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Author SHA1 Message Date
Ricardo Wurmus
b140569e18
gnu: r-readxl: Update to 1.2.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
0aad198e2b
gnu: r-pracma: Update to 2.2.2. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
0e87bf0177
gnu: r-processx: Update to 3.2.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
2766d3436a
gnu: r-sjlabelled: Update to 1.0.16. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
813d9c51e3
gnu: r-broom: Update to 0.5.1. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
25c67ecfc6
gnu: Add r-generics. 
* gnu/packages/cran.scm (r-generics): New variable.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
646e1ef059
gnu: r-curl: Update to 3.3. 
* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
ef91530362
gnu: r-readr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
48102ce123
gnu: r-mvabund: Update to 4.0.1. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
04a18a81ae
gnu: r-writexl: Update to 1.1. 
* gnu/packages/cran.scm (r-writexl): Update to 1.1.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus
a2315c6702
gnu: r-jsonlite: Update to 1.6. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
 2019-01-12 23:35:11 +01:00
Kei Kebreau
ea600ff709
gnu: python-pillow: Update homepage. 
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
 2019-01-12 16:39:26 -05:00
Kei Kebreau
acbf312573
gnu: python-pillow: Update to 5.4.0 
* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
 2019-01-12 16:38:36 -05:00
Ricardo Wurmus
146c6b62bf
gnu: Sort package modules in (gnu packages guile). 
* gnu/packages/guile.scm: Sort list of gnu/packages modules.
 2019-01-12 12:14:31 +01:00
Ricardo Wurmus
7d8baff97b
gnu: impressive: Update to 0.12.0. 
* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
 2019-01-12 12:14:31 +01:00
Ricardo Wurmus
24155bf40d
gnu: Move Java compression packages to new module. 
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
 2019-01-12 12:14:28 +01:00
guy fleury iteriteka
1704367719
gnu: Add Bochs. 
* gnu/packages/virtualization.scm (bochs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-01-11 17:09:20 -05:00
Leo Famulari
81c64748ba
gnu: Stellarium: Update to 0.18.3. 
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
 2019-01-11 17:07:55 -05:00
Pierre Neidhardt
1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found. 
* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
 2019-01-11 19:48:00 +01:00
Pierre Neidhardt
e0fa641380
gnu: opendht: Use jsoncpp and restbed. 
* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
 2019-01-11 19:48:00 +01:00
Pierre Neidhardt
362fba83dd
gnu: Add restbed. 
* gnu/packages/networking.scm (restbed): New variable.
 2019-01-11 19:48:00 +01:00
Pierre Neidhardt
50e1843b3a
gnu: libupnp: Update to 1.6.25. 
* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
 2019-01-11 19:48:00 +01:00
Hartmut Goebel
46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs. 
Using LIBRARY_PATH was introduced in
16b8aff85b, but is wrong since
this variable is used by the compiler (gcc) at link time.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: Change
  LIBRARY_PATH to KDEINIT5_LIBRARY_PATH.
* gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]:
  New field.
 2019-01-11 16:35:52 +01:00
Jelle Licht
5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0." 
This change should be applied once we update our magit package.

This reverts commit b96f0e6ff9.
 2019-01-11 13:32:31 +01:00
Gabriel Hondet
88d7101798
gnu: Add emacs-general. 
[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-11 12:14:38 +01:00
Ludovic Courtès
84a2de36a1
services: Deprecate a few more service procedures. 
These procedures were already either undocumented (and de facto
deprecated) or documented as deprecated or redundant.

* gnu/services/base.scm (guix-service, guix-publish-service): Mark as
deprecated.
* gnu/services/mcron.scm (mcron-service): Likewise.
* gnu/services/networking.scm (tor-service): Likewise.
* doc/guix.texi (Scheduled Job Execution): Remove 'mcron-service' and
adjust example.
(Networking Services): Remove 'tor-service'.
* gnu/tests/base.scm (%mcron-os): Use 'mcron-service-type' instead of
'mcron-service'.
* gnu/tests/networking.scm (%tor-os): Use 'tor-service-type' instead of
'tor-service'.
* tests/guix-system.sh: Likewise.
 2019-01-11 12:14:38 +01:00
Ludovic Courtès
babfd9447d
tests: Nitpick on Docker test. 
This is a followup to 7d8a4eeacc.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/docker.scm.
* gnu/tests/docker.scm: Update copyright line.
 2019-01-11 12:14:37 +01:00
Rutger Helling
cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
 2019-01-11 11:15:13 +01:00
Ricardo Wurmus
e7c6bc45ed
gnu: jamm: Remove broken "build" phase. 
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
 2019-01-11 06:08:43 +01:00
Danny Milosavljevic
9757b57f4e
services: docker: Update comment. 
* gnu/services/docker.scm (docker-shepherd-service): Update comment.
 2019-01-11 02:53:28 +01:00
Leo Famulari
adf0b482eb
gnu: gexiv2: Update to 0.10.10. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
 2019-01-10 18:45:41 -05:00
Ricardo Wurmus
d4d9a1ece0
gnu: Update texlive packages. 
* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
 2019-01-10 22:43:09 +01:00
Kei Kebreau
c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882]. 
* gnu/packages/irc.scm (irssi): Update to 1.1.2.
 2019-01-10 16:05:42 -05:00
Danny Milosavljevic
ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls. 
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
 2019-01-10 21:29:53 +01:00
Pierre Neidhardt
6a6e5d84da
gnu: opendht: Update to 1.8.1. 
* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
 2019-01-10 21:09:06 +01:00
Pierre Neidhardt
6fe6840dab
gnu: Add libsecp256k1. 
* gnu/packages/crypto.scm (libsecp256k1): New variable.
 2019-01-10 21:09:06 +01:00
Pierre Neidhardt
35ac66eec1
gnu: crypto++: Update to 8.0.0. 
* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
 2019-01-10 21:09:06 +01:00
Danny Milosavljevic
8b0c174415
services: docker: Use more minimal service requrements. 
* gnu/services/docker.scm (docker-service-type)[requirement]: Add
file-system-/sys/fs/cgroup/blkio, file-system-/sys/fs/cgroup/cpu,
file-system-/sys/fs/cgroup/cpuset, file-system-/sys/fs/cgroup/devices,
file-system-/sys/fs/cgroup/memory.  Remove elogind.
 2019-01-10 19:17:49 +01:00
Danny Milosavljevic
d3a0e74d6a
services: docker: Clarify service-extension shepherd-root-service-type. 
* gnu/services/docker.scm (docker-service-type)[extensions]: Clarify
service-extension shepherd-root-service-type.
 2019-01-10 19:17:48 +01:00
Nam Nguyen
dbd346ae88
gnu: sct: Correct license. 
* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-10 14:59:23 +01:00
Ludovic Courtès
65a67bf711
services: Use 'define-deprecated' for service procedures. 
* gnu/services/base.scm (urandom-seed-service, gpm-service): Define
using 'define-deprecated'.
* gnu/services/messaging.scm (bitlbee-service): Likewise.
* gnu/services/networking.scm (dhcp-client-service): Likewise.
(ntp-service): Likewise.
* gnu/services/xorg.scm (slim-service): Likewise.
(gdm-service): Likewise.
 2019-01-10 14:59:23 +01:00
Tim Gesthuizen
7d4b3e1e2b
gnu: Add pwsafe 
* gnu/packages/password-utils.scm (pwsafe): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-10 14:59:22 +01:00
Ludovic Courtès
01b3625df6
services: gdm: Add default value. 
* gnu/services/xorg.scm (<gdm-configuration>)[x-server]: Add default
value.
(gdm-service-type)[default-value, description]: New fields.
(gdm-service): Mark as deprecated.
 2019-01-10 14:59:22 +01:00
Rutger Helling
394207c1ee
gnu: Add missing copyright line. 
* gnu/packages/video.scm: Add missing copyright line for commit 20b4aa6.
 2019-01-10 08:59:44 +01:00
Rutger Helling
1d591432c7
gnu: wlstream: Fix indentation. 
* gnu/packages/video.scm (wlstream): Fix indentation.
 2019-01-10 08:53:36 +01:00
Rutger Helling
20b4aa6bab
gnu: Add wlstream. 
* gnu/packages/video.scm (wlstream): New variable.
 2019-01-10 08:41:03 +01:00
Rutger Helling
1f61cc102e
gnu: ffmpeg: Add libdrm support. 
* gnu/packages/video.scm (ffmpeg): Add libdrm support.
 2019-01-10 08:20:39 +01:00
Danny Milosavljevic
6b6a25d4d2
gnu: docker: Fix more paths. 
* gnu/packages/docker.scm (docker)[inputs]: Add dbus, git.
[arguments]<#:phases>[patch-paths]: Use them.
 2019-01-10 05:40:53 +01:00
Danny Milosavljevic
f946a370ed
services: docker: Depend on elogind. 
* gnu/services/docker.scm (docker-shepherd-service)[requirement]: Add elogind.
 2019-01-10 05:15:42 +01:00
Danny Milosavljevic
dc4b4a38fa
tests: docker: Fix test. 
* gnu/tests/docker.scm (run-docker-test): Set memory and disk size.
(%docker-os): Add elogind service.
 2019-01-10 05:15:41 +01:00
Mark H Weaver
60893e5c84
gnu: linux-libre: Update to 4.20.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.1.
(%linux-libre-hash): Update hash.
 2019-01-09 23:00:07 -05:00
Mark H Weaver
f7ed0b1db5
gnu: linux-libre@4.19: Update to 4.19.14. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.14.
(%linux-libre-4.19-hash): Update hash.
 2019-01-09 23:00:05 -05:00
Mark H Weaver
166c6ad39c
gnu: linux-libre@4.14: Update to 4.14.92. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.92.
(%linux-libre-4.14-hash): Update hash.
 2019-01-09 23:00:03 -05:00
Mark H Weaver
c37f52e3be
gnu: linux-libre@4.9: Update to 4.9.149. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.149.
 2019-01-09 23:00:00 -05:00
Mark H Weaver
28f6b27543
gnu: linux-libre: Enable pressure stall information. 
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Enable CONFIG_PSI.
 2019-01-09 22:59:58 -05:00
Danny Milosavljevic
8cd958608c
gnu: docker: Disable tests requiring elevated permissions. 
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[delete-failing-tests]:
Disable tests requiring elevated permissions.
 2019-01-10 04:46:29 +01:00
Danny Milosavljevic
8b487bf84f
gnu: containerd: Fix more paths. 
* gnu/packages/docker.scm (containerd)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
 2019-01-10 04:34:57 +01:00
Danny Milosavljevic
58adcaa19f
gnu: docker: Fix more paths. 
* gnu/packages/docker.scm (docker)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
 2019-01-10 04:33:47 +01:00
Danny Milosavljevic
f0bfd0fc21
services: docker: Specify log file for containerd. 
* gnu/services/docker.scm (containerd-shepherd-service): Specify log file
for containerd.
 2019-01-10 03:54:28 +01:00
Danny Milosavljevic
7d8a4eeacc
tests: Add Docker system test. 
* gnu/tests/docker.scm: New file.
 2019-01-10 03:44:20 +01:00
Danny Milosavljevic
65a7e35cb5
gnu: docker: Substitute LookPath of literals generally. 
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Substitute LookPath of literals generally.
 2019-01-10 03:12:32 +01:00
Danny Milosavljevic
e9b316453e
gnu: Add docker-cli. 
* gnu/packages/docker.scm (docker-cli): New variable.
 2019-01-10 03:01:12 +01:00
Danny Milosavljevic
8af4c335e3
services: Add docker. 
* gnu/services/docker.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Miscellaneous Services): Document the service.
 2019-01-10 03:00:55 +01:00
Danny Milosavljevic
f87ea24a82
gnu: Add docker. 
* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-10 02:49:14 +01:00
Leo Famulari
fc51c28ae8
gnu: Blender: Update to a beta release of 2.80. 
Fixes <https://bugs.gnu.org/33608> and <https://bugs.gnu.org/33882>.

* gnu/packages/graphics.scm (blender): Update to 2.80-beta-0.3c3d80e.
[source]: Fetch from the Git repository.
[inputs]: Use OpenJPEG 2. Add Numpy.
[arguments]: Specify the location of Numpy. Remove some configure flags that are
no longer used. Comment out the 'fix-broken-import' phase because the
file it patches doesn't exist in the Git sources.
[description]: Add a warning about the beta status.
 2019-01-09 18:54:16 -05:00
Jelle Licht
b96f0e6ff9
gnu: emacs-ghub: Update to 3.2.0. 
* gnu/packages/emacs.scm (emacs-ghub): Update to 3.2.0.
[source]: Use 'git-fetch'.
[propagated-inputs]: Add emacs-dash, emacs-graphql,
emacs-let-alist, emacs-treepy.
 2019-01-09 22:40:32 +01:00
Jelle Licht
9bc7dd62b4
gnu: emacs-magit-popup: Update to 2.12.5. 
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.5.
 2019-01-09 22:40:25 +01:00
Jelle Licht
8d59ef68cb
gnu: emacs-with-editor: Update to 2.8.0. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.8.0.
[source]: Use 'git-fetch'.
 2019-01-09 22:40:13 +01:00
Jelle Licht
5b07f06804
gnu: Add emacs-graphql. 
* gnu/packages/emacs.scm (emacs-graphql): New variable.
 2019-01-09 22:40:02 +01:00
Jelle Licht
abb8dff054
gnu: Add emacs-treepy. 
* gnu/packages/emacs.scm (emacs-treepy): New variable.
 2019-01-09 22:38:22 +01:00
Jelle Licht
56c50c71b5
gnu: emacs-emacsql: Update to 3.0.0. 
* gnu/packages/emacs.scm (emacs-emacsql): Update to 3.0.0.
[source]: Use 'git-fetch'.
[arguments]: Remove unnecessary fix.
 2019-01-09 22:38:06 +01:00
Jelle Licht
d4e915f9b5
gnu: emacs-closql: Update to 1.0.0. 
* gnu/packages/emacs.scm (emacs-closql): Update to 1.0.0.
[source]: Use 'git-fetch'.
 2019-01-09 22:37:52 +01:00
Leo Famulari
817e09c174
gnu: Django: Update to 1.11.18 [fixes CVE-2019-3498]. 
* gnu/packages/django.scm (python-django, python2-django): Update to 1.11.18.
 2019-01-09 15:44:36 -05:00
Leo Famulari
e82c98abe9
gnu: aria2: Fix CVE-2019-3500. 
* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (aria2)[source]: Use it.
 2019-01-09 15:38:19 -05:00
Leo Famulari
45ee3fde87
gnu: hashcat: Update to 5.1.0. 
* gnu/packages/password-utils.scm (hashcat): Update to 5.1.0.
 2019-01-09 14:05:20 -05:00
Danny Milosavljevic
f73b7bf6e2
gnu: fasm: Update comments. 
* gnu/packages/assembly.scm (fasm): Update comments.
 2019-01-09 19:33:28 +01:00
Danny Milosavljevic
cb95e79f14
gnu: fasm: Fix grammatical errors in description. 
* gnu/packages/assembly.scm (fasm)[description]: Modify.
 2019-01-09 19:33:27 +01:00
Danny Milosavljevic
1bde3d2cbf
gnu: Add dev86. 
* gnu/packages/assembly.scm (dev86): New variable.
 2019-01-09 19:33:27 +01:00
Efraim Flashner
ab7aa06cac
gnu: python-pygit2: Update to 0.27.3. 
* gnu/packages/python.scm (python-pygit2): Update to 0.27.3.
[arguments]: Add custom phase to compile with cffi support. Add custom
phase to not require specific versions of python-cffi.
[native-inputs]: Add python-pytest.
 2019-01-09 20:25:50 +02:00
Ludovic Courtès
1b504b498a
gnu: libgit2: Update to 0.27.7. 
* gnu/packages/version-control.scm (libgit2): Update to 0.27.7.
 2019-01-09 18:47:57 +01:00
Tim Gesthuizen
037c3b0ea2
gnu: emacs-irony-mode: Remove propagated input 
emacs-irony-mode finds its server binary because its a propagated input and is
in the path. We can substitute the variable `irony-server-install-prefix` to
not propagate the input and keep the binary isolated from the user.

* gnu/packages/emacs.scm (emacs-irony-mode):
[propagated-inputs] Remove propagated inputs
[inputs] Add emacs-irony-mode-server
[arguments] Add phase substituting the variable of the server path

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Tim Gesthuizen
ecf7e4ea43
gnu: emacs-ggtags: Don't require GNU Global in path 
emacs-ggtags relies on the GNU Global tools (global and gtags) to be available
in the path. This way it will grab some random executable if it will find
executables at all.
This is fixed by setting the prefix to GNU Global in the store. This way
emacs-ggtags will use specific deterministic executables.

* gnu/packages/emacs.scm (emacs-ggtags):
[inputs]: Add GNU Global to the inputs
[arguments]: Add a phase for substituting the right path to the executables

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Vasile Dumitrascu
b2a5ef2e94
gnu: e2fsprogs: Update to 1.44.5. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Vasile Dumitrascu
4287bd19c7
gnu: bind: Update to 9.12.3-P1. 
* gnu/packages/dns.scm (bind): Update to 9.12.3-P1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Brett Gilio
25a0ffbf27
gnu: emacs-md4rd: Update to c55512c. 
* gnu/packages/emacs.scm (emacs-md4rd): Update to c55512c.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:56 +01:00
Ricardo Wurmus
cba08f60a1
gnu: Add r-mcmc. 
* gnu/packages/cran.scm (r-mcmc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
39274ab4d9
gnu: Add r-parcor. 
* gnu/packages/cran.scm (r-parcor): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
0af9616d91
gnu: Add r-huge. 
* gnu/packages/cran.scm (r-huge): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
879a15203b
gnu: Add r-ppls. 
* gnu/packages/cran.scm (r-ppls): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
17932a0f63
gnu: Add r-epi. 
* gnu/packages/cran.scm (r-epi): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
728012dae8
gnu: Add r-etm. 
* gnu/packages/cran.scm (r-etm): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
7aeec0cf37
gnu: Add r-cmprsk. 
* gnu/packages/cran.scm (r-cmprsk): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
e3c0e3e360
gnu: Add r-protviz. 
* gnu/packages/cran.scm (r-protviz): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
fe4e9f0349
gnu: Add r-rbamtools. 
* gnu/packages/cran.scm (r-rbamtools): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
e50722c8e6
gnu: Add r-genenet. 
* gnu/packages/cran.scm (r-genenet): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
6a5bfe09eb
gnu: Add r-longitudinal. 
* gnu/packages/cran.scm (r-longitudinal): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
1ea708af8c
gnu: Add r-survivalroc. 
* gnu/packages/cran.scm (r-survivalroc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
afc0d8158b
gnu: Add r-bootstrap. 
* gnu/packages/cran.scm (r-bootstrap): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
4fcbd7eaf3
gnu: Add r-rmeta. 
* gnu/packages/cran.scm (r-rmeta): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
c2d6e866ac
gnu: Add r-drc. 
* gnu/packages/cran.scm (r-drc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
99c164a5c7
gnu: Add r-spatialextremes. 
* gnu/packages/cran.scm (r-spatialextremes): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
32725458b7
gnu: Add r-fields. 
* gnu/packages/cran.scm (r-fields): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus
90104ecd66
gnu: Add r-spam. 
* gnu/packages/cran.scm (r-spam): New variable.
 2019-01-09 17:13:51 +01:00
Ricardo Wurmus
f51dcc275e
gnu: Add r-dotcall64. 
* gnu/packages/cran.scm (r-dotcall64): New variable.
 2019-01-09 17:13:49 +01:00
Ricardo Wurmus
658b2b62cb
gnu: Add r-assertive. 
* gnu/packages/cran.scm (r-assertive): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
39231abf4d
gnu: Add r-assertive-data. 
* gnu/packages/cran.scm (r-assertive-data): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
39ef8e097b
gnu: Add r-assertive-data-uk. 
* gnu/packages/cran.scm (r-assertive-data-uk): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
6d3702e5ce
gnu: Add r-assertive-data-us. 
* gnu/packages/cran.scm (r-assertive-data-us): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
66d0a0a706
gnu: Add r-assertive-strings. 
* gnu/packages/cran.scm (r-assertive-strings): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
29d9a2affb
gnu: Add r-assertive-datetimes. 
* gnu/packages/cran.scm (r-assertive-datetimes): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
50ce8b1e2c
gnu: Add r-assertive-code. 
* gnu/packages/cran.scm (r-assertive-code): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
1f0a761a14
gnu: Add r-assertive-files. 
* gnu/packages/cran.scm (r-assertive-files): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
5e3bd35506
gnu: Add r-assertive-types. 
* gnu/packages/cran.scm (r-assertive-types): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
dcafcfb4fd
gnu: Add r-assertive-reflection. 
* gnu/packages/cran.scm (r-assertive-reflection): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
c358b5d418
gnu: Add r-assertive-models. 
* gnu/packages/cran.scm (r-assertive-models): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus
905aa46ae5
gnu: Add r-assertive-matrices. 
* gnu/packages/cran.scm (r-assertive-matrices): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
2da2d2f605
gnu: Add r-assertive-sets. 
* gnu/packages/cran.scm (r-assertive-sets): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
dac9c1f604
gnu: Add r-assertive-numbers. 
* gnu/packages/cran.scm (r-assertive-numbers): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
4b2d17edaa
gnu: Add r-assertive-properties. 
* gnu/packages/cran.scm (r-assertive-properties): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
8004bb2451
gnu: Add r-assertive-base. 
* gnu/packages/cran.scm (r-assertive-base): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
a536c7c9ad
gnu: Add r-rmpfr. 
* gnu/packages/cran.scm (r-rmpfr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
1ab5160434
gnu: Add r-gmp. 
* gnu/packages/cran.scm (r-gmp): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
dfd09f7bad
gnu: Add r-bigrquery. 
* gnu/packages/cran.scm (r-bigrquery): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
ad6fea1690
gnu: Add r-ontologyindex. 
* gnu/packages/cran.scm (r-ontologyindex): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
9170eb7f1f
gnu: Add r-rapidjsonr. 
* gnu/packages/cran.scm (r-rapidjsonr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
e7176ac5bd
gnu: Add r-pixmap. 
* gnu/packages/cran.scm (r-pixmap): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
895efece37
gnu: Add r-strucchange. 
* gnu/packages/cran.scm (r-strucchange): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
d28be7b76b
gnu: Add r-als. 
* gnu/packages/cran.scm (r-als): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
9401f56b81
gnu: Add r-chemometricswithr. 
* gnu/packages/cran.scm (r-chemometricswithr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
25861356ed
gnu: Add r-iso. 
* gnu/packages/cran.scm (r-iso): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
00436e2cac
gnu: Add r-nnls. 
* gnu/packages/cran.scm (r-nnls): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
2871b670a8
gnu: Add r-kohonen. 
* gnu/packages/cran.scm (r-kohonen): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus
d0eb09a134
gnu: Add r-grimport. 
* gnu/packages/cran.scm (r-grimport): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
7eec973e81
gnu: Add r-tractor-base. 
* gnu/packages/cran.scm (r-tractor-base): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
b98662c53a
gnu: Add r-reportr. 
* gnu/packages/cran.scm (r-reportr): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
cb03d6c6f3
gnu: Add r-ore. 
* gnu/packages/cran.scm (r-ore): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
6e09f50613
gnu: Add r-shades. 
* gnu/packages/cran.scm (r-shades): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
f79e63a571
gnu: Add r-rnifti. 
* gnu/packages/cran.scm (r-rnifti): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
b2e777b27c
gnu: Add r-tfmpvalue. 
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
adcd0cc87e
gnu: Add r-splitstackshape. 
* gnu/packages/cran.scm (r-splitstackshape): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
5f0fbfc0ad
gnu: Add r-lassopv. 
* gnu/packages/cran.scm (r-lassopv): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
3d62d98e69
gnu: Add r-flare. 
* gnu/packages/cran.scm (r-flare): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
029425cbce
gnu: Add r-vbsr. 
* gnu/packages/cran.scm (r-vbsr): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
5574cb812a
gnu: Add r-rpostgresql. 
* gnu/packages/cran.scm (r-rpostgresql): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus
3088b3fc5b
gnu: Add r-rspectra. 
* gnu/packages/cran.scm (r-rspectra): New variable.
 2019-01-09 15:43:45 +01:00
Ludovic Courtès
0991fd5336
build: Require Guile 2.2. 
* configure.ac: Require Guile 2.2.
* README: Adjust accordingly.
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Deprecate.
(guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX.
 2019-01-09 14:47:53 +01:00
Eric Bavier
fefcb122ac
gnu: dvdisaster: Run regression tests. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument.
Add 'check' phase.
 2019-01-08 09:09:31 -06:00
Eric Bavier
98b0ec7fa6
gnu: dvdisaster: Install desktop file. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase.
 2019-01-08 09:09:25 -06:00
Clément Lassieur
627e6d8c11
gnu: prosody: Update to 0.11.1. 
* gnu/packages/messaging.scm (prosody): Update to 0.11.1.
[arguments]: Replace "Makefile" with "GNUmakefile".  Change "5.1" to "5.2".
Explain why there are no tests.
[inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket,
lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat,
lua5.2-socket, lua5.2-filesystem, lua5.2-sec.
 2019-01-08 15:23:36 +01:00
Clément Lassieur
eb5b6c5777
gnu: Add lua5.2-sec. 
* gnu/packages/lua.scm (lua5.2-sec): New variable.
(make-lua-sec): New procedure.
(lua5.1-sec, lua5.2-sec): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur
d994325747
gnu: Add lua-filesystem and lua5.2-filesystem. 
* gnu/packages/lua.scm (lua-filesystem, lua5.2-filesystem): New variables.
(make-lua-filesystem): New procedure.
(lua-filesystem, lua5.1-filesystem, lua5.2-filesystem): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur
253aab77c5
gnu: Add lua5.2-socket. 
* gnu/packages/lua.scm (lua5.2-socket): New variable.
(make-lua-socket): New procedure.
(lua5.1-socket, lua5.2-socket): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur
7c97a0631e
gnu: Add lua5.2-expat. 
* gnu/packages/lua.scm (lua5.2-expat): New variable.
(make-lua-expat): New procedure.
(lua5.1-expat, lua5.2-expat): Call it.
 2019-01-08 15:23:36 +01:00
Efraim Flashner
580f33e119
gnu: criu: Update to 3.11. 
* gnu/packages/virtualization.scm (criu): Update to 3.11.
[arguments]: Add custom phase to patch python calls.
 2019-01-08 12:29:42 +02:00
Efraim Flashner
49fe965d28
gnu: criu: Fix building on armhf-linux. 
* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm
version in the Makefile.
 2019-01-08 12:29:40 +02:00
Clément Lassieur
b509381089
gnu: gajim-omemo: Update to 2.6.26. 
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26.
 2019-01-08 10:19:55 +01:00
Clément Lassieur
5cfec72f39
gnu: gajim: Update to 1.1.1. 
* gnu/packages/messaging.scm (gajim): Update to 1.1.1.
[arguments]: Replace #:test-target with a 'check' phase.
 2019-01-08 10:19:55 +01:00
Tobias Geerinckx-Rice
eac5d425cd
gnu: tor: Update to 0.3.4.10. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.10.
 2019-01-08 04:21:53 +01:00
Tobias Geerinckx-Rice
be4f8391a4
gnu: privoxy: Update to 3.0.28. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.28.
 2019-01-08 04:21:52 +01:00
Rutger Helling
3c85058c0e
gnu: libnet: Update to 1.2-rc3. 
* gnu/packages/networking.scm (libnet): Update to 1.2-rc3.
[source]: Use git-fetch.
 2019-01-07 22:07:01 +01:00
Julien Lepiller
8737666a99
gnu: ocaml-graph: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
 2019-01-07 22:05:47 +01:00
Julien Lepiller
33af92dd99
gnu: Move coq packages from ocaml to coq. 
* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp)
(coq-coquelicot, coq-bignums, coq-interval): Move from here...
* gnu/packages/coq.scm: ... to here.  New file.
 2019-01-07 22:05:37 +01:00
Alex Kost
912f0541a3
gnu: emacs-guix: Update to 0.5.1.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
 2019-01-07 22:52:46 +03:00
Danny Milosavljevic
40c7476af8
gnu: containerd: Update synopsis. 
* gnu/packages/docker.scm (containerd)[synopsis]: Modify.
 2019-01-07 19:13:04 +01:00
Danny Milosavljevic
54891e850a
gnu: containerd: Enable tests. 
* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
 2019-01-07 19:12:14 +01:00
Ricardo Wurmus
1f1e338ad4
gnu: Add missing use-module clause. 
This is a follow-up to 4e5b8f7215.

* gnu/packages/docker.scm: Add missing use-module clause.
 2019-01-07 18:45:23 +01:00
Ricardo Wurmus
d53b23176f
gnu: Add r-corpcor. 
* gnu/packages/cran.scm (r-corpcor): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
e3bb076678
gnu: Add r-ddrtree. 
* gnu/packages/cran.scm (r-ddrtree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
9f33d76c33
gnu: Add r-qlcmatrix. 
* gnu/packages/cran.scm (r-qlcmatrix): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
58bc8857fb
gnu: Add r-combinat. 
* gnu/packages/cran.scm (r-combinat): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
13f5837b4c
gnu: Add r-densityclust. 
* gnu/packages/cran.scm (r-densityclust): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
b614009e6a
gnu: Add r-sparsesvd. 
* gnu/packages/cran.scm (r-sparsesvd): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
fbebccf7f6
gnu: Add r-docopt. 
* gnu/packages/cran.scm (r-docopt): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
45b469a472
gnu: Add r-rvcheck. 
* gnu/packages/cran.scm (r-rvcheck): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
61d7334906
gnu: Add r-tidytree. 
* gnu/packages/cran.scm (r-tidytree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
a6e4413d64
gnu: Add r-colorramps. 
* gnu/packages/cran.scm (r-colorramps): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
e37935e457
gnu: Add r-wordcloud. 
* gnu/packages/cran.scm (r-wordcloud): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
f3949fecb3
gnu: Add r-waveslim. 
* gnu/packages/cran.scm (r-waveslim): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
db084d79ea
gnu: Add r-tiff. 
* gnu/packages/cran.scm (r-tiff): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
44b0c5b5b1
gnu: Add r-fftwtools. 
* gnu/packages/cran.scm (r-fftwtools): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
71601a5d92
gnu: Add r-softimpute. 
* gnu/packages/cran.scm (r-softimpute): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
03a3ec5e18
gnu: Add r-adgoftest. 
* gnu/packages/cran.scm (r-adgoftest): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
a50abb3614
gnu: Add r-gsl. 
* gnu/packages/cran.scm (r-gsl): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
ced51a204e
gnu: Add r-stabledist. 
* gnu/packages/cran.scm (r-stabledist): New variable.
 2019-01-07 18:44:03 +01:00
Efraim Flashner
dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28. 
* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
 2019-01-07 19:42:41 +02:00
Danny Milosavljevic
4e5b8f7215
gnu: Add containerd. 
* gnu/packages/docker.scm (containerd): New variable.
 2019-01-07 16:41:17 +01:00
Danny Milosavljevic
7f2d67c826
gnu: Add dummy linker for arm-elf. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
 2019-01-07 16:39:35 +01:00
Ricardo Wurmus
2a2760a08f
gnu: Move R packages from geo.scm to cran.scm. 
* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics). 
* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics). 
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics). 
* gnu/packages/web.scm: Remove obsolete use-module clause.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm 
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
 2019-01-07 15:55:06 +01:00
Jelle Licht
41a010875b
gnu: biber: Update to 2.12. 
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-07 15:40:58 +01:00
Ricardo Wurmus
60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm. 
* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
 2019-01-07 15:21:09 +01:00
Ludovic Courtès
67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm. 
Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.

* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here.  Keep
private.
 2019-01-07 15:09:30 +01:00
Jelle Licht
37e461e6f4
gnu: perl-file-slurper: Update to 0.012. 
* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
 2019-01-07 15:08:08 +01:00
Ricardo Wurmus
92ce188331
gnu: Move R packages from web.scm to cran.scm. 
* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
 2019-01-07 15:05:27 +01:00
Pierre Neidhardt
3a3d4d9d54
Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files" 
This reverts commit 5bc2e14add.
 2019-01-07 14:58:40 +01:00
Efraim Flashner
6fd2ed23ac
gnu: mantis: Limit to x86_64-linux. 
* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
 2019-01-07 15:47:34 +02:00