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Author SHA1 Message Date
Leo Famulari
87b5209558
gnu: mpd: Install systemd service files. 
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
 2016-12-29 17:28:34 -05:00
Ricardo Wurmus
76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
 2016-12-29 22:24:12 +01:00
Ricardo Wurmus
2f642e5229
gnu: r-biostrings: Update to 2.42.1. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
72c2693b9e
gnu: r-limma: Update to 3.30.7. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
5796af9981
gnu: r-variantannotation: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
5d3acc0b36
gnu: r-edger: Update to 3.16.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
54d9b568fc
gnu: r-iranges: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus
c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus
007ee80277
gnu: r-deseq2: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus
d0f0579e6f
gnu: r-annotate: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
 2016-12-29 22:24:10 +01:00
Leo Famulari
a57495e27a
gnu: khard: Update to 0.11.3. 
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
 2016-12-29 16:12:13 -05:00
Ricardo Wurmus
35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus
28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus
ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
b1c1f4d012
gnu: armadillo: Update to 7.600.2. 
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus
c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus
eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus
421f7772b4
gnu: r-qtl: Update to 1.40-8. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus
58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus
eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus
9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus
c616810720
gnu: r-htmlwidgets: Update to 0.8. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus
f4ca28d911
gnu: r-curl: Update to 2.3. 
* gnu/packages/web.scm (r-curl): Update to 2.3.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus
d3122150ca
gnu: r-servr: Update to 0.5. 
* gnu/packages/web.scm (r-servr): Update to 0.5.
 2016-12-29 21:49:08 +01:00
Alex Kost
deb6276dda
Remove Emacs interface. 
* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:40:24 +03:00
Ricardo Wurmus
94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal
2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal
294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal
649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal
6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal
069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Leo Famulari
fc604eda3d
gnu: libpng-1.2: Update to 1.2.57 [security update]. 
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
 2016-12-29 13:41:43 -05:00
Leo Famulari
322e724bfa
gnu: libpng: Fix a null pointer dereference [fixes security issue]. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
 2016-12-29 13:36:00 -05:00
Leo Famulari
d835c6cc4b
gnu: mpd: Update to 0.19.21. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.21.
 2016-12-29 11:30:31 -05:00
ng0
b954256337
gnu: rustc: Update to 1.14.0. 
* gnu/packages/rust.scm (rustc): Update to 1.14.0.
  %rust-bootstrap-binaries: Update to 1.13.0.

Signed-off-by: David Craven <david@craven.ch>
 2016-12-29 12:38:23 +01:00
Ricardo Wurmus
e62e975b1f
gnu: mu: Avoid bootstrapping. 
* gnu/packages/mail.scm (mu)[arguments]: Rename "patch-configure.ac" to
"patch-configure" and only patch "configure" script; remove "autoreconf"
phase.
[native-inputs]: Remove "autoconf", "automake", "libtool", and
"texinfo".
 2016-12-29 09:20:08 +01:00
Ricardo Wurmus
e7b9da2411
gnu: mu: Update to 0.9.18. 
* gnu/packages/mail.scm (mu): Update to 0.9.18.
 2016-12-29 08:58:57 +01:00
Tobias Geerinckx-Rice
43c0b9beaf
gnu: perl-zip: Update to 1.59. 
* gnu/packages/zip.scm (perl-zip): Update to 1.59.
 2016-12-29 05:37:01 +01:00
ng0
d5bbf806f3
gnu: Add python-trollius-redis. 
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0
789de5e279
gnu: Add python-straight-plugin. 
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0
a0e41de4ab
gnu: Add python-openid-teams. 
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0
03702173f1
gnu: Add python-openid-cla. 
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0
3ef00f5609
gnu: Add python2-openid. 
* gnu/packages/python.scm (python2-openid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0
0151a8df22
gnu: Add python-pygit2. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0
460fccd4b3
gnu: Add python-munch. 
* gnu/packages/python.scm (python-munch, python2-munch): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0
9f21414de4
gnu: Add python-kitchen. 
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0
a2c7d88e74
gnu: Add python-flask-multistatic. 
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0
a7ad802be5
gnu: Add python-flask-wtf. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:45 -05:00
Tobias Geerinckx-Rice
50f7da2fc8
gnu: xonsh: Update to 0.5.1. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.1.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice
6a34f4ccc8
gnu: python-prompt-toolkit: Update to 1.0.9. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice
791ac6a68d
gnu: python-markdown: Update to 2.6.7. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice
2ee57340f4
gnu: python-numexpr: Update to 2.6.1. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice
ffb1e98d74
gnu: python-babel: Update to 2.3.4. 
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
 2016-12-29 02:38:20 +01:00
Leo Famulari
3221d1a392
gnu: icu4c: Update to 58.2. 
* gnu/packages/icu4c.scm (icu4c): Update to 58.2.
 2016-12-28 19:35:22 -05:00
Manolis Ragkousis
1d9c889881
gnu: glibc-hurd: Update to 2.23. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 2.23.
 2016-12-28 21:14:20 +02:00
Marius Bakke
517c3207d3
gnu: rofi: Update to 1.3.0. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.0.
 2016-12-28 18:00:02 +01:00
Tobias Geerinckx-Rice
48dc9f3af3
gnu: znc: Update to 1.6.4. 
* gnu/packages/messaging.scm (znc): Update to 1.6.4.
 2016-12-28 05:14:05 +01:00
Tobias Geerinckx-Rice
c09dd486a2
gnu: util-linux: Update to 2.28.2. 
* gnu/packages/linux.scm (util-linux): Update to 2.28.2.
 2016-12-27 22:24:44 +01:00
Nicolas Goaziou
4dbaa12f5d
gnu: wireshark: Update to 2.2.3. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.3.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:05:07 +01:00
Nicolas Goaziou
d531b9fdfe
gnu: emacs-org: Update to 20161224. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161224.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:03:45 +01:00
Stefan Reichoer
9e6c7c425e
gnu: Add httpstat. 
* gnu/packages/networking.scm (httpstat): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:56:34 +01:00
Thomas Danckaert
ea8450c82a
gnu: Add python-netcdf4. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:30:59 +01:00
Ricardo Wurmus
2c8d6c0be4
gnu: r-rcas: Update to 1.1.1. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1.
[propagated-inputs]: Add plotrix.
 2016-12-27 14:50:55 +01:00
Leo Famulari
1194575b3c
gnu: python-pycrypto: Add TODO "removal" comment. 
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add
comment.
 2016-12-26 19:51:54 -05:00
Leo Famulari
4de2a710a6
gnu: python-stem: Don't use python-pycrypto. 
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is
unmaintained [0] and contains an exploitable buffer overflow bug [1].

[0] https://github.com/dlitz/pycrypto/issues/173
[1] https://github.com/dlitz/pycrypto/issues/176

* gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove
python-pycrypto.
 2016-12-26 19:51:49 -05:00
ng0
91426243f1
gnu: awesome: Update to 4.0. 
* gnu/packages/wm.scm (awesome): Update to 4.0.
[source]: Adjust URL.
[inputs]: Add xcb-util-xrm and libxkbcommon.
* gnu/packages/patches/awesome-reproducible-png.patch: Adjust patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-26 19:13:27 -05:00
Ben Woodcroft
9916ef8bb6
gnu: diamond: Update to 0.8.30. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
 2016-12-27 09:18:05 +10:00
Leo Famulari
c976b319fe
gnu: python-stem: Update to 1.5.3. 
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3.
[source]: Update URL.
 2016-12-26 13:20:52 -05:00
Ben Woodcroft
f1775db660
gnu: ruby-minitest: Update to 5.10.1. 
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
 2016-12-26 22:43:59 +10:00
Roel Janssen
328398e752
gnu: Add ripit. 
* gnu/packages/cdrom.scm (ripit): New variable.
 2016-12-26 12:58:29 +01:00
Roel Janssen
fb222fb2b0
gnu: Add perl-cddb-get. 
* gnu/packages/perl.scm (perl-cddb-get): New variable.
 2016-12-26 12:45:48 +01:00
Alex Kost
b2f1f7b0d9
gnu: emacs-guix: Update to 0.2.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.1.
 2016-12-26 13:53:53 +03:00
Efraim Flashner
9f74424f37
gnu: xf86-video-qxl: Update to 0.1.5. 
* gnu/packages/xorg.scm (xf86-video-qxl): Update to 0.1.5.
 2016-12-26 04:32:05 +02:00
Ricardo Wurmus
33ca551731
gnu: Add roffit. 
* gnu/packages/groff.scm (roffit): New variable.
 2016-12-25 22:02:39 +01:00
Efraim Flashner
f077aa2b29
gnu: libevdev: Update to 1.5.5. 
* gnu/packages/xorg.scm (libevdev): Update to 1.5.5.
[houme-page]: Use https.
 2016-12-25 16:16:10 +02:00
Efraim Flashner
db10a5e78a
gnu: libinput: Update to 1.5.3. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.3.
 2016-12-25 16:16:00 +02:00
Marius Bakke
4a95b3882d
gnu: exim: Update to 4.87.1 [fixes CVE-2016-9963]. 
* gnu/packages/mail.scm (exim): Update to 4.87.1.
 2016-12-25 13:53:17 +01:00
Taylan Ulrich Bayırlı/Kammer
d02fb7cec6
gnu: leptonica: Update to 1.74.0. 
* gnu/packages/image.scm (leptonica): Update to 1.74.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-25 13:48:57 +01:00
Efraim Flashner
c88bee0ace
gnu: font-gnu-unifont: Update to 9.0.06. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 9.0.06.
 2016-12-25 05:04:20 +02:00
Leo Famulari
3a2bcac6bd
gnu: libxml2: Fix CVE-2016-5131. 
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
 2016-12-24 19:19:36 -05:00
Leo Famulari
0c83c6bf26
gnu: libxml2: Fix CVE-2016-4658. 
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-24 19:19:32 -05:00
Efraim Flashner
daa481f59a
gnu: qt: Update to 5.7.1. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtwebchannel, qtlocation,
qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects,
qtwebkit): Update to 5.7.1.
 2016-12-25 01:49:36 +02:00
Efraim Flashner
457d154fdf
gnu: alsa-utils: Update to 1.1.3. 
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.3.
 2016-12-25 01:47:22 +02:00
Efraim Flashner
7604106f2c
gnu: busybox: Update to 1.26.0. 
* gnu/packages/busybox.scm (busybox): Update to 1.26.0.
[arguments]: Enable previously broken grep test.
 2016-12-25 01:47:22 +02:00
Thomas Danckaert
db82557013
gnu: netcdf: Enable HDF4 support. 
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
  [arguments]: Add "--enable-hdf4" configure flag.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-24 14:41:50 +01:00
Marius Bakke
f7fb34a06c
gnu: notmuch: Update to 0.23.4. 
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.23.4.
 2016-12-24 14:26:39 +01:00
Tobias Geerinckx-Rice
b672e1ed1e
gnu: moreutils: Update to 5.9. 
* gnu/packages/moreutils.scm (moreutils): Update to 5.9.
[source]: Update the fall-back Debian snapshot URL.
[inputs]: Move docbook-xml, docbook-xsl, libxml2, and libxslt from here...
[native-inputs]: ...to this new variable.
[arguments]: Delete the configure phase altogether.  Set the DOCBOOKXSL path
in #:make-flags instead.
[home-page]: Use HTTPS.
 2016-12-24 03:19:03 +01:00
Tobias Geerinckx-Rice
4d2fd1c016
gnu: yadifa: Explicitly enable DNSSEC & caching. 
* gnu/packages/dns.scm (yadifa)[arguments]: Add configure flags to
consistently enable the ‘nsec’, ‘nsec3’, ‘tsig’, and ‘caching’ features.
 2016-12-23 23:54:15 +01:00
Tobias Geerinckx-Rice
8769d482ef
gnu: yadifa: Update to 2.2.3. 
* gnu/packages/dns.scm (yadifa): Update to 2.2.3.
[version, source]: Remove monotonic revision number from the version
string.  Use it only to reconstruct the download URL.
 2016-12-23 23:54:15 +01:00
Kei Kebreau
eed2a95e9f
gnu: minetest: Update to 0.4.15. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.15.
 2016-12-23 17:34:41 -05:00
Tobias Geerinckx-Rice
41d23dd1e2
gnu: btrfs-progs: Update to 4.9. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.9.
 2016-12-23 20:29:18 +01:00
ng0
50e9f81a22
gnu: gnurl: Split man pages to doc output. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Add 'move-man3-pages' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:03 -05:00
ng0
4ec08b637b
gnu: gnurl: Make tests more verbose. 
* gnu/packages/gnunet.scm (gnurl)[arguments]: Replace the 'check' phase.
Move the 'disable-test1026' and 'patch-runtests' phases into 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:03 -05:00
ng0
a0e43c9fa7
gnu: gnurl: Update to 7.52.1 [fixes CVE-2016-{9586, 9952, 9953, 9594}]. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.52.1.
[arguments]: Add 'autoconf' and 'disable-test1026' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:58:02 -05:00
Chris Marusich
426e6083ae
gnu: Add asunder. 
* gnu/packages/cdrom.scm (asunder): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-23 11:34:42 -05:00
Marius Bakke
d0f1673dc3
gnu: dnscrypt-proxy: Update to 1.8.1. 
* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.8.1.
 2016-12-23 15:53:51 +01:00
Marius Bakke
14251e30c4
gnu: curl: Update replacement to 7.52.1 [fixes CVE-2016-{9586,9594}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.1.
[home-page]: Use HTTPS.
(curl-7.51.0): Replace with ...
(curl-7.52.1): ... this.
 2016-12-23 15:31:36 +01:00
Bake Timmons
b881dc6d98
gnu: Add wwwoffle. 
* gnu/packages/web.scm (wwwoffle): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 15:18:02 +01:00
Thomas Danckaert
d205f895ca
gnu: Add python-hdf4. 
* gnu/packages/python.scm (python-hdf4, python2-hdf4): New variables.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 14:51:56 +01:00
Leo Famulari
4b4ff6938d
gnu: qsyncthingtray: Update to 0.5.7. 
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.7.
 2016-12-23 02:01:28 -05:00
Kei Kebreau
e813f3956e
gnu: xonsh: Fix description. 
* gnu/packages/shells.scm (xonsh)[description]: Two spaces after a period.
 2016-12-22 18:06:56 -05:00
Efraim Flashner
a532a6711e
gnu: qtimageformats: Add jasper support. 
* gnu/packages/qt.scm (qtimageformats)[inputs]: Add jasper.
 2016-12-23 01:01:27 +02:00
Stefan Reichör
572ee05c31
gnu: xonsh: Update to 0.5.0. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.0.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-22 17:59:41 -05:00
Marius Bakke
059b3aa9c3
gnu: gnupg: Fix build on 32-bit architectures. 
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
 2016-12-22 15:05:50 +01:00
Ricardo Wurmus
8e401ab6db
gnu: python-scikit-learn: Update to 0.18.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.18.1.
[arguments]: Remove special "check" phase.
[native-inputs]: Add python-cython.
 2016-12-22 13:19:20 +01:00
Leo Famulari
8bf4a6aecd
gnu: shotwell: Update to 0.25.2. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.2.
 2016-12-22 02:54:42 -05:00
Leo Famulari
5d97f4c74a
gnu: libssh2: Update to 1.8.0. 
* gnu/packages/ssh.scm (libssh2): Update to 1.8.0.
 2016-12-22 00:17:54 -05:00
Efraim Flashner
5d0ebcc4cf
gnu: gcc: Update to 6.3.0. 
* gnu/packages/gcc.scm (gcc): Update to 6.3.0.
 2016-12-22 02:53:24 +02:00
Efraim Flashner
0d1baed223
gnu: abcde: Add flac support. 
* gnu/packages/cdrom.scm (abcde)[inputs]: Add flac.
[arguments]: Wrap the bunary with flac's bin dir also.
 2016-12-22 02:53:19 +02:00
Ricardo Wurmus
590b80d29a
Merge branch 'version-0.12.0' 2016-12-21 23:33:18 +01:00
John Darrington
d1f3063196
gnu: Fix typo in comment. 
* gnu/services/sddm.scm: Fix typo.
 2016-12-21 20:45:34 +01:00
Efraim Flashner
d229ba9502
gnu: qemu: Update to 2.8.0. 
* gnu/packages/qemu.scm (qemu): Update to 2.8.0.
[source]: Remove patches.
[arguments]: Set host_cc during 'configure.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-12-21 21:28:15 +02:00
Julien Lepiller
4da696877c
gnu: coq: Build coqide 
* gnu/packages/ocaml.scm (coq): Build coqide.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-21 17:54:18 +01:00
Julien Lepiller
8afd19585f
gnu: lablgtk: use ocamlfind in installation 
* gnu/packages/ocaml.scm (lablgtk): Use ocamlfind in installation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-21 17:54:18 +01:00
Julien Lepiller
054fea97b7
gnu: lablgtk: Update to 2.18.5 
* gnu/packages/ocaml.scm (lablgtk): Update to 2.18.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-21 17:54:18 +01:00
Leo Famulari
c8c385a04a
Revert "gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}]." 
The curl maintainers said this about 7.52.0:

"Attention! We will release a patch update within a few days to fix a
serious security problem found in curl 7.52.0. You may consider holding
off until then."

This message was displayed at <https://curl.haxx.se/download.html> on
2016-12-21.

This reverts commit 42366b35c3.
 2016-12-21 11:52:36 -05:00
Tobias Geerinckx-Rice
f05f5b307e
gnu: mlt: Update to 6.4.1. 
* gnu/packages/video.scm (mlt): Update to 6.4.1.
 2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice
9fa7284155
gnu: jsoncpp: Update to 1.8.0. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.0.
 2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice
e177f819c0
gnu: xf86-video-vmware: Update to 13.2.1. 
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.2.1.
[native-inputs]: Add eudev.
 2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice
7aef9930f0
gnu: xcb-util-xrm: Update to 1.2. 
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.2.
 2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice
82f44a36e4
gnu: xcape: Update to 1.2. 
* gnu/packages/xdisorg.scm (xcape): Update to 1.2.
 2016-12-21 16:37:00 +01:00
Marius Bakke
42366b35c3
gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.0.
(curl-7.51.0): Replace with ...
(curl-7.52.0): ... this.
 2016-12-21 14:56:34 +01:00
Ludovic Courtès
7af6ecab6e
gnu: guix: Really skip "pivot-root" test. 
This is a followup to fe9bdb581e (which
introduced 'test-equal' for the "pivot-root" test) and to
198eac2bca (which updated the regexps for
skipped tests.)

* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'disable-container-tests' phase, add "test-equal" to the regexp, so that
"pivot-root" is really skipped.
 2016-12-21 14:28:28 +01:00
Ricardo Wurmus
7aa8785c41
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to b291b327.
 2016-12-21 10:32:17 +01:00
Ludovic Courtès
b291b3271a
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el. 
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
 2016-12-21 10:22:32 +01:00
Leo Famulari
6a148b9db5
gnu: imagemagick: Update to 6.9.7-0. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-0.
 2016-12-20 20:50:50 -05:00
Marius Bakke
21eced80a0
gnu: nmap: Update to 7.40. 
* gnu/packages/admin.scm (nmap): Update to 7.40.
 2016-12-21 00:14:08 +01:00
Ludovic Courtès
64b5e41376
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el. 
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
 2016-12-20 23:39:30 +01:00
Efraim Flashner
899358d18a
gnu: msmtp: Update to 1.6.6. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.6.
 2016-12-20 22:43:07 +02:00
Efraim Flashner
837ca0f071
gnu: getmail: Update to 4.52.0. 
* gnu/packages/mail.scm (getmail): Update to 4.52.0.
 2016-12-20 22:43:06 +02:00
Efraim Flashner
c55fa42b2d
gnu: bogofilter: Use 'modify-phases'. 
* gnu/packages/mail.scm (bogofilter)[arguments]: Use 'modify-phases'.
 2016-12-20 22:43:06 +02:00
Efraim Flashner
329e0a9ca0
gnu: mutt: Update to 1.7.2. 
* gnu/packages/mail.scm (mutt): Update to 1.7.2.
 2016-12-20 22:43:06 +02:00
Efraim Flashner
de75f0b1bf
gnu: mailutils: Use 'modify-phases' syntax. 
* gnu/packages/mail.scm (mailutils)[arguments]: Use 'modify-phases'.
 2016-12-20 22:43:06 +02:00
Efraim Flashner
abe5d2dc8d
gnu: mailutils: Update to 3.1.1. 
* gnu/packages/mail.scm (mailutils): Update to 3.1.1.
[inputs]: Build with current readline.
[arguments]: Set sysconfdir as /etc.
[home-page]: Use https.
 2016-12-20 22:43:05 +02:00
Efraim Flashner
e31d35de3f
gnu: gnupg: Remove unneeded input. 
* gnu/packages/gnupg.scm (gnupg)[inputs]: Remove adns.
 2016-12-20 22:43:01 +02:00
Leo Famulari
8cb3e7e7de
gnu: borg: Update to 1.0.9. 
* gnu/packages/backup.scm (borg): Update to 1.0.9.
[arguments]: Run the check phase in its own directory. Skip the test
'test_get_security_dir'.
 2016-12-20 14:50:19 -05:00
Leo Famulari
4f6ff977c2
gnu: nss: Add comment about test failures in NSS 3.27.2 
* gnu/packages/gnuzilla.scm (nss): Add comment.
 2016-12-20 14:44:53 -05:00
Leo Famulari
6eda11de44
Revert "gnu: nss, nss-certs: Update to 3.27.2." 
This reverts commit 7ab3ea4266.
 2016-12-20 14:35:21 -05:00
Ricardo Wurmus
62a3179395
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to c8e2219c.
(guix): Set to GUIX-DEVEL.
 2016-12-20 18:06:00 +01:00
Ricardo Wurmus
c8e2219cfb
gnu: guix: Update to 0.12.0. 
* gnu/packages/package-management.scm (guix-0.11.0): Rename to...
(guix-0.12.0): ... this.  Adjust users.
(guix): Set to GUIX-0.12.0.
 2016-12-20 17:58:06 +01:00
ng0
7d2511bc6b
gnu: Add alsa-plugins. 
* gnu/packages/linux.scm (alsa-plugins): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-20 10:22:06 -05:00
Marius Bakke
06fcd4a89e
gnu: gnupg: Update to 2.1.17. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.17.
 2016-12-20 15:48:24 +01:00
Ludovic Courtès
38d6aa05e2
services: cuirass: Add Cuirass to the system profile. 
* gnu/services/cuirass.scm (cuirass-service-type): Extend
PROFILE-SERVICE-TYPE.
 2016-12-20 10:27:08 +01:00
Ludovic Courtès
379b6ba5a9
services: cuirass: Add 'cuirass' field. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[cuirass]: New
field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.
 2016-12-20 10:27:08 +01:00
Ludovic Courtès
4a78638f1f
gnu: cuirass: Make sure 'cuirass' has 'evaluate' in $PATH. 
* gnu/packages/ci.scm (cuirass)[arguments]: Add OUT/bin to 'PATH'.
 2016-12-20 10:27:08 +01:00
Ludovic Courtès
137f8df66c
services: cuirass: Create the database directory. 
* gnu/services/cuirass.scm (cuirass-activation): Create the database
directory for CONFIG.
 2016-12-20 10:27:08 +01:00
John Darrington
8c4e99cca3
gnu: Fix load-extension path in packaging of guile-ncurses. 
* gnu/packages/guile.scm (guile-ncurses) [arguments]: Install shared object before
attempting to build the package.  Patch load-extension path before building instead
of after.
 2016-12-20 06:43:29 +01:00
Tobias Geerinckx-Rice
1feeb2e035
gnu: argon2: Update to 20161029. 
* gnu/packages/password-utils.scm (argon2): Update to 20161029.
 2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice
934ba12f3d
gnu: cppcheck: Update to 1.76.1. 
* gnu/packages/check.scm (cppcheck): Update to 1.76.1.
 2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice
17c2294c24
gnu: hunspell: Add missing perl dependency. 
* gnu/packages/libreoffice.scm (hunspell)[inputs]: Add perl dependency
for ispellaff2myspell.
 2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice
4dec10baa8
gnu: hunspell: Update to 1.5.4. 
* gnu/packages/libreoffice.scm (hunspell): Update to 1.5.4.
[source]: Add a file-name.
 2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice
d36935cdd1
gnu: Add Ancient Greek Aspell dictionary. 
* gnu/packages/aspell.scm (aspell-dict-grc): New variable.
 2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice
707ee32471
gnu: aspell-dictionary: Use ‘modify-phases’ syntax. 
* gnu/packages/aspell.scm (aspell-dictionary)[arguments]: Use
‘modify-phases’.
 2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice
f87b8e25c3
gnu: weechat: Use new xz-compressed tarball. 
* gnu/packages/irc.scm (weechat)[source]: Use ‘.tar.xz’ source.
 2016-12-20 05:36:56 +01:00
Tobias Geerinckx-Rice
33d5b2464d
gnu: cutadapt: Use ‘modify-phases’ syntax. 
* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Use
‘modify-phases’.
 2016-12-20 05:36:55 +01:00
Efraim Flashner
2fb5af2c2b
gnu: enlightenment: Update to 0.21.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.5.
 2016-12-20 04:22:29 +02:00
Efraim Flashner
0870372159
gnu: tor: Update to 0.2.9.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.9.8.
 2016-12-20 03:55:38 +02:00
Ludovic Courtès
dc0ef095b3
services: guix: Add 'log-file' configuration option. 
* gnu/services/base.scm (<guix-configuration>)[log-file]: New field.
(guix-shepherd-service): Pass #:log-file to 'make-forkexec-constructor'.
* gnu/services/admin.scm (simple-rotation-config): Take a list of
files and join them with commas.
(%default-rotations): Add /var/log/guix-daemon.log.
* doc/guix.texi (Base Services): Document it.
 2016-12-19 23:57:20 +01:00
Ludovic Courtès
f78903f363
services: guix: Remove dependency on lsh. 
* gnu/services/base.scm (<guix-configuration>)[lsh]: Remove.
(guix-shepherd-service): Remove lsh from 'PATH'.
* doc/guix.texi (Base Services): Adjust accordingly.
 2016-12-19 23:57:19 +01:00
Ludovic Courtès
463995da0c
services: cuirass: Cache defaults to /var/cache/cuirass. 
The previous default value depended on the 'HOME' environment variable,
which happened to be unset.  Thus, /.cache was being used.

* gnu/services/cuirass.scm (<cuirass-configuration>)[cache-directory]:
Change default value to "/var/cache/cuirass".
(cuirass-shepherd-service): Always pass "--cache-directory".
(cuirass-activation): New procedure.
(cuirass-service-type): Use it as an extension to
ACTIVATION-SERVICE-TYPE.
* doc/guix.texi (Continuous Integration): Adjust accordingly.
 2016-12-19 23:57:19 +01:00
Ludovic Courtès
831071b84f
services: cuirass: Honor 'user' and 'group'. 
* gnu/services/cuirass.scm (cuirass-shepherd-service): Pass the user and
group of CONFIG to 'make-forkexec-constructor'.
 2016-12-19 23:57:19 +01:00
Ludovic Courtès
b17e326f17
services: cuirass: Add 'log-file' option. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[log-file]: New
field.
(cuirass-shepherd-service): Pass it to 'make-forkexec-constructor'.
 2016-12-19 23:57:19 +01:00
Ludovic Courtès
2eadd8285a
gnu: cuirass: Add Git to 'PATH'. 
* gnu/packages/ci.scm (cuirass)[arguments]: In 'wrap-program' phase, add
Git to 'PATH'.
[inputs]: Add GIT.
 2016-12-19 23:57:18 +01:00
ng0
c27b31e8d2
gnu: utox: Fix description. 
* gnu/packages/messaging.scm (utox): Fix description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 23:57:18 +01:00
ng0
c413c6ade8
gnu: utox: Update to 0.11.0. 
* gnu/packages/messaging.scm (utox): Update to 0.11.0.
[source]: Update source uri to new group namespace on github.
[build-system]: Change to cmake-build-system.
[arguments]: Remove previous content and disable tests,
add two new phases.
[inputs]: Remove libtoxcore, add c-toxcore.
[native-inputs]: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 23:57:18 +01:00
ng0
0ed5554a01
gnu: Add c-toxcore. 
* gnu/packages/messaging.scm (c-toxcore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 23:57:18 +01:00
Ludovic Courtès
58b21e1e09
install: The list of services is now a plain list. 
* gnu/system/install.scm (installation-services): Rename to...
(%installation-services): ... this.  Turn into a list instead of a thunk.
 2016-12-19 23:57:18 +01:00
Marius Bakke
acb5f7c3fc
gnu: Add grub-efi. 
* gnu/packages/grub.scm (grub-efi): New variable.
 2016-12-19 23:43:47 +01:00
Marius Bakke
7d0910d4a7
Revert "gnu: grub: Add dependency on efibootmgr." 
This reverts commit 3eee16130d.

Reverted in favor of separate grub-efi package. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2016-12/msg00765.html .
 2016-12-19 23:43:47 +01:00
Marius Bakke
7d8f7ab9be
gnu: grub: Use qemu-minimal for tests. 
* gnu/packages/grub.scm (qemu-for-tests): Remove variable.
(grub)[native-inputs]: Replace QEMU-FOR-TESTS with QEMU-MINIMAL.
 2016-12-19 23:43:09 +01:00
Tobias Geerinckx-Rice
8d1ef002ee
gnu: linux-libre: Fix typo. 
* gnu/packages/linux.scm (%linux-libre-hash): Remove excess quote.
 2016-12-19 20:42:19 +01:00
Tobias Geerinckx-Rice
1f94bff2d4
gnu: cutadapt: Update to 1.12. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12.
[inputs]: Add python-xopen.
 2016-12-19 20:33:32 +01:00
Tobias Geerinckx-Rice
361a2fcf8d
gnu: Add python-xopen. 
* gnu/packages/python.scm (python-xopen, python2-xopen): New variables.
 2016-12-19 20:33:31 +01:00
Mark H Weaver
565775399e
gnu: linux-libre: Update to 4.8.15. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.15.
 2016-12-19 14:07:27 -05:00
Mark H Weaver
9cedffe5db
Revert "gnu: linux-libre: Update to 4.9." 
This reverts commit 5a3849443a.

Module loading is broken on i686 with some configurations, including our
default configuration.  See <https://bugs.gnu.org/25231>.
 2016-12-19 14:03:41 -05:00
Thomas Danckaert
834d12226b
gnu: kdbusaddons: Embed kinit store dir, avoid dependency cycles. 
kdbusaddons needs to know the location of the kdeinit5 executable,
provided by kinit. kinit depends on kdbusaddons, so we add bootstrap
versions of all packages in the dependency chain from kinit to
kdbusaddons to avoid cyclic dependencies.

* gnu/packages/kde-frameworks.scm (kinit-bootstrap,
  kdbusaddons-bootstrap): New variables.
  (kdbusaddons)[inputs]: Add kinit-bootstrap.
  [source,arguments]: Add patch and substitution to embed
  kinit-bootstrap's store directory in the code.
* gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-19 17:51:00 +01:00
Ludovic Courtès
9fc037fe10
services: Use 'file-append' in more places. 
* gnu/services/avahi.scm (avahi-shepherd-service): Use #$(file-append x y)
instead of (string-append #$x y).
* gnu/services/base.scm (unicode-start)
(console-keymap-service-type, console-font-shepherd-services)
(mingetty-shepherd-service, nscd-shepherd-service)
(hydra-key-authorization, guix-shepherd-service)
(guix-publish-shepherd-service, udev-shepherd-service)
(gpm-shepherd-service, <kmscon-configuration>)
(kmscon-service-type): Likewise.
* gnu/services/shepherd.scm (shepherd-boot-gexp): Likewise.
 2016-12-19 17:51:00 +01:00
Leo Famulari
43686dcb2f
gnu: openssh: Update to 7.4p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.4p1.
[source]: Remove 'openssh-memory-exhaustion.patch'.
* gnu/packages/patches/openssh-memory-exhaustion.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-12-19 10:54:11 -05:00
Leo Famulari
307349f6f7
gnu: samba: Update to 4.5.3 [fixes CVE-2016-{2123,2125,2126}]. 
* gnu/packages/samba.scm (samba): Update to 4.5.3.
 2016-12-19 09:50:02 -05:00
Marius Bakke
94a84d8367
gnu: pcsc-lite: Update to 1.8.19. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.19.
 2016-12-19 14:27:33 +01:00
Manolis Ragkousis
be6a70edc2
gnu: hurd-headers: Update to 0.9. 
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.9.
 2016-12-19 12:04:48 +02:00
Manolis Ragkousis
9c9402be2e
gnu: mig: Update to 1.8. 
* gnu/packages/hurd.scm (mig): Update to version 1.8.
 2016-12-19 12:04:43 +02:00
Manolis Ragkousis
d950f03848
gnu: gnumach-headers: Update to 1.8. 
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.8.
 2016-12-19 12:04:21 +02:00
Kei Kebreau
5f80054053
gnu: gnuplot: Update to 5.0.5. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
 2016-12-18 23:27:43 -05:00
Kei Kebreau
5a2604bfb6
gnu: wxmaxima: Update to 16.12.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
 2016-12-18 14:05:40 -05:00
Kei Kebreau
55b2756906
gnu: tor: split description into two parts for easier reading. 
* gnu/packages/tor.scm (tor)[description]: Split it.
 2016-12-18 13:00:11 -05:00
Kei Kebreau
4a652c78d4
gnu: maxima: Update to 5.39.0. 
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
 2016-12-18 12:57:09 -05:00
Marius Bakke
0599416520
gnu: mumble: Update to 1.2.18. 
* gnu/packages/telephony.scm (mumble): Update to 1.2.18.
 2016-12-18 16:53:21 +01:00
Hartmut Goebel
00e0ca7ccb
gnu: python-docutils: Update to 0.13.1 
* gnu/packages/python.scm(python-docutils): Update to 0.13.1.
[source]: Use pypi-uri.
 2016-12-18 16:31:35 +01:00
Marius Bakke
866872aa71
linux-initrd: Support FAT filesystems. 
* gnu/system/linux-initrd.scm (base-initrd): When a FAT filesystem is
present: Add fatfsck/static in 'helper-packages'; and add nls_iso8859-1
in 'linux-modules'.
 2016-12-18 13:18:47 +01:00
Ludovic Courtès
8a4c988892
build: check-final-inputs-self-contained has an exception for 'bash:include'. 
Currently 'bash:include' of the final Bash depends on bootstrap stuff.

* build-aux/check-final-inputs-self-contained.scm (final-inputs): Add
clause for 'bash:include'.
* gnu/packages/commencement.scm (bash-final): Add FIXME comment.
 2016-12-18 12:37:26 +01:00
Ricardo Wurmus
5073ecf055
gnu: yoshimi: Update to 1.5.0. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.0.
 2016-12-18 12:00:33 +01:00
Nicolas Goaziou
36a318adc7
gnu: emacs-org: Update to 20161214. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161214.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2016-12-18 17:05:45 +08:00
Leo Famulari
51d8395ac6
gnu: youtube-dl: Update to 2016.12.15. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.12.15.
 2016-12-17 20:27:21 -05:00
Raoul Bonnal
a1814e4a27
gnu: r: Update to 3.3.2. 
* gnu/packages/statistics.scm (r): Update to 3.3.2.
 2016-12-18 10:02:52 +10:00
Ben Woodcroft
3fffabce2a
gnu: Add attribution line for Raoul Bonnal. 
This is a follow-up commit to c9e9154e99.

* gnu/packages/bioinformatics.scm: Add attribution.
 2016-12-18 10:01:04 +10:00
Ludovic Courtès
a32d0c8304
gnu: sane-backends: Remove timestamps from the output. 
* gnu/packages/scanner.scm (sane-backends-minimal)[source](modules, snippet):
New fields.
 2016-12-17 23:13:05 +01:00
Andy Patterson
4c92874328
gnu: Add and use sane-backends. 
* gnu/packages/scanner.scm (sane-backends): New variable.
* gnu/packages/gnome.scm (colord, simple-scan): Use it instead of
'sane-backends-minimal'.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-17 23:13:05 +01:00
Andy Patterson
32aa37a2e7
gnu: Add and use sane-backends-minimal. 
* gnu/packages/scanner.scm (sane-backends): Rename to...
(sane-backends-minimal): this. Adjust name, source, synopsis and
description accordingly.
* gnu/packages/cups.scm (hplip): Use 'sane-backends-minimal' instead of
'sane-backends'.
* gnu/packages/gnome.scm (colord, simple-scan): Likewise.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-17 23:13:04 +01:00
Andy Patterson
33a14e29f9
gnu: sane-backends: Disable backend generation. 
* gnu/packages/scanner.scm (sane-backends)[arguments]: Add a phase to
disable the compilation of backends.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-17 23:13:04 +01:00
Leo Famulari
9b1d77f6d4
gnu: pinentry: Update to 1.0.0. 
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.0.0.
 2016-12-17 13:40:42 -05:00
Leo Famulari
402efb61d3
gnu: npth: Update to 1.3. 
* gnu/packages/gnupg.scm (npth): Update to 1.3.
 2016-12-17 13:40:42 -05:00
Ludovic Courtès
d44fb7dd60
gnu: bootstrap: Add FTP URL for bootstrap binaries. 
* gnu/packages/bootstrap.scm (%bootstrap-base-urls): Add
ftp://alpha.gnu.org (http://alpha.gnu.org is currently unresponsive.)
 2016-12-17 14:46:42 +01:00
Raoul Bonnal
c9e9154e99
gnu: star: Update to 2.5.2b. 
* gnu/packages/bioinformatics (star): Update to 2.5.2b.
[source]: Delete precompiled binary.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2016-12-17 23:26:35 +10:00
Marius Bakke
51ad11ad62
gnu: Add fatfsck-static. 
* gnu/packages/disk.scm (dosfstools/static): New private variable.
(fatfsck/static): New variable.
 2016-12-17 10:13:22 +01:00
Alex Kost
64e43c674e
gnu: Add emacs-guix. 
* gnu/packages/emacs.scm (emacs-guix): New variable.
 2016-12-17 10:56:39 +03:00
Alex Kost
753baf775f
gnu: Add emacs-bui. 
* gnu/packages/emacs.scm (emacs-bui): New variable.
 2016-12-17 10:56:39 +03:00
Leo Famulari
e02f1473da
gnu: libgcrypt: Update to 1.7.5. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.7.5.
 2016-12-17 00:56:48 -05:00
Leo Famulari
c7ec7c9926
gnu: imagemagick: Update to 6.9.6-8. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-8.
 2016-12-17 00:46:48 -05:00
Leo Famulari
7c1a7bf484
gnu: acme-client: Provide path to certificates. 
* gnu/packages/tls.scm (acme-client)[arguments]: Add 'patch-paths' phase.
 2016-12-17 00:09:10 -05:00
Leo Famulari
f8faf537ca
gnu: libupnp: Fix CVE-2016-8863. 
* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/libupnp.scm (libupnp)[source]: Use it.
 2016-12-16 15:28:02 -05:00
Theodoros Foradis
850812decf
gnu: Add Greek Aspell dictionary 
* gnu/packages/aspell.scm (aspell-dict-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-16 18:04:55 +01:00
Ludovic Courtès
f731529e2a
install: Add dosfstools. 
* gnu/system/install.scm (installation-os)[packages]: Add DOSFSTOOLS.
 2016-12-16 17:37:28 +01:00
ng0
fc9286d03a
gnu: tor: Recommend torsocks. 
* gnu/packages/tor.scm (tor)[description]: Recommend torsocks.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-12-16 10:49:01 -05:00
Ludovic Courtès
3eee16130d
gnu: grub: Add dependency on efibootmgr. 
Suggested by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/grub.scm (grub)[arguments]: In 'patch-stuff', set
efibootmgr absolute file name in 'platform.c'.
[inputs]: Add EFIBOOTMGR.
 2016-12-16 14:45:56 +01:00
Tobias Geerinckx-Rice
c8502d9ec1
Revert "gnu: kmod: Update to 23." 
This should have been pushed to the ‘staging’ branch first.

This reverts commit 1e1cd41629.
 2016-12-16 12:19:50 +01:00
Tobias Geerinckx-Rice
68ea090b93
gnu: libcap: Update to 2.25. 
* gnu/packages/linux.scm (libcap): Update to 2.25.
 2016-12-16 03:09:13 +01:00
Tobias Geerinckx-Rice
7c58c852c4
gnu: libraw1394: Update to 2.1.2. 
* gnu/packages/linux.scm (libraw1394): Update to 2.1.2.
 2016-12-16 03:08:43 +01:00
Tobias Geerinckx-Rice
1e1cd41629
gnu: kmod: Update to 23. 
* gnu/packages/linux.scm (kmod): Update to 23.
 2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice
3fe7cb872a
gnu: ethtool: Update to 4.8. 
* gnu/packages/networking.scm (ethtool): Update to 4.8.
 2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice
7d162df8ce
gnu: mcelog: Update to 146. 
* gnu/packages/linux.scm (mcelog): Update to 146.
 2016-12-16 03:08:41 +01:00
Mark H Weaver
0eb36dd17f
gnu: linux-libre@4.4: Update to 4.4.39. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.39.
 2016-12-15 20:35:24 -05:00
Leo Famulari
fb73f07a0f
gnu: guile-irregex: Update to 0.9.6 [fixes CVE-2016-9954]. 
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.6.
 2016-12-15 18:40:19 -05:00
Mathieu Lirzin
57aa94bd7e
services: cuirass: Put specifications in the store. 
* gnu/services/cuirass.scm (<cuirass-configuration>): Change type of
'specifications' field to an alist to match the documentation example.
(cuirass-shepherd-service): Store the provided specifications in a file.  Use
that file as the "--specification" argument.
 2016-12-15 22:50:27 +01:00
Mathieu Lirzin
44ccd9622e
gnu: cuirass: Update to revision 2. 
* gnu/packages/ci.scm (cuirass): Update to revision 2.
[native-inputs]: Add texinfo.
 2016-12-15 22:50:24 +01:00
Tobias Geerinckx-Rice
177de53784
gnu: libpsl: Update to 0.16.0. 
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
 2016-12-15 21:05:05 +01:00