Ricardo Wurmus
28ad55a59d
gnu: pardre: Update to 2.2.5.
...
* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5.
[arguments]: Remove trailing #T and update comment about tests.
2021-12-02 15:40:46 +01:00
Ricardo Wurmus
fc20fad6f7
gnu: pardre: Use C++ bindings for MPI.
...
* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with
openmpi-c++.
2021-12-02 15:40:46 +01:00
Ricardo Wurmus
2d6be35ea2
gnu: Add openmpi-c++.
...
* gnu/packages/mpi.scm (openmpi-c++): New variable.
2021-12-02 15:40:45 +01:00
Liliana Marie Prikler
df4f960cb8
gnu: Add libconfini.
...
* gnu/packages/cpp.scm (libconfini): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:38:17 +01:00
Vinicius Monego
2d92b3bbb6
gnu: shotcut: Update to 21.10.31.
...
* gnu/packages/video.scm (shotcut): Update to 21.10.31.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
Vinicius Monego
82e5a1b4c3
gnu: kdenlive: Update to 21.08.3.
...
* gnu/packages/kde.scm (kdenlive): Update to 21.08.3.
[arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are
currently disabled.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
Vinicius Monego
6fc0cfe1b5
gnu: mlt: Update to 7.2.0.
...
* gnu/packages/video.scm (mlt): Update to 7.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
jgart
e8d5dd5c9b
gnu: ccls: Update to 0.20210330.
...
* gnu/packages/cpp.scm (ccls): Update to 0.20210330.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:26:05 +01:00
Artyom V. Poptsov
a4cc1ae446
gnu: guile-udev: Update to 0.2.0
...
* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:05:28 +01:00
Ludovic Courtès
e080e35dc1
gnu: glade: Remove dependency on GJS on non-x86_64.
...
* gnu/packages/gnome.scm (glade3)[arguments]: Add optional
'skip-gjs-test' phase.
[native-inputs]: Provide GJS only when 'target-x86-64?'.
2021-12-02 14:59:57 +01:00
Ludovic Courtès
689d141cd8
gnu: Remove librsvg@2.50 from the Xfce dependency graph.
...
This allows us to build Xfce on non-x86_64 platforms.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Use
'librsvg-for-system' instead of 'librsvg'.
* gnu/packages/gtk.scm (guile-rsvg)[inputs]: Likewise.
* gnu/packages/xfce.scm (xfce4-xkb-plugin)[inputs]: Likewise.
2021-12-02 14:59:57 +01:00
Ludovic Courtès
d371abbd0f
gnu: librsvg: Add 'librsvg-for-system' procedure.
...
* gnu/packages/gnome.scm (librsvg-for-system): New procedure.
2021-12-02 14:59:56 +01:00
Ludovic Courtès
8477a6d743
gnu: librsvg: Reintroduce version 2.40.
...
* gnu/packages/gnome.scm (librsvg-2.40): New variable.
2021-12-02 14:59:56 +01:00
Ricardo Wurmus
46b73fd22d
gnu: python-ipython: Update to 7.20.0.
...
* gnu/packages/python-xyz.scm (python-ipython): Update to 7.20.0.
2021-12-02 13:42:17 +01:00
Ricardo Wurmus
5723503f9f
gnu: python-ipython: Remove trailing #T.
...
* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Remove trailing #T
from build phases.
2021-12-02 13:42:17 +01:00
Efraim Flashner
923a121751
gnu: yggdrasil: Simplify build phases.
...
* gnu/packages/networking.scm (yggdrasil)[arguments]: Rewrite custom
'build phase reusing go-build-system 'build phase. Remove custom
'install phase.
2021-12-02 14:28:06 +02:00
Efraim Flashner
d19e646c83
gnu: go-golang-zx2c4-com-wireguard: Fix downloading source.
...
* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard)[source]:
Adjust commit string in git-reference.
2021-12-02 14:13:27 +02:00
Efraim Flashner
e0755470f8
gnu: go-github-com-vividcortex-ewma: Adjust import-path.
...
* gnu/packages/golang.scm (go-github-com-vividcortex-ewma)[arguments]:
Adjust import-path to location other go packages expect it to be.
2021-12-02 14:12:31 +02:00
Ludovic Courtès
052f56e5a6
gnu: guix: Update to 8cc099b.
...
* gnu/packages/package-management.scm (guix): Update to 8cc099b
2021-12-02 12:52:59 +01:00
Ricardo Wurmus
a8fff63daa
gnu: Add python-mygene.
...
* gnu/packages/bioinformatics.scm (python-mygene): New variable.
2021-12-02 11:57:28 +01:00
Ricardo Wurmus
b15a525703
gnu: Add python-biothings-client.
...
* gnu/packages/bioinformatics.scm (python-biothings-client): New variable.
2021-12-02 11:57:13 +01:00
Ricardo Wurmus
37c475ebc0
gnu: prinseq: Fix use of SEARCH-INPUT-FILE.
...
* gnu/packages/bioinformatics.scm (prinseq)[arguments]: Pass missing argument
to SEARCH-INPUT-FILE.
2021-12-02 11:26:55 +01:00
Ricardo Wurmus
f1fd313e48
gnu: gnome-shell: Do not wrap in LD_LIBRARY_PATH.
...
Fixes <https://bugs.gnu.org/37123 >.
* gnu/packages/gnome.scm (gnome-shell)[arguments]: Remove LD_LIBRARY_PATH from
wrapper.
2021-12-02 10:52:45 +01:00
Ricardo Wurmus
e1cb787870
gnu: python2-matplotlib: Disable sanity-check.
...
* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Delete
'sanity-check phase.
2021-12-02 10:30:40 +01:00
Ricardo Wurmus
a33ca53492
gnu: python2-matplotlib: Remove trailing #T.
...
* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Remove
trailing #T from build phase.
2021-12-02 10:29:59 +01:00
Efraim Flashner
c14ab97a03
Revert "gnu: Change source file-name suffix in rust packages."
...
This reverts commit 07a80e30a1
2021-12-02 11:10:37 +02:00
Efraim Flashner
e577889828
gnu: tor: Limit test suite adjustments to affected architectures.
...
This is a follow-up to 68d090002a
2021-12-02 11:07:18 +02:00
Ricardo Wurmus
c2c63a00de
gnu: Add r-scdblfinder.
...
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
2021-12-02 10:03:07 +01:00
Ricardo Wurmus
24832d2ebd
gnu: python2-numpy: Delete file that depends on deleted test.
...
This is a follow-up to commit ec4892c742
2021-12-02 09:45:24 +01:00
Z572
07a80e30a1
gnu: Change source file-name suffix in rust packages.
...
* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source
file-name suffix from '.crate' to '.tar.gz'.
* gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise.
(rust-ansi-term-0.11): Likewise.
(rust-rgb-0.8): Likewise.
* gnu/packages/crates-io.scm (rust-adler32-1): Likewise.
(rust-antidote-1): Likewise.
(rust-atty-0.2): Likewise.
(rust-autocfg-0.1): Likewise.
(rust-backtrace-sys-0.1): Likewise.
(rust-base-x-0.2): Likewise.
(rust-bencher-0.1): Likewise.
(rust-bitflags-1): Likewise.
(rust-blas-sys-0.7): Likewise.
(rust-cargon-0.0): Likewise.
(rust-cblas-sys-0.1): Likewise.
(rust-cc-1): Likewise.
(rust-cfg-if-0.1): Likewise.
(rust-clang-sys-0.26): Likewise.
(rust-clap-2): Likewise.
(rust-clicolors-control-1): Likewise.
(rust-cloudabi-0.1): Likewise.
(rust-cloudabi-0.0): Likewise.
(rust-cmake-0.1): Likewise.
(rust-compiler-builtins-0.1): Likewise.
(rust-constant-time-eq-0.1): Likewise.
(rust-core-foundation-sys-0.6): Likewise.
(rust-data-encoding-2): Likewise.
(rust-defmac-0.2): Likewise.
(rust-defmac-0.1): Likewise.
(rust-dirs-1): Likewise.
(rust-discard-1): Likewise.
(rust-doc-comment-0.3): Likewise.
(rust-dtoa-0.4): Likewise.
(rust-dtoa-0.2): Likewise.
(rust-fallible-iterator-0.2): Likewise.
(rust-filetime-0.2): Likewise.
(rust-findshlibs-0.5): Likewise.
(rust-fixedbitset-0.2): Likewise.
(rust-fixedbitset-0.1): Likewise.
(rust-fnv-1): Likewise.
(rust-foreign-types-shared-0.2): Likewise.
(rust-fs-extra-1): Likewise.
(rust-fuchsia-cprng-0.1): Likewise.
(rust-fuchsia-zircon-0.3): Likewise.
(rust-fuchsia-zircon-sys-0.3): Likewise.
(rust-futures-0.1): Likewise.
(rust-futures-core-preview-0.3): Likewise.
(rust-futures-cpupool-0.1): Likewise.
(rust-futures-io-preview-0.3): Likewise.
(rust-futures-sink-preview-0.3): Likewise.
(rust-getopts-0.2): Likewise.
(rust-glob-0.3): Likewise.
(rust-glob-0.2): Likewise.
(rust-heapsize-0.4): Likewise.
(rust-heapsize-0.3): Likewise.
(rust-heapsize-plugin-0.1): Likewise.
(rust-heck-0.3): Likewise.
(rust-hex-0.3): Likewise.
(rust-hex-0.2): Likewise.
(rust-hostname-0.1): Likewise.
(rust-iovec-0.1): Likewise.
(rust-itoa-0.4): Likewise.
(rust-itoa-0.1): Likewise.
(rust-json-0.11): Likewise.
(rust-kernel32-sys-0.2): Likewise.
(rust-language-tags-0.2): Likewise.
(rust-lazy-static-1): Likewise.
(rust-libloading-0.5): Likewise.
(rust-lock-api-0.1): Likewise.
(rust-log-0.4): Likewise.
(rust-maplit-1): Likewise.
(rust-matches-0.1): Likewise.
(rust-matrixmultiply-0.2): Likewise.
(rust-matrixmultiply-0.1): Likewise.
(rust-md5-0.7): Likewise.
(rust-md5-0.6): Likewise.
(rust-memmap-0.7): Likewise.
(rust-memmap-0.6): Likewise.
(rust-mime-0.3): Likewise.
(rust-miniz-oxide-0.3): Likewise.
(rust-miniz-sys-0.1): Likewise.
(rust-miow-0.3): Likewise.
(rust-miow-0.2): Likewise.
(rust-modifier-0.1): Likewise.
(rust-net2-0.2): Likewise.
(rust-nodrop-0.1): Likewise.
(rust-nodrop-union-0.1): Likewise.
(rust-num-traits-0.1): Likewise.
(rust-numtoa-0.1): Likewise.
(rust-openssl-probe-0.1): Likewise.
(rust-owning-ref-0.4): Likewise.
(rust-parity-wasm-0.40): Likewise.
(rust-peeking-take-while-0.1): Likewise.
(rust-percent-encoding-2): Likewise.
(rust-percent-encoding-1): Likewise.
(rust-permutohedron-0.2): Likewise.
(rust-pico-sys-0.0): Likewise.
(rust-pkg-config-0.3): Likewise.
(rust-plain-0.2): Likewise.
(rust-plugin-0.2): Likewise.
(rust-pocket-resources-0.3): Likewise.
(rust-ppv-lite86-0.2): Likewise.
(rust-proc-macro2-1): Likewise.
(rust-quick-error-2): Likewise.
(rust-quick-error-1): Likewise.
(rust-quote-1): Likewise.
(rust-rand-0.7): Likewise.
(rust-rand-0.6): Likewise.
(rust-rand-0.3): Likewise.
(rust-rand-chacha-0.1): Likewise.
(rust-rand-core-0.4): Likewise.
(rust-rand-core-0.3): Likewise.
(rust-rand-hc-0.2): Likewise.
(rust-rand-hc-0.1): Likewise.
(rust-rand-isaac-0.1): Likewise.
(rust-rand-jitter-0.1): Likewise.
(rust-rand-os-0.1): Likewise.
(rust-rand-pcg-0.3): Likewise.
(rust-rand-pcg-0.2): Likewise.
(rust-rand-pcg-0.1): Likewise.
(rust-rand-xorshift-0.1): Likewise.
(rust-rawpointer-0.2): Likewise.
(rust-rawpointer-0.1): Likewise.
(rust-rdrand-0.4): Likewise.
(rust-redox-syscall-0.1): Likewise.
(rust-redox-termios-0.1): Likewise.
(rust-resolv-conf-0.6): Likewise.
(rust-rustc-demangle-0.1): Likewise.
(rust-rustc-serialize-0.3): Likewise.
(rust-rustc-std-workspace-core-1): Likewise.
(rust-ryu-1): Likewise.
(rust-safemem-0.3): Likewise.
(rust-same-file-1): Likewise.
(rust-schannel-0.1): Likewise.
(rust-scoped-threadpool-0.1): Likewise.
(rust-scoped-tls-1): Likewise.
(rust-scoped-tls-0.1): Likewise.
(rust-scopeguard-1): Likewise.
(rust-scopeguard-0.3): Likewise.
(rust-security-framework-sys-0.3): Likewise.
(rust-semver-parser-0.9): Likewise.
(rust-semver-parser-0.7): Likewise.
(rust-serde-derive-1): Likewise.
(rust-shlex-1): Likewise.
(rust-shlex-0.1): Likewise.
(rust-slab-0.4): Likewise.
(rust-socket2-0.3): Likewise.
(rust-sourcefile-0.1): Likewise.
(rust-spin-0.5): Likewise.
(rust-stacker-0.1): Likewise.
(rust-static-assertions-1): Likewise.
(rust-static-assertions-0.3): Likewise.
(rust-stdweb-internal-runtime-0.1): Likewise.
(rust-stdweb-internal-test-macro-0.1): Likewise.
(rust-streaming-stats-0.2): Likewise.
(rust-strsim-0.9): Likewise.
(rust-strsim-0.8): Likewise.
(rust-synstructure-test-traits-0.1): Likewise.
(rust-tar-0.4): Likewise.
(rust-tempdir-0.3): Likewise.
(rust-tempfile-3): Likewise.
(rust-term-0.4): Likewise.
(rust-term-0.2): Likewise.
(rust-termcolor-1): Likewise.
(rust-termion-1): Likewise.
(rust-termios-0.3): Likewise.
(rust-thread-id-3): Likewise.
(rust-thread-local-1): Likewise.
(rust-thread-local-0.3): Likewise.
(rust-threadpool-1): Likewise.
(rust-time-0.1): Likewise.
(rust-tokio-mock-task-0.1): Likewise.
(rust-toml-0.5): Likewise.
(rust-tracing-core-0.1): Likewise.
(rust-traitobject-0.1): Likewise.
(rust-try-from-0.3): Likewise.
(rust-try-lock-0.2): Likewise.
(rust-typeable-0.1): Likewise.
(rust-typemap-0.3): Likewise.
(rust-typenum-1): Likewise.
(rust-ucd-trie-0.1): Likewise.
(rust-ucd-util-0.1): Likewise.
(rust-unicode-xid-0.2): Likewise.
(rust-unicode-xid-0.1): Likewise.
(rust-unreachable-1): Likewise.
(rust-unsafe-any-0.4): Likewise.
(rust-untrusted-0.7): Likewise.
(rust-vcpkg-0.2): Likewise.
(rust-vec-map-0.8): Likewise.
(rust-version-check-0.9): Likewise.
(rust-version-check-0.1): Likewise.
(rust-void-1): Likewise.
(rust-wasi-0.5): Likewise.
(rust-wasm-bindgen-shared-0.2): Likewise.
(rust-wasm-bindgen-test-macro-0.2): Likewise.
(rust-widestring-0.4): Likewise.
(rust-winapi-0.3): Likewise.
(rust-winapi-0.2): Likewise.
(rust-winapi-build-0.1): Likewise.
(rust-winapi-util-0.1): Likewise.
(rust-wincolor-1): Likewise.
(rust-winutil-0.1): Likewise.
(rust-ws2-32-sys-0.2): Likewise.
(rust-xattr-0.2): Likewise.
(rust-xdg-2): Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-02 10:24:17 +02:00
Leo Famulari
bef86fed3e
Revert "gnu: godot: Update to 3.4."
...
This reverts commit dd4365efa1https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20
2021-12-02 01:27:12 -05:00
cage
934a246409
gnu: cl-tooter: Update to 1.0.0-3.ec97bee.
...
* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:12:58 -05:00
cage
e9e2204897
gnu: cl-i18n: Update to 0.5.1-1.4216fe9.
...
* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:12:57 -05:00
Andy Tai
dd4365efa1
gnu: godot: Update to 3.4.
...
* gnu/packages/game-development.scm (godot): Update to 3.4.
[source]: Add new bundled dependencies to the origin snippet.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:02:47 -05:00
Ricardo Wurmus
ec4892c742
gnu: python2-numpy: Do not inherit native-inputs.
...
* gnu/packages/python-xyz.scm (python2-numpy)[native-inputs]: Do not inherit
from Python 3 variant; use only python2-cython, python2-pytest, and gfortran.
[arguments]: Add phase 'delete-failing-test.
2021-12-02 01:20:43 +01:00
Leo Famulari
7a171235af
gnu: linux-libre 4.19: Update to 4.19.219.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219.
(linux-libre-4.19-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
Leo Famulari
6f18f35297
gnu: linux-libre 5.4: Update to 5.4.163.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163.
(linux-libre-5.4-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
Leo Famulari
f01588736c
gnu: linux-libre 5.10: Update to 5.10.83.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83.
(linux-libre-5.10-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
Leo Famulari
c3ec5eaa75
gnu: linux-libre: Update to 5.15.6.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6.
(linux-libre-5.15-pristine-source): Update hash.
2021-12-01 18:43:02 -05:00
Ricardo Wurmus
d53679c531
gnu: Remove couger.
...
This package has been moved to the Guix Past channel.
* gnu/packages/bioinformatics.scm (couger): Remove variable.
2021-12-02 00:32:12 +01:00
Ricardo Wurmus
cd40978a4b
gnu: randomjungle: Fix compatibility errors.
...
* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
2021-12-02 00:32:12 +01:00
Ludovic Courtès
36f18626a9
gnu: petsc-{complex,openmpi,complex-openmpi}: Use gexps.
...
This is a followup to 07ac13a26a
2021-12-01 23:30:15 +01:00
Ludovic Courtès
725d35aa9a
gnu: scalapack: Update to 2.1.0.
...
* gnu/packages/maths.scm (scalapack): Update to 2.1.0.
[source]: Remove "scalapack-blacs-mpi-deprecations.patch" and add
"scalapack-gcc-10-compilation.patch".
[arguments]: Add 'skip-faulty-test' phase.
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: Remove.
* gnu/packages/patches/scalapack-gcc-10-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-12-01 23:30:15 +01:00
Jonathan Brielmaier
205a65839a
news: Add entry about Icedove 91.
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* etc/news.scm: New entry.
2021-12-01 22:52:02 +01:00
Jonathan Brielmaier
a63231003e
gnu: icecat: Remove leftovers of release 78.
...
No longer required as icedove is now based on the 91 branch.
* gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove.
(all-mozilla-78-locales): Remove.
(%icecat-78-version): Remove.
(icecat-78-source): Remove.
2021-12-01 22:07:00 +01:00
Jonathan Brielmaier
52cb5cf5b8
gnu: icedove: Update to 91.3.2.
...
The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may
need to migrate (copy) your profile over.
* gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2.
[source]: Switch back to icecat-source.
[arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during
build, so it can't deleted in front. Remove surounding `'` from
MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and
MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update
path of `customizeToolbar.js`.
Delete `'bootstrap` phase and no longer set AUTOCONF variable as the
autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and
MOZ_APP_NAME, the latter is the binary name.
`--enable-calendar` flag got removed. Use bundled NSS until
core-updates merge.
[inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now.
[native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4.
Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`.
2021-12-01 22:07:00 +01:00
Jonathan Brielmaier
f1a2e90409
gnu: Add nspr@4.32.
...
Required for icecat/icedove 91.
* gnu/packages/nss.scm (nspr-4.32): New variable.
2021-12-01 22:06:54 +01:00
Nicolas Goaziou
d7d7b57965
gnu: emacs-citar: Remove unnecessary input.
...
* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex.
2021-12-01 22:00:45 +01:00
Andy Tai
2b08cc968b
gnu: bullet: Update to 3.17.
...
* gnu/packages/game-development.scm (bullet): Update to 3.17.
[arguments]<#:configure-flags>: Disable access to third-party libs.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 21:54:41 +01:00
Mathieu Othacehe
d64b78ef0c
installer: parted: Use the swap-space record.
...
* gnu/installer/parted.scm (user-partitions->configuration): Use the
swap-space record.
2021-12-01 20:59:06 +01:00
