.scm (python-rst.linker, python2-rst.linker): New
  variables.
 2016-11-15 22:31:43 +01:00
Hartmut Goebel
213d1745c6
gnu: python-numpydoc: Correct inputs. 
* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
  [native-inputs]: Remove python-docutils. Move python-shpinx to
  [propagated-inputs].
 2016-11-15 22:31:42 +01:00
Hartmut Goebel
cf8124b017
gnu: python-redis: Remove unused input. 
* gnu/packages/python.scm (python-redis, python2-redis) Comment out
  [native-inputs] since these are used only for running tests, which
  is disabled since it requires a Redis server.
 2016-11-15 22:31:41 +01:00
Hartmut Goebel
1273359455
gnu: python2-scikit-image: Remove needless native-input and inheritance. 
Remove last additional [native-inputs] python-mock, thus there is no
need to inherit python-scikit-image package. Simply use
package-with-python2.

* gnu/packages/python.scm: (python-scikit-image): [properties]: Remove
  python2-variant. (python2-scikit-image) Use simply
  "package-with-python2" after removing last [native-inputs] python-mock.
 2016-11-15 22:31:40 +01:00
Hartmut Goebel
ddd1dc3d2d
gnu: python2-scikit-image: Remove needless propagated-input. 
* gnu/packages/python.scm: (python2-scikit-image)
  [propagated-inputs]: Remove python-pytz, it does not occur anywhere in
  the source.
 2016-11-15 22:31:39 +01:00
Hartmut Goebel
b83e23337b
gnu: python-scikit-image: Correct inputs. 
* gnu/packages/python.scm: (python-scikit-image, python2-scikit-image)
  [propagated-inputs]: Move python-numpy and python-six to [native-inputs].
  Add comment.
 2016-11-15 22:31:39 +01:00
Hartmut Goebel
9fbe7b2bca
gnu: python-blinker: No longer disable tests. 
The package does not provide tests, but there is no need to disable them.
Having them enabled allows running them if some newer version may provide
tests.

* gnu/package/python.scm (python-blinker, python2-blinker):
  [arguments]: Remove.
 2016-11-15 22:31:38 +01:00
Hartmut Goebel
7c88bcf4bb
gnu: python-feedgenerator: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-feedgenerator, python2-feedgenerator)
  [source]: Add snippet.
 2016-11-15 22:31:37 +01:00
Hartmut Goebel
f052ec9a50
gnu: python-joblib: Add comment. 
* gnu/packages/python.scm (python-joblib): Add comment.
 2016-11-15 22:31:36 +01:00
Hartmut Goebel
6aa5f1ca24
gnu: python-joblib: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-joblib, python2-joblib)[source]:
  Add snippet.
 2016-11-15 22:31:36 +01:00
Hartmut Goebel
bb06aa3446
gnu: python-oauthlib, python-oauthlib2: Correct inputs. 
* gnu/packages/python.scm (python-oauthlib) [propagated-inputs] Move all to
  [native-inputs]. [native-inputs]: Remove python-mock, python-coverage.
  (python2-oauthlib)[native-inputs]: Add python2-mock.
 2016-11-15 22:31:35 +01:00
Hartmut Goebel
130fe99410
gnu: python-pyjwt: Add missing inputs and enable test-suite. 
* gnu/packages/python.scm (python-pyjwt) [native-inputs]: Add
  python-pytest and python-pytest-cov. [arguments]. Remove.
 2016-11-15 22:31:34 +01:00
Hartmut Goebel
f78e1c27ef
gnu: python-cov-core: Fix imports. 
* gnu/packages/python.scm (python-cov-core) [inputs]: change
  to [propagated-inputs].
 2016-11-15 22:31:33 +01:00
Hartmut Goebel
25b2c47d75
gnu: python-statsmodels: Fix build 
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
 2016-11-15 22:31:33 +01:00
Hartmut Goebel
d5e41cf28c
gnu: pytest-mock: remove needless propagated input "python-py". 
This is not listed as an requirement and is already propagated by
python-pytest.

* gnu/packages/python.scm (python-pytest-mock, python2-pytest-mock):
  [propagated-inputs]: Remove python-py.
 2016-11-15 22:31:32 +01:00
Hartmut Goebel
8e73d3baab
gnu: python-testscenarios: remove needless input "mimetools". 
This does not occur in the source.

* gnu/packages/python.scm (python-testscenarios, python2-testscenarios)
  [propagated-inputs]: Remove python-mimeparse.
 2016-11-15 22:31:31 +01:00
Hartmut Goebel
e0ed457944
gnu: python-setuptools: remove pre-built binaries from source. 
These are used to build self-extracting installers for Windows.

* gnu/packages/python.scm (python-setuptools, python2-setuptools) [source]:
  Add snippet to delete *.exe files.
 2016-11-15 22:31:30 +01:00
Hartmut Goebel
c4516ad206
gnu: python-pytest-xdist: Remove needless input python-apipkg. 
* gnu/packages/python.scm (python-pytest-xdist): Remove input
  python-apipkg.
 2016-11-15 22:31:29 +01:00
Hartmut Goebel
b52ad3714a
gnu: python-subunit, python-testrepository: Fix inputs 
* gnu/packages/python.scm (python-subunit, python2-subunit):
  [propagated-inputs]:: Add python-extras, remove python-testtools, move
  python-testscenarios to [native-inputs].  (python-testrepository,
  python2-testrepository): [native-inputs] move python-fixtures and
  python-subunit to [propagated-inputs]
 2016-11-15 22:31:29 +01:00
Hartmut Goebel
521b77729e
gnu: python-scripttest: Correct inputs. 
python-pytest is only required for testing, not at run-time.

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [propagated-inputs] Move python-pytest to [native-inputs].
 2016-11-15 22:31:28 +01:00
Hartmut Goebel
abcc7a0eb9
gnu: python-pandas: Fix build. 
* gnu/packages/python.scm (python-pandas): Add python-cython to
  native-inputs.
 2016-11-15 22:31:27 +01:00
Hartmut Goebel
e116d100fd
gnu: openstack: Correct inputs. 
* gnu/packages/openstack.scm (python-os-testr) Propagate input
  python-subunit, change all other inputs to native-inputs.
  (python-mox3): Remove needless input python-six.
  (python-stevedore, python-requests-mock): Move python-pbr to
  native-inputs.
 2016-11-15 22:31:27 +01:00
Hartmut Goebel
48160559a1
gnu: thefuck: Fix build. 
Requires setuptools >= 17.1 due to some features used, while our
python currently only includes 12.0.

* gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
 2016-11-15 22:31:26 +01:00
Hartmut Goebel
a08a835034
gnu: vdirsyncer: Fix build by setting correct PYTHONPATH. 
For thus, use add-installed-pythonpath.

* gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using
  add-installed-pythonpath.
 2016-11-15 22:31:25 +01:00
Hartmut Goebel
eee5cd0440
gnu: python-ipython: Fix build. 
* gnu/packages/python.scm (python-ipython, python2-ipython) [check,
  install-doc] set PYTHONPATH prior to running tests.
 2016-11-15 22:31:24 +01:00
Hartmut Goebel
d548e6aa06
gnu: python-scipy: Fix build. 
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath.  Add
  dummy newlines character to string to make emacs happy.
 2016-11-15 22:31:23 +01:00
Hartmut Goebel
ca33a3ad97
gnu: python-matplotlib: Fix build. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
  inputs. [install-doc] set PYTHONPATH prior to building docs.
 2016-11-15 22:31:23 +01:00
Hartmut Goebel
2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build. 
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
  modify-phases, add dummy newlines character to string to make emacs happy,
  set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
  PYTHONPATH prior to building docs.
 2016-11-15 22:31:22 +01:00
Hartmut Goebel
9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges. 
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
 2016-11-15 22:31:21 +01:00
Hartmut Goebel
b72ac1b54b
gnu: python2-pysnptools: Correct inputs. 
dateutil, pytz, and six do not occur in the code.

Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
 2016-11-15 22:31:21 +01:00
Hartmut Goebel
e408ffc302
gnu: python-zope-testing: Remove needless input. 
* gnu/packages.python.scm (python-zope-testing): Remove
  python-zope-interface from native-imports.
 2016-11-15 22:31:20 +01:00
Hartmut Goebel
47f77210fc
gnu: python-zope-schema: Add missing inputs. 
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
  python-nose to native-inputs.
 2016-11-15 22:31:19 +01:00
Hartmut Goebel
05c2fd3685
gnu: python-pytest-flakes: Fix build. 
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
 2016-11-15 22:31:18 +01:00
Hartmut Goebel
6151120a71
gnu: python-pillow: Fix build. 
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
  installed site-package to PYTHONPATH.
 2016-11-15 22:31:17 +01:00
Hartmut Goebel
5e1c9d242a
gnu: python-singledispatch: correct inputs. 
python-six is only required for conversion, not at run-time

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [inputs] Move python-six to [native-inputs].
 2016-11-15 22:31:17 +01:00
Hartmut Goebel
d2a8db92fe
gnu: python-pbr: Rework bootstrapping. 
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping.  Now we use the same version just without tests and without
test dependencies.

* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
  replace by … (python-pbr-minimal, python2-pbr-minimal).
  (python-pbr) inherit from python-pbr-minimal, adding the requirements for
  testing and building the documentation.
  (python-fixtures) [native-inputs] Use python-pbr-minimal here.
  (python-testrepository): [native-inputs] Add it here, it was a missing
  dependency.
 2016-11-15 22:31:16 +01:00
Hartmut Goebel
b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs. 
python-fixtures is required only for building.

* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
  python-fixtures to [native-inputs].
 2016-11-15 22:31:15 +01:00
Hartmut Goebel
424f0a4175
gnu: python-fixture: Enable tests. 
* gnu/packages/python.scm (python-fixtures) [arguments] remove
  keyword `#:tests?`.
 2016-11-15 22:31:14 +01:00
Hartmut Goebel
ae92caddc5
gnu: python-fixture: Correct inputs. 
python-pbr is required only for building.

* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
  python-pbr-0.11 to [native-inputs].
 2016-11-15 22:31:13 +01:00
Hartmut Goebel
6986669012
gnu: python-hdf5: Correct inputs. 
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.

* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
  [propagated-inputs].
 2016-11-15 22:31:12 +01:00
Hartmut Goebel
9820a02858
gnu: python-h5py: Remove needless "python2-variant" property. 
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
  property. (python2-h5py): Don't strip property "strip-python2-variant".
 2016-11-15 22:31:12 +01:00
Hartmut Goebel
d9a6e221e2
gnu: python-ccm: Update synopsis and description. 
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
 2016-11-15 22:31:11 +01:00
Hartmut Goebel
e165f137d8
gnu: python-ccm: Add missing input python-psutil. 
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
  python-psutil.
 2016-11-15 22:31:10 +01:00
Hartmut Goebel
ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs. 
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.

* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
 2016-11-15 22:31:09 +01:00
Hartmut Goebel
ce40b38395
gnu: python-pytest-cov: Use upstream options for testing. 
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
  by one passing the options found in upstream's tox.ini-file
  to "python setup.py check".
 2016-11-15 22:31:08 +01:00
Hartmut Goebel
b3e8b4bd0f
gnu: scons: Do not use setuptools for building. 
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
 2016-11-15 22:31:07 +01:00
Hartmut Goebel
f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input. 
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
  [native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
 2016-11-15 22:31:07 +01:00
Hartmut Goebel
328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs. 
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.

* gnu/packages/python.scm
  (python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
  python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
  change to [native-inputs].
  (python-flake8, tox) Likewise, add a comment.
  (python-scikit-learn, python-numpy)[native-inputs] New element, move
  python-nose here.
  (python2-kombu)[inputs] change to [native-inputs], use python-kombu's
  package-native-inputs.
 2016-11-15 22:31:06 +01:00
Hartmut Goebel
482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs 
* gnu/packages/openstack.scm
  (python-os-client-config)[inputs] change to
  [native-inputs]. [propagated-inputs]: New element, move python-appdirs,
  python-pyyaml here.
  (python-git-review)[propagated-inputs]: New element, move python-requests
  here.
* gnu/packages/python.scm
  (python-rpy2)[propagated-inputs]: New element, move python-six here.
  (python-xcffib)[inputs] move python-six to [propagated-inputs].
  (python-flake8)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-pytest)[propagated-inputs]: New element, move python-py here.
  (python-tox)[propagated-inputs]: New element, move all inputs except of
  python-pytest here.
  (python-botocore)[propagated-inputs]: New element, move python-dateutil,
  python-docutils, python-jmespath here.
  (awscli)[propagated-inputs]: New element, move python-colorama,
  python-botocore, python-s3transfer, python-docutils, python-rsa here.
  (python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
  python-lxml here.
 2016-11-15 22:31:05 +01:00
Hartmut Goebel
dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs. 
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].

* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
  changed to [propagated-inputs].
 2016-11-15 22:31:04 +01:00
Hartmut Goebel
e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs. 
This patch contains the changes where all [inputs] are changed to
[native-inputs].

* gnu/packages/python.scm (python-pytest, python-fixtures,
  python-testrepository, python-virtualenv): All [inputs] are changed to
  [native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
  python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
  python-oslo.i18n, python-oslo.log, python-oslo.serialization,
  python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
 2016-11-15 22:31:03 +01:00
Hartmut Goebel
f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs. 
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]

* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
  python-babel, python-keyring python-pandas, python-tzlocal,
  python-parse-type, python-nose2, python-pytest, python-pytest-mock,
  python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
  python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
  python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
  pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
  python-tornado, python2-tornado, python-debian, python-execnet,
  python-pytest-cache, pytest-localserver, python-clint, python-rply,
  python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
  python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
  python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
  python-schematics, python-url, python2-url, python-freezegun,
  python-glances, python-graphql-core, python-graphql-relay, python-graphene,
  python-nautilus, python-s3transfer): All [inputs] become
  [propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.

SQACH all become propagated
 2016-11-15 22:31:03 +01:00
Hartmut Goebel
b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs). 
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
 2016-11-15 22:31:02 +01:00
Hartmut Goebel
d8013ee221
gnu: Remove needless inputs python-pip and python2-pip. 
This is installed together with Python 3 anyway and for our build
of Python 2.

* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
  "python2-pip". (python-reportlab)[properties]: remove "python2-variant".
 2016-11-15 22:31:01 +01:00
Hartmut Goebel
f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b) 
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).

* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
  from a Python 3 package if adding python-setuptools respective
  python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
  been the sole reason for inheriting. Remove now needless [properties]
  "python2-variant" where applicable.
  (python2-lockfile, python2-keyring, python2-dateutil-2,
  python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
  python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
  python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
  python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
  python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
  python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
  python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
  python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
  python2-flask, python2-cookies, python2-responses, python2-future,
  python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
  python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
  python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
  python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
  python2-pytest-pep8, python2-pytest-flakes, python2-glances,
  python2-betamax, python2-file, python2-flask-babel, python2-furl,
  python2-imagesize python2-orderedmultidict, python2-pycodestyle,
  python2-vcversioner, python2-graphql-core, python2-graphql-relay,
  python2-validictory): Remove neesless input "python2-setuptools", don't
  inherit, don't call strip-python2-variant.
  (python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
  python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
  python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
  python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
  python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
  python-execnet, python-pytest-cache, python-wtforms, python-mako,
  python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
  python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
  python-psycopg2, python-vobject, python-flask, python-cookies,
  python-responses, python-future, python-ply, python-wcwidth,
  python-prompt-toolkit, python-jedi, python-requests-oauthlib,
  python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
  python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
  python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
  python-file, python-flask-babel, python-furl, python-imagesize,
  python-orderedmultidict, python-pycodestyle, python-vcversioner,
  python-graphql-core, python-graphql-relay, python-validictory): Remove
  "python2-variant" property.
 2016-11-15 22:29:00 +01:00
Hartmut Goebel
5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a) 
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
 2016-11-15 22:28:59 +01:00
Hartmut Goebel
00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3) 
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
 2016-11-15 22:28:38 +01:00
Hartmut Goebel
f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2) 
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.

* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
  [propagated-inputs] where python-setuptools or python2-setuptools are the
  sole entries. Remove python-setuptools and python2-setuptools listed on a
  line by its own from [inputs], [native-inputs] and [propagated-inputs].

* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
  python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
  crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
  pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
  python-os-testr, python2-os-testr,
  python-stevedore, python2-stevedore,
  python-tempest-lib, python2-tempest-lib,
  python-oslo.log, python2-oslo.log,
  python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
  python-babel, python2-babel,
  python-parse-type,
  python-pytest, python2-pytest,
  python-scripttest, python2-scripttest,
  python-testtools, python2-testtools,
  python-testscenarios, python2-testscenarios,
  python-subunit, python2-subunit,
  python-pbr-0.11,
  python-pbr, python2-pbr,
  python-testrepository, python2-testrepository,
  behave,
  python-wheel, python2-wheel,
  python-requests, python2-requests,
  python-jsonschema, python2-jsonschema,
  python-pyjwt, python2-pyjwt,
  python-virtualenv, python2-virtualenv,
  python-jinja2, python2-jinja2,
  python-joblib, python2-joblib,
  python-sphinx, python2-sphinx,
  python-feedgenerator, python2-feedgenerator,
  python-scikit-image, python2-scikit-image,
  python-redis, python2-redis,
  python2-fastlmm,
  python-numpydoc, python2-numpydoc,
  python-matplotlib, python2-matplotlib,
  python2-pysnptools,
  python-rpy2, python2-rpy2,
  python-pillow, python2-pillow,
  python-pycparser, python2-pycparser,
  python-cffi, python2-cffi,
  python-cairocffi, python2-cairocffi,
  python-drmaa, python2-drmaa,
  python-pathpy, python2-pathpy,
  python-simplegeneric, python2-simplegeneric,
  python-ipython, python2-ipython,
  python-apsw, python2-apsw,
  python-lxml, python2-lxml,
  python-networkx, python2-networkx,
  python-pyzmq, python2-pyzmq,
  python-mccabe, python2-mccabe,
  python-mccabe-0.2.1,
  python-flake8, python2-flake8,
  python-flake8-2.2.4,
  python-mistune, python2-mistune,
  python-ptyprocess, python2-ptyprocess,
  python-llfuse, python2-llfuse,
  python-webob, python2-webob,
  python-xlrd, python2-xlrd,
  python-tables, python2-tables,
  python-pip, python2-pip,
  python-libarchive-c, python2-libarchive-c,
  python-docopt, python2-docopt,
  python-pyrfc3339, python2-pyrfc3339,
  python-configobj, python2-configobj,
  python-clint, python2-clint,
  python-rply, python2-rply,
  python2-rpython,
  python-widgetsnbextension, python2-widgetsnbextension
  jupyter,
  python-jupyter-console, python2-jupyter-console,
  python-hy, python2-hy,
  python-urllib3, python2-urllib3,
  python-rsa, python2-rsa,
  python-tox, python2-tox,
  python2-hypothesis,
  python-paste, python2-paste,
  python-pastescript, python2-pastescript,
  python2-unicodecsv,
  python-pkgconfig, python2-pkgconfig,
  python2-rope,
  python-sqlparse, python2-sqlparse,
  python-gevent, python2-gevent,
  python-tabulate, python2-tabulate,
  python-arrow, python2-arrow,
  python-cleo, python2-cleo,
  python-fake-factory, python2-fake-factory,
  ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
 2016-11-15 22:27:31 +01:00
Hartmut Goebel
5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b) 
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.

* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
  [native-inputs] and [propagated-inputs] where python-setuptools or
  python2-setuptools are the sole entries. Remove python-setuptools and
  python2-setuptools listed on a line by its own from [inputs],
  [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
  multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
  python-django-simple-math-captcha, python2-django-simple-math-captcha):
  Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
  python-debtcollector, python2-debtcollector,
  python-mox3, python2-mox3,
  python-os-client-config, python2-os-client-config,
  python-oslo.config, python2-oslo.config,
  python-oslo.context, python2-oslo.context,
  python-oslo.i18n, python2-oslo.i18n,
  python-oslo.serialization, python2-oslo.serialization,
  python-oslosphinx, python2-oslosphinx,
  python-oslotest, python2-oslotest,
  python-oslo.utils, python2-oslo.utils,
  python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
 2016-11-15 21:58:44 +01:00
Hartmut Goebel
f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a) 
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.

* gnu/packages/python.scm (python-psutil, python2-psutil,
  python-py-bcrypt, python2-py-bcrypt,
  python-paramiko, python2-paramiko,
  python-httplib2, python2-httplib2,
  python-ecdsa, python2-ecdsa,
  python-ccm, python2-ccm,
  python2-backport-ssl-match-hostname,
  python-pycrypto, python2-pycrypto,
  python-six, python2-six,
  python-dateutil, python2-dateutil,
  python2-mechanize,
  python-extras, python2-extras,
  python-mimeparse, python2-mimeparse,
  python-nose, python2-nose,
  python-nose2, python2-nose2,
  python-unittest2, python2-unittest2,
  python-py, python2-py,
  python-testresources, python2-testresources,
  python-fixtures-0.3.16,
  python-fixtures, python2-fixtures,
  python-coverage, python2-coverage,
  python-discover, python2-discover,
  python-exif-read, python2-exif-read,
  python-pyld, python2-pyld,
  python-certifi, python2-certifi,
  python-click, python2-click,
  python-vcversioner, python2-vcversioner,
  python-unidecode, python2-unidecode,
  python-pyyaml, python2-pyyaml,
  python-markupsafe, python2-markupsafe,
  python-pystache, python2-pystache,
  python-docutils, python2-docutils,
  python-pygments, python2-pygments,
  python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
  python-blinker, python2-blinker,
  python-rq, python2-rq,
  python-numpy, python2-numpy,
  python-distutils-extra, python2-distutils-extra,
  python2-elib.intl,
  python-pillow, python2-pillow,
  python-xcffib, python2-xcffib,
  python-decorator, python2-decorator,
  python-gridmap, python2-gridmap,
  python-pickleshare, python2-pickleshare,
  python-isodate, python2-isodate,
  python-html5lib, python2-html5lib,
  python2-cssutils,
  python-cssselect, python2-cssselect,
  python-netifaces, python2-netifaces,
  python-sympy, python2-sympy,
  python-testlib, python2-testlib,
  python2-xlib,
  python-singledispatch, python2-singledispatch,
  python-backports-abc, python2-backports-abc,
  python-pep8, python2-pep8,
  python-pyflakes, python2-pyflakes,
  python-fonttools, python2-fonttools,
  python-ly,
  python-appdirs, python2-appdirs,
  python-netaddr, python2-netaddr,
  python-wrapt, python2-wrapt,
  python-iso8601, python2-iso8601,
  python-monotonic, python2-monotonic,
  python-prettytable, python2-prettytable,
  python-pyasn1-modules, python2-pyasn1-modules,
  python-idna, python2-idna,
  python-pretend, python2-pretend,
  python-cryptography-vectors, python2-cryptography-vectors,
  python-cryptography, python2-cryptography,
  python-pyopenssl, python2-pyopenssl,
  python-debian, python2-debian,
  python-chardet, python2-chardet,
  python-zope-event, python2-zope-event,
  python-zope-i18nmessageid, python2-zope-i18nmessageid,
  python-websocket-client, python2-websocket-client,
  python-args, python2-args,
  python-astor, python2-astor,
  python2-functools32,
  python2-futures,
  python2-promise,
  python-colorama, python2-colorama,
  python-pluggy, python2-pluggy,
  python-jmespath, python2-jmespath,
  python-botocore, python2-botocore,
  awscli,
  python-pytest-subtesthack, python2-pytest-subtesthack,
  python-pastedeploy, python2-pastedeploy,
  python-magic, python2-magic,
  python2-s3cmd,
  python2-bz2file,
  python-cysignals, python2-cysignals,
  python-py3status,
  python-tblib, python2-tblib,
  python-greenlet, python2-greenlet,
  python-twisted, python2-twisted,
  python-kazoo, python2-kazoo,
  python-pykafka, python2-pykafka,
  python2-jsonrpclib,
  python-chai, python2-chai,
  python-inflection, python2-inflection,
  python-pylev, python2-pylev,
  python-lazy-object-proxy, python2-lazy-object-proxy,
  python-dnspython, python2-dnspython,
  python-email-validator, python2-email-validator,
  python-ukpostcodeparser, python2-ukpostcodeparser,
  python-pyaml, python2-pyaml,
  python-flexmock, python2-flexmock,
  python-orator, python2-orator,
  python-bleach, python2-bleach,
  python-ipywidgets, python2-ipywidgets,
  python-nbconvert, python2-nbconvert,
  python-nbformat, python2-nbformat,
  python-axolotl-curve25519, python-axolotl2-curve25519,
  python-axolotl, python2-axolotl,
  python-nautilus, python-s3transfer): Remove python-setuptools and
  python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
  Remove [inputs], [native-inputs] and [propagated-inputs] where
  python-setuptools or python2-setuptools were the sole entry.
 2016-11-15 21:54:58 +01:00
ng0
e1b0b8f5b7
gnu: Fix name for ng0. 
* gnu/packages/gnupg.scm: Change name in copyright header.
 2016-11-15 14:36:58 -05:00
Tobias Geerinckx-Rice
bb6e641588
gnu: Add httptunnel. 
* gnu/packages/web.scm (httptunnel): New variable.
 2016-11-15 20:27:14 +01:00
Ricardo Wurmus
84590149e6
gnu: hisat: Fix typo. 
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
 2016-11-15 20:21:08 +01:00
Ricardo Wurmus
49c2665f7b
gnu: Add pcb-rnd. 
* gnu/packages/engineering.scm (pcb-rnd): New variable.
 2016-11-15 20:21:03 +01:00
Hartmut Goebel
15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes. 
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-11-15 17:37:48 +01:00
Hartmut Goebel
aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2. 
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
  configure-flags.
* doc/guix.texi (Python Modules): Document it.
 2016-11-15 17:37:40 +01:00
Efraim Flashner
b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
 2016-11-15 15:25:15 +02:00
Efraim Flashner
f5a077b10f
gnu: octave: Update to 4.2.0. 
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
 2016-11-15 15:21:15 +02:00
Efraim Flashner
fccab9931c
gnu: parallel: Update to 20161022. 
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
 2016-11-15 11:45:53 +02:00
Efraim Flashner
6312043ca5
gnu: libcdio: Update to 0.94. 
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
 2016-11-15 11:13:24 +02:00
Efraim Flashner
3ded2761ab
gnu: gvpe: Update to 3.0. 
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
 2016-11-15 11:06:15 +02:00
Efraim Flashner
336f830961
gnu: cryptsetup: Update to 1.7.3. 
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
 2016-11-15 09:45:37 +02:00
Efraim Flashner
538fe01934
gnu: python-vcversioner: Update to 2.16.0.0. 
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-11-15 09:45:28 +02:00
Tobias Geerinckx-Rice
1f781865fb
gnu: fish: Update to 2.4.0. 
* gnu/packages/shells.scm (fish): Update to 2.4.0.
 2016-11-15 01:17:01 +01:00
Tomáš Čech
028bf3c0b2
gnu: connman: Use localstatedir outside of store. 
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
 2016-11-15 00:13:29 +01:00
Efraim Flashner
8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'. 
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
 2016-11-14 22:49:50 +02:00
Efraim Flashner
571ffdebc3
gnu: accountsservice: Update to 0.6.43. 
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
 2016-11-14 21:02:10 +02:00
Ludovic Courtès
a4cb821791
gnu: guix-devel: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855.
 2016-11-14 15:39:32 +01:00
Ludovic Courtès
198eac2bca
gnu: guix: Really skip all the container tests. 
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
 2016-11-14 15:39:32 +01:00
Tobias Geerinckx-Rice
88eaed6174
gnu: libpsl: Update to 0.15.0. 
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
 2016-11-14 14:12:50 +01:00
Efraim Flashner
7ca37da855
gnu: libinput: Enable GUI event tool. 
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
 2016-11-14 13:06:02 +02:00
Efraim Flashner
73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically. 
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
 2016-11-14 12:15:40 +02:00
Efraim Flashner
8c5cdf5f20
gnu: libinput: Update to 1.5.1. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
 2016-11-14 12:12:26 +02:00
Efraim Flashner
b231b057cd
gnu: wayland-protocols: Update to 1.7. 
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
 2016-11-14 11:55:01 +02:00
Andy Patterson
e66f0dd232
gnu: mpv: Use lua@5.2. 
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
 2016-11-14 09:03:55 +00:00
Leo Famulari
d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524. 
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
 2016-11-13 17:01:01 -05:00
Leo Famulari
27d7c4e93a
gnu: signify: Update to 20. 
* gnu/packages/crypto.scm (signify): Update to 20.
 2016-11-13 17:01:01 -05:00
Ludovic Courtès
142530178d
gnu: mailutils: Update to 3.0. 
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-11-13 21:12:32 +01:00
Efraim Flashner
d81850d438
gnu: guile-ncurses: Update to 2.1. 
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
 2016-11-13 22:02:05 +02:00
Tobias Geerinckx-Rice
927d850512
gnu: btrfs-progs: Update to 4.8.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
 2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice
917239ff99
gnu: tidy: Use ‘modify-phases’. 
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
 2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice
3b0ac79500
gnu: protobuf: Replace dead Google Code home-page. 
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
 2016-11-13 13:33:59 +01:00
Tobias Geerinckx-Rice
3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4. 
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
 2016-11-13 13:33:59 +01:00
Andy Patterson
c25a51d5c6
gnu: clisp: Use readline@6.2. 
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-13 13:00:44 +01:00
Ludovic Courtès
2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Efraim Flashner
15abcabe4e
gnu: Add newsbeuter. 
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-11-12 20:50:48 +02:00
Efraim Flashner
c76dab7b36
gnu: Add stfl. 
* gnu/packages/ncurses.scm (stfl): New variable.
 2016-11-12 20:50:47 +02:00
Alex Sassmannshausen
8883b30165
gnu: Add perl-modern-perl. 
* gnu/packages/perl.scm (perl-modern-perl): New variable.
 2016-11-12 18:26:28 +01:00
Leo Famulari
5c66314bd9
gnu: libtiff: Fix CVE-2016-9273. 
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
 2016-11-12 11:05:19 -05:00
Danny Milosavljevic
0a7f17f0e0
gnu: Add python-flask-restplus. 
* gnu/packages/python.scm (python-flask-restplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 16:17:40 +01:00
Danny Milosavljevic
1e6112d89f
gnu: Add python-rednose. 
* gnu/packages/python.scm (python-rednose): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 16:15:08 +01:00
Danny Milosavljevic
e2fca4906e
gnu: Add python-termstyle. 
* gnu/packages/python.scm (python-termstyle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 16:10:23 +01:00
Ludovic Courtès
998f9ac56d
gnu: guix: Update development snapshot. 
This is a followup to 166ba5b102.

* gnu/packages/package-management.scm (guix-devel): Update to commit
166ba5b102.
 2016-11-12 14:49:04 +01:00
Clément Lassieur
4a38422157
gnu: prosody: fix SSL/TLS. 
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 13:04:45 +01:00
Ben Woodcroft
8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10. 
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
 2016-11-11 22:56:13 +10:00
Ben Woodcroft
e87dfdee86
gnu: ruby-arel: Update to 7.1.4. 
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
 2016-11-11 22:48:22 +10:00
Ben Woodcroft
16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1. 
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
 2016-11-11 22:45:38 +10:00
Ben Woodcroft
81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2. 
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
 2016-11-11 22:44:03 +10:00
Ben Woodcroft
c59491183a
gnu: ruby-rspec-core: Update to 3.5.4. 
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
 2016-11-11 22:40:39 +10:00
Ben Woodcroft
bb4bcb02c2
gnu: bundler: Update to 1.13.6. 
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
 2016-11-11 22:38:13 +10:00
Ben Woodcroft
e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a. 
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions.  Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-11 22:15:37 +10:00
Ricardo Wurmus
7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
 2016-11-11 09:08:08 +01:00
Ricardo Wurmus
0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
 2016-11-11 09:08:08 +01:00
Ricardo Wurmus
f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
 2016-11-11 09:08:08 +01:00
Ricardo Wurmus
83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
 2016-11-11 09:08:07 +01:00
Leo Famulari
071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
 2016-11-11 01:31:19 -05:00
Leo Famulari
86fc6fe777
gnu: linux-libre: Update to 4.8.7. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
 2016-11-11 01:31:15 -05:00
Ludovic Courtès
472fc855bc
gnu: Add guile-aspell. 
* gnu/packages/guile.scm (guile-aspell): New variable.
 2016-11-11 00:23:16 +01:00
Ludovic Courtès
2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings. 
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
 2016-11-11 00:23:16 +01:00
Leo Famulari
aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}]. 
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
 2016-11-10 18:17:50 -05:00
Ricardo Wurmus
b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode". 
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
 2016-11-10 18:49:49 +01:00
Ricardo Wurmus
3f62fa2b81
gnu: inkscape: Use modify-phases syntax. 
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
 2016-11-10 18:49:48 +01:00
Marius Bakke
65d2f396f7
gnu: vim: Update to 8.0.0073. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
 2016-11-10 17:30:08 +00:00
Ludovic Courtès
9e4e431e04
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c.
 2016-11-10 18:01:44 +01:00
Paul Garlick
1c79e0861a
gnu: gmsh: Update to 2.14.1 
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-10 18:57:57 +02:00
Marius Bakke
1b35fea19f
gnu: milkytracker: Update upstream location. 
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.

Reported-by: ng0 <ng0@we.make.ritual.n0.is>
 2016-11-10 16:33:57 +00:00
Leo Famulari
8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
 2016-11-10 11:33:20 -05:00
Tobias Geerinckx-Rice
f34284abcb
gnu: claws-mail: Update to 3.14.1. 
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
 2016-11-10 14:30:09 +01:00
Hartmut Goebel
99abcdbd9b
gnu: Add pdfposter. 
* gnu/packages/pdf.scm(pdfposter): New variable.
 2016-11-10 14:26:04 +01:00
Hartmut Goebel
c68e8591d8
gnu: Add python2-pypdf. 
* gnu/packages/pdf.scm (python2-pypdf): New variable.
 2016-11-10 14:26:04 +01:00
Hartmut Goebel
ad5a7d49c3
gnu: Add python-pypdf2. 
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
 2016-11-10 14:26:04 +01:00
Ludovic Courtès
8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings. 
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
 2016-11-09 21:24:44 +01:00
Thomas Danckaert
8bb115e0c6
gnu: Add kdevelop-pg-qt. 
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-09 21:24:44 +01:00
Thomas Danckaert
5a16e1c04e
gnu: Add libkomparediff2. 
* gnu/packages/kde.scm (libkomparediff2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-09 21:24:44 +01:00
Ludovic Courtès
28791c1c8d
gnu: hidapi: Fix 'license'. 
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
 2016-11-09 21:24:44 +01:00
Efraim Flashner
65dccb3a86
gnu: Add vifm. 
* gnu/packages/vim.scm (vifm): New variable.
 2016-11-09 20:56:36 +02:00
Leo Famulari
0b34b58688
gnu: libxslt: Fix CVE-2016-4738. 
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
 2016-11-09 10:19:49 -05:00
Efraim Flashner
d887f420d2
gnu: postgresql: Update to 9.5.5. 
* gnu/packages/databases.scm (postgresql): Update to 9.5.5.
[home-page]: Use https.
 2016-11-09 11:39:30 +02:00
Efraim Flashner
bc332a638b
gnu: mariadb: Update to 10.1.19. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
 2016-11-09 11:04:36 +02:00
Ludovic Courtès
de7da4e5d1
gnu: gnome-calculator: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.22.2.
 2016-11-09 09:25:18 +01:00
Ludovic Courtès
7894ea6122
gnu: gcc-arm-none-eabi-4.9: Remove non-applicable patch. 
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)[patches]: Remove
"gcc-arm-bug-71399.patch" from XGCC's patches.
 2016-11-08 23:57:29 +01:00
Efraim Flashner
e3ec6c806a
gnu: mate-themes: Update to 3.20.9. 
* gnu/packages/mate.scm (mate-themes): Update to 3.20.9.
[source]: Update package location.
[inputs]: Remove gtk+-2, add gtk+-3.
[description]: Add note about dual gtk+-2/gtk+-3 support.
 2016-11-08 22:53:43 +02:00
Efraim Flashner
27caff1b5d
gnu: mate-menus: Update to 1.16.0. 
* gnu/packages/mate.scm (mate-menus): Update to 1.16.0.
[propagated-inputs]: Move glib ...
[inputs]: ... to here.
 2016-11-08 22:35:27 +02:00
Efraim Flashner
9927943c30
gnu: mate-desktop: Update to 1.16.1. 
* gnu/packages/mate.scm (mate-desktop): Update to 1.16.1.
[arguments]: Build with gtk+-3, enable mpaste.
[propagated-inputs]: Remove gtk+-2, move libxrandr,
startup-notification ...
[inputs]: ... to here.  Add gtk+-3, python-2.
 2016-11-08 22:18:07 +02:00
Efraim Flashner
b6c5ad8564
gnu: mate-icon-theme: Update to 1.16.0. 
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.16.0.
 2016-11-08 22:16:54 +02:00
Efraim Flashner
065999807d
gnu: libmateweather: Update to 1.16.1. 
* gnu/packages/mate.scm (libmateweather): Update to 1.16.1.

[arguments]: Build with gtk+-3.
[propagated-inputs]: Remove gtk+-2, move gdk-pixbuf ...
[inputs]: ... to here. Add gtk+-3.
 2016-11-08 22:16:18 +02:00
Ricardo Wurmus
8ae6040451
gnu: Add faust-2. 
* gnu/packages/audio.scm (faust-2): New variable.
 2016-11-08 21:00:02 +01:00
Ricardo Wurmus
83c49858b5
gnu: Add LLVM variant with RTTI support. 
* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
 2016-11-08 20:59:58 +01:00
Marius Bakke
f0ad50af8c
gnu: python-tempest-lib: Update to 1.0.0. 
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0.
[home-page]: Use HTTPS.
 2016-11-08 18:22:48 +00:00
Marius Bakke
43b53bbbf5
gnu: python-os-testr: Update to 0.8.0. 
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update
to 0.8.0.
[home-page]: Use HTTPS.
 2016-11-08 18:22:18 +00:00
Marius Bakke
eaba9d6670
gnu: python-jsonschema: Correct inputs. 
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove
python-setuptools. Move python-vcversioner to ...
[native-inputs]: ... here.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Move
python2-functools32 to ...
[propagated-inputs]: ... here.
[native-inputs]: Add python2-setuptools.
 2016-11-08 18:22:07 +00:00
Leo Famulari
c163a28473
gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}]. 
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
 2016-11-08 12:48:26 -05:00
Marius Bakke
912dcbad86
gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3. 
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.5.3.
[native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
 2016-11-08 16:14:15 +00:00
Leo Famulari
fca4ff3559
gnu: Add python-pytest-2.9.2. 
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
 2016-11-08 16:14:04 +00:00