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Author SHA1 Message Date
Tobias Geerinckx-Rice
5a9c2abf9e
gnu: Remove ‘open source’ from package descriptions. 
Also do some (trivial) editing where appropriate.

* gnu/packages/bioconductor.scm (r-anaquin, r-rcppnumerical)
[description]: Remove superfluous ‘open source’.
* gnu/packages/debian.scm (apt-mirror)[description]: Likewise.
Add @acronym{}.  Drop obscure Ubuntu for famous Trisquel.  Reorder.
* gnu/packages/documentation.scm (scrollkeeper)[description]:
Remove superfluous ‘open systems’.  Keep ‘Open Source’ in standard name.
* gnu/packages/engineering.scm (freecad, cura-engine)[description]:
Remove superfluous ‘open source’ and excessive puffery.
* gnu/packages/firmware.scm (make-opensbi-package)
[synopsis]: Remove ‘Open Source’.  Use @acronym{}.
[description]: Fix first sentence to follow guidelines.  Use @acronym{}.
* gnu/packages/game-development.scm (ioquake3, recastnavigation):
[description]: Remove ‘open source’.
* gnu/packages/graphics.scm (skia)[description]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-s-sysdeps)[description]: Likewise.
* gnu/packages/machine-learning.scm (onnx)[description]: Likewise.
Use @acronym{}.
* gnu/packages/ocaml.scm (ocaml-cudf)[description]: Likewise.
 2022-08-14 02:00:00 +02:00
Ricardo Wurmus
9b1a2dcd5b
gnu: python-umap-learn: Disable unreliable test. 
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable
test_densmap_trustworthiness_on_iris_supervised.
 2022-08-01 12:46:19 +02:00
Ricardo Wurmus
a69f2cd076
gnu: python-umap-learn: Set NUMBA_CACHE_DIR. 
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase
to set NUMBA_CACHE_DIR.
 2022-08-01 12:46:19 +02:00
Ricardo Wurmus
6416e77280
gnu: Add python-pyro-ppl. 
* gnu/packages/machine-learning.scm (python-pyro-ppl): New variable.
 2022-07-09 10:21:21 +02:00
Ricardo Wurmus
ff37afb288
gnu: Add python-visdom. 
* gnu/packages/machine-learning.scm (python-visdom): New variable.
 2022-07-09 10:21:21 +02:00
Ricardo Wurmus
2cf138db76
gnu: Add python-lap. 
* gnu/packages/machine-learning.scm (python-lap): New variable.
 2022-07-09 10:21:21 +02:00
Ricardo Wurmus
bafa7a00a1
gnu: Add python-pyro-api. 
* gnu/packages/machine-learning.scm (python-pyro-api): New variable.
 2022-07-08 18:41:35 +02:00
Ricardo Wurmus
c6136b48c2
gnu: Add python-torchfile. 
* gnu/packages/machine-learning.scm (python-torchfile): New variable.
 2022-07-08 18:41:35 +02:00
Ricardo Wurmus
ba86c7604d
gnu: python-torchvision: Update to 0.13.0. 
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.13.0.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
deae5d0df1
gnu: python-pytorch: Update to 1.12.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.12.0.
[arguments]: Explicitly request the use of our pybind11 package.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
87b43ab562
gnu: xnnpack: Update to 0.0-2.ae108ef. 
* gnu/packages/machine-learning.scm (xnnpack): Update to 0.0-2.ae108ef.
* gnu/packages/patches/xnnpack-system-libraries.patch: Update.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
c929619b36
gnu: python-pytorch-for-r-torch: Explicitly keep at 1.11.0. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Separate
from python-pytorch by overriding version and source.
 2022-07-07 14:02:33 +02:00
Ricardo Wurmus
563bb6eab1
gnu: Add python-torchvision. 
* gnu/packages/machine-learning.scm (python-torchvision): New variable.
 2022-07-06 17:16:15 +02:00
Ludovic Courtès
43cf8861b8
gnu: liblantern: Update to 0.8.0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.0.
 2022-07-05 16:56:05 +02:00
Ludovic Courtès
20f55375dc
gnu: python-pytorch: Update to 1.11.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.11.0.
[source](snippet): Remove now unnecessary "caffe2/onnx/backend.cc"
substitution.
[arguments]: Add 'remove-caffe2-onnx-scripts' phase.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: Update.
 2022-07-05 16:56:04 +02:00
Ludovic Courtès
b211824f0a
gnu: onnx: Update to 1.12.0. 
* gnu/packages/machine-learning.scm (onnx): Update to 1.12.0.
 2022-07-05 16:56:04 +02:00
Efraim Flashner
64c043e63a
Merge remote-tracking branch 'origin/master' into staging 2022-06-01 12:42:04 +03:00
Maxim Cournoyer
9a550ba8c9
gnu: Remove python2-autograd. 
* gnu/packages/machine-learning.scm (python2-autograd): Delete variable.
 2022-05-31 14:52:31 -04:00
Maxim Cournoyer
0837d0aaf1
gnu: Remove python2-fastlmm. 
* gnu/packages/machine-learning.scm (python2-fastlmm): Delete variable.
 2022-05-31 14:52:25 -04:00
Maxim Cournoyer
1c865e8e1c
gnu: Remove python2-scikit-learn. 
* gnu/packages/machine-learning.scm (python2-scikit-learn): Delete variable.
(python-scikit-learn)[properties]: Remove the python2-variant property.
 2022-05-31 14:52:24 -04:00
Efraim Flashner
e5e0e283ff
Merge branch 'master' into staging 2022-05-16 11:14:42 +03:00
Aurora
7c204281ff
gnu: openfst: Update to 1.8.2, enable ngram extension 
This extension is required by some programs that depend on openfst that aren't
yet packaged.

* gnu/packages/machine-learning.scm (openfst): Update to 1.8.2.
[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-15 22:49:50 +02:00
Aurora
d60b9f8d0f
gnu: openfst-1.7.3: Enable ngram-fst extension & C++14 build 
The extension doesn't build in old versions of openfst such as 1.7.3 without
manually setting CXXFLAGS.

This package definition, including this workaround to build extensions
successfully, will need to be removed once kaldi is fixed upstream and can be
used with up-to-date versions of openfst.

* gnu/packages/machine-learning.scm (openfst-1.7.3)[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-15 22:49:50 +02:00
Aurora
d57a2c2b33
gnu: kaldi: Update to dd107fd, bypass tests 
Either kaldi's tests are broken or openblas has reintroduced a bug:
- https://github.com/kaldi-asr/kaldi/pull/4421

More testing & fixes required upstream to re-enable the tests later. For now
they'll just have to be ignored.

* gnu/packages/machine-learning.scm (kaldi): Update to dd107fd.
[arguments]: In 'configure' phase, modify "matrix/Makefile".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-15 22:49:50 +02:00
Aurora
8c7e4a9698
gnu: openfst: Add 1.7.3 for kaldi 
Kaldi is currently broken with openfst versions newer than 1.7.3 as it changed
some of its function signatures.

Once Kaldi is patched/fixed, this should be removed.

Reference Issues:
- https://github.com/kaldi-asr/kaldi/issues/4131
- https://github.com/kaldi-asr/kaldi/issues/4393

* gnu/packages/machine-learning.scm (openfst-1.7.3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-15 22:49:50 +02:00
Maxim Cournoyer
34106c85d8
gnu: python-umap-learn: Update to 0.5.3. 
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3.
[source]: Use git.
[arguments]: New field.
[native-inputs]: Delete python-joblib and python-nose.  Add python-pytest.
[propagated-inputs]: Add python-pynndescent and python-tqdm.
[synopsis]: Fix indentation.
[description]: Fix typo and re-indent.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer
06b0512260
gnu: python-pynndescent: Update to 0.5.6. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6.
[phases]{check}: Skip the test_weighted_minkowski test.
[native-inputs, propagated-inputs]: Re-indent.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer
1d1f44b709
gnu: python-scikit-learn: Parallelize build and test suite. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[phases]{configure}: New phase.
{build-ext}: Add '-j' option.
{check}: Add '-n' option.
[native-inputs]: Add python-pytest-xdist.
 2022-05-12 12:45:55 -04:00
Efraim Flashner
53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file. 
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
 2022-04-15 02:11:03 +03:00
Ricardo Wurmus
e378e7a855
gnu: liblantern: Update to 0.7.2. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.2.
 2022-03-15 22:14:39 +01:00
Ricardo Wurmus
95f9c44362
gnu: liblantern: Update to 0.7.0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
d7636c8bb7
gnu: python-pytorch-for-r-torch: Reuse python-pytorch. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use
definition on python-pytorch, thereby updating to 1.10.2.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
7146e553b9
gnu: Add liblantern. 
* gnu/packages/machine-learning.scm (liblantern): New variable.
 2022-02-11 15:44:42 +01:00
Ricardo Wurmus
7b676317b3
gnu: Add python-pytorch-for-r-torch. 
* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): New variable.
 2022-02-11 15:44:42 +01:00
Ricardo Wurmus
8b787eb929
gnu: python-pytorch: Update to 1.10.2. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.2.
 2022-02-11 15:44:42 +01:00
Vinicius Monego
c30fa177f3
gnu: xgboost: Update to 1.5.2. 
* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to
1.5.2.
(python-xgboost)[arguments]: Enable previously failing test.
* gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-01-24 12:15:29 +01:00
Marius Bakke
af36848fb3
gnu: python-scikit-learn: Update to 1.0.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.2.
 2022-01-19 21:41:13 +01:00
Maxim Cournoyer
276f40fdc3
Merge branch 'version-1.4.0' 
With resolved conflicts in:
	gnu/packages/gnome.scm
	gnu/packages/openstack.scm
	gnu/packages/python-xyz.scm
 2022-01-17 11:47:09 -05:00
Sarah Morgensen
18e872b805
gnu: python-scikit-learn: Remove obsolete phase. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]
<#:phases>: Remove 'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Vinicius Monego
2522ea38a3
gnu: python-opentsne: Update to 0.6.1. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1.
[source]<file-name>: Use git-file-name.
[arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to
skip a failing test.
 2022-01-14 21:29:59 +01:00
Vinicius Monego
0848b5595c
gnu: python-pynndescent: Update to 0.5.5. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5.
[arguments]<#:phases>: Override 'check phase.
[native-inputs]: Remove python-nose. Add python-pytest.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-14 21:29:58 +01:00
Marius Bakke
c7ef428a18
gnu: python-scikit-rebate: Update to 0.62. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62.
[arguments]: Disable tests.
[native-inputs]: Remove.
 2022-01-11 18:36:39 +01:00
Ricardo Wurmus
06b51c68de
gnu: Add guile-aiscm-next. 
* gnu/packages/machine-learning.scm (guile-aiscm-next): New variable.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
f44305bc13
gnu: guile-aiscm: Remove opencv and tensorflow. 
* gnu/packages/machine-learning.scm (guile-aiscm)[inputs]: Remove opencv and
tensorflow.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
50bd2b331c
gnu: guile-aiscm: Remove timestamp from documentation. 
* gnu/packages/machine-learning.scm (guile-aiscm)[arguments]: Add phase
'build-reproducibly.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
9e644d979d
gnu: tensorflow: Install C headers. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase
'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from
'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package
after 'install phase.
[source]: Add patch.
* gnu/packages/patches/tensorflow-c-api-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
f9d3f74ad2
gnu: Add guile-aiscm. 
* gnu/packages/machine-learning.scm (guile-aiscm): New variable.
 2021-12-27 13:21:05 +01:00
Ricardo Wurmus
e1c91aae23
gnu: tensorflow: Fix build with newer numpy. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Rename
'python3.7-compatibility to 'python3.9-compatibility and patch file to allow
building with newer numpy.
 2021-12-15 08:31:50 +01:00
Ricardo Wurmus
76ab15a7c9
gnu: tensorflow: Do not unpack directory. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Copy Eigen source
code instead of trying to unpack it.
 2021-12-14 15:34:44 +01:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00