Ricardo Wurmus
0047d26a22
gnu: bowtie: Update to 2.2.6.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
Ludovic Courtès
76002e54f2
gnu: gawk: Protect against random failures of the 'fts' test.
...
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-14 10:43:08 +01:00
Ludovic Courtès
8c986ab120
Merge branch 'master' into core-updates
2016-01-13 18:18:48 +01:00
Eric Bavier
c91d3fb7f4
gnu: boost: Update to 1.60.0.
...
* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
Mark H Weaver
203795acea
gnu: perl: Add fix for CVE-2015-8607.
...
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
2016-01-12 13:12:07 -05:00
Mark H Weaver
16aa649117
gnu: sudo: Add fix for CVE-2015-5602.
...
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
Ben Woodcroft
9b9b7ffd8e
gnu: bedtools: Update to 2.25.0.
...
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
Mark H Weaver
bea25ae83c
gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
...
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
2016-01-08 15:29:50 -05:00
Leo Famulari
62339e2d49
gnu: w3m: Enable SSL, disable broken protocols and ciphers.
...
Fixes <http://bugs.gnu.org/16791 >.
* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00
Leo Famulari
e6352001c4
gnu: w3m: Update patch to use '-p1'.
...
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
2016-01-07 02:35:38 -05:00
Efraim Flashner
93b3a8b0ee
gnu: flex: Update to 2.6.0.
...
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
2016-01-07 08:42:15 +02:00
Efraim Flashner
5a75865f9d
gnu: gnutls: Update to 3.4.7.
...
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
2016-01-05 21:06:59 +02:00
Roel Janssen
a7ec569c98
gnu: Add LDC.
...
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
(dist_patch_DATA): Add patch file.
2016-01-05 16:24:57 +01:00
Ludovic Courtès
a2ab82db9a
gnu: python: Honor 'C_INCLUDE_PATH'.
...
This is a followup to 009b53fd
.
* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
2016-01-05 13:13:17 +01:00
Ricardo Wurmus
4828ff91ff
gnu: gtk+: Add patch to support GUIX_GTK3_PATH.
...
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
2016-01-04 16:11:10 -05:00
Ricardo Wurmus
2a6afac905
gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH.
...
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
2016-01-04 16:11:10 -05:00
Ricardo Wurmus
c2e87caaa6
gnu: julia: Update to 0.4.2.
...
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
2016-01-04 11:35:57 +01:00
Ludovic Courtès
53334dd6e9
Merge branch 'master' into core-updates
2016-01-03 14:53:03 +01:00
Ludovic Courtès
1575dcd134
gnu: grep: Skip timing-sensitive test.
...
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw >.
* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
2016-01-03 14:50:29 +01:00
Eric Bavier
209778717a
gnu: Add Asymptote.
...
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-02 16:04:55 -06:00
Ludovic Courtès
e80d2555f5
gnu: findutils: Update to 4.6.0.
...
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0. Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
2016-01-01 01:05:06 +01:00
Leo Famulari
b7e7d1b9d3
gnu: fuse: Update to 2.9.4.
...
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
[source]: Remove patch.
2015-12-29 14:20:55 -05:00
Mark H Weaver
097190417f
gnu: icecat: Update to 38.5.0-gnu1.
...
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-7205.patch,
gnu/packages/patches/icecat-CVE-2015-7210.patch,
gnu/packages/patches/icecat-CVE-2015-7212.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7214.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
[source]: Remove patches.
2015-12-23 18:19:59 -05:00
Leo Famulari
f0150f8724
gnu: grub: Add fix for CVE-2015-8730.
...
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
2015-12-21 12:33:55 -05:00
Ludovic Courtès
8309c3899a
gnu: commencement: Use GMP 6.0.0a for bootstrapping.
...
* gnu/packages/multiprecision.scm (gmp-6.0): New variable.
* gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated
from before e414a7d
.
* gnu-system.am (dist_patch_DATA): Add it.
2015-12-18 18:38:22 +01:00
Mark H Weaver
3faf214a0b
gnu: icecat: Add fixes for several security flaws.
...
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-7205.patch,
gnu/packages/patches/icecat-CVE-2015-7210.patch,
gnu/packages/patches/icecat-CVE-2015-7212.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7214.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
2015-12-17 14:12:06 -05:00
Federico Beffa
fceac88039
gnu: python-ipython: Patch 'ctypes' bug.
...
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: New patch.
* gnu/packages/python.scm (python-ipython): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2015-12-15 18:05:42 +01:00
Efraim Flashner
9c1c2a7f8d
gnu: bluez: Update to 5.36.
...
* gnu/packages/linux.scm (bluez): Update to 5.36.
[source]: Remove patch.
* gnu/packages/patches/bluez-tests.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-12-14 11:06:20 +02:00
Ludovic Courtès
4187fe750f
gnu: perl: Build deterministically, and make byproducts deterministic.
...
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.
* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
2015-12-13 11:28:54 +01:00
Ludovic Courtès
4de3507483
gnu: perl: Update to 5.22.0.
...
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0. Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name. Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-12-13 11:28:54 +01:00
Ludovic Courtès
e82e55e58c
Merge branch 'master' into core-updates
2015-12-12 11:48:46 +01:00
Ludovic Courtès
6a4db3f361
gnu: libarchive: Fix test failure on SELinux systems.
...
Reported by Jan Synáček <jan.synacek@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00522.html >.
* gnu/packages/patches/libarchive-bsdtar-test.patch: New file.
* gnu/packages/backup.scm (libarchive)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2015-12-09 23:10:10 +01:00
Mark H Weaver
821060f3f6
gnu: libxml2: Update to 2.9.3.
...
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-8035.patch,
gnu/packages/patches/libxml2-bug-737840.patch,
gnu/packages/patches/libxml2-bug-738805.patch,
gnu/packages/patches/libxml2-bug-746048.patch,
gnu/packages/patches/libxml2-bug-747437.patch,
gnu/packages/patches/libxml2-bug-751603.patch,
gnu/packages/patches/libxml2-bug-751631.patch,
gnu/packages/patches/libxml2-bug-754946.patch,
gnu/packages/patches/libxml2-bug-754947.patch,
gnu/packages/patches/libxml2-bug-755857.patch,
gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
gnu/packages/patches/libxml2-node-sort-order-pt2.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2): Update to 2.9.3. Remove patches.
2015-12-07 09:54:01 -05:00
Leo Famulari
99fffa8ae0
gnu: Add python-configobj.
...
* gnu/packages/python.scm (python-configobj, python2-configobj): New
variables.
* gnu/packages/patches/python-configobj-setuptools.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-12-05 09:44:37 -05:00
Mark H Weaver
b9fa245fcd
gnu: icecat: Update to 38.4.0-gnu1.
...
* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
gnu/packages/patches/icecat-CVE-2015-7188.patch,
gnu/packages/patches/icecat-CVE-2015-7189.patch,
gnu/packages/patches/icecat-CVE-2015-7193.patch,
gnu/packages/patches/icecat-CVE-2015-7194.patch,
gnu/packages/patches/icecat-CVE-2015-7196.patch,
gnu/packages/patches/icecat-CVE-2015-7197.patch,
gnu/packages/patches/icecat-CVE-2015-7198.patch,
gnu/packages/patches/icecat-CVE-2015-7199.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.4.0-gnu1. Remove the
obsolete patches.
2015-12-04 15:52:16 -05:00
Andreas Enge
e414a7dec3
gnu: gmp: Drop patch included in release 6.1.0.
...
* gnu/packages/multiprecision.scm (gmp)[source]: Drop patch.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
2015-12-02 20:03:51 +01:00
Federico Beffa
1bbc659fd2
gnu: python-matplotlib: Add 'TkAgg' backend and update to version '1.4.3'.
...
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Do it.
* gnu/packages/patches/matplotlib-setupext-tk.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch.
2015-12-02 18:21:13 +01:00
Ludovic Courtès
9820a6d4a0
gnu: python: Make 'sys.version' deterministic.
...
* gnu/packages/patches/python-2-deterministic-build-info.patch,
gnu/packages/patches/python-3-deterministic-build-info.patch: New
files.
* gnu/packages/python.scm (python-2, python): Use them.
* gnu-system.am (dist_patch_DATA): Add them.
2015-11-29 22:59:28 +01:00
Ludovic Courtès
dedc832070
gnu: python-2: Honor 'SOURCE_DATE_EPOCH'.
...
* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
[arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
procedure.
(%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
2015-11-29 22:59:28 +01:00
Ludovic Courtès
f8e7fdc416
gnu: tcl: Produce 'tclIndex' files deterministically.
...
* gnu/packages/patches/tcl-mkindex-deterministic.patch: New patch.
* gnu/packages/tcl.scm (tcl)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-29 22:59:28 +01:00
宋文武
79c8a071e7
tk: Hardcode path to TK_LIBRARY.
...
Fixes <http://bugs.gnu.org/20889 >.
* gnu/packages/patches/tk-find-library.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tk)[source]: Add patch.
2015-11-29 22:59:28 +01:00
Ludovic Courtès
cb7bd0cff5
gnu: weechat: Dynamically link against libpython2.7.so.
...
* gnu/packages/patches/weechat-python.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/weechat.scm (weechat)[source]: Use it.
2015-11-29 19:17:33 +01:00
Ludovic Courtès
f79a576e77
gnu: jasper: Patch CVE-2008-3522.
...
* gnu/packages/patches/jasper-CVE-2008-3522.patch: New file.
* gnu/packages/image.scm (jasper)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-28 16:29:11 +01:00
David Thompson
33ae9107d8
gnu: Add tinyxml.
...
* gnu/packages/xml.scm (tinyxml): New variable.
* gnu/packages/patches/tinyxml-use-stl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-25 11:44:11 -05:00
Ludovic Courtès
b6094b1f0a
gnu: dico: Sort entries in .a files deterministically.
...
* gnu/packages/patches/dico-libtool-deterministic.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
[arguments]: Add #:make-flags.
* gnu-system.am (dist_patch_DATA): Add the patch.
2015-11-25 11:59:54 +01:00
Ricardo Wurmus
7775a18690
gnu: Add Synfig.
...
* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-20 20:23:03 +01:00
Eric Bavier
2f5b6a1f18
gnu: hwloc: Update to 1.11.1.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
[source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 11:58:40 -06:00
Ricardo Wurmus
0297966495
gnu: guitarix: Update to 0.34.0.
...
* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 18:19:30 +01:00
Ricardo Wurmus
b49c5a58dc
gnu: preseq: Update to 2.0.
...
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
file.
* gnu-system.am (dist_patch_DATA): Remove them.
2015-11-20 15:22:06 +01:00
Mark H Weaver
3470fe002c
gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805.
...
* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
2015-11-18 17:47:40 -05:00
Mark H Weaver
b4a88dc25f
gnu: libxslt: Add fix for CVE-2015-7995.
...
* gnu/packages/patches/libxslt-CVE-2015-7995.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[source]: Add patch.
2015-11-18 17:47:40 -05:00
Mark H Weaver
ee6bb0cc76
gnu: libxml2: Add fixes for CVE-2015-{1819,7941,7942,8035} and other bugs.
...
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-8035.patch,
gnu/packages/patches/libxml2-bug-737840.patch,
gnu/packages/patches/libxml2-bug-738805.patch,
gnu/packages/patches/libxml2-bug-746048.patch,
gnu/packages/patches/libxml2-bug-747437.patch,
gnu/packages/patches/libxml2-bug-751603.patch,
gnu/packages/patches/libxml2-bug-751631.patch,
gnu/packages/patches/libxml2-bug-754946.patch,
gnu/packages/patches/libxml2-bug-754947.patch,
gnu/packages/patches/libxml2-bug-755857.patch,
gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
gnu/packages/patches/libxml2-node-sort-order-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[source]: Add patches.
2015-11-18 17:47:40 -05:00
Ricardo Wurmus
3279b7ec47
gnu: Add Scribus.
...
* gnu/packages/scribus.scm: New file
* gnu/packages/patches/scribus-qobject.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES, dist_patch_DATA): Add them.
2015-11-17 08:43:32 +01:00
David Thompson
3aab2c839f
gnu: Add devil.
...
* gnu/packages/image.scm (devil): New variable.
* gnu/packages/patches/devil-fix-libpng.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-16 08:47:23 -05:00
宋文武
0cc2284819
gnu: procps: Update to 3.3.11.
...
procps-ng is the new upstream.
* gnu/packages/procps.scm (procps): Update to 3.3.11.
[source]: Adjust formatting. Remove patches.
[home-page]: Update URL.
* gnu/packages/patches/procps-make-3.82.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-16 16:06:49 +08:00
Alex Kost
6f4b23e674
gnu: emacs: Honor 'SOURCE_DATE_EPOCH'.
...
Suggested by Ludovic Courtès <ludo@gnu.org>.
* gnu/packages/patches/emacs-source-date-epoch.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
2015-11-14 21:59:37 +03:00
Mark H Weaver
ff45a00e79
gnu: mit-krb5: Add fixes for CVE-2015-{2695,2696,2697,2698}.
...
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/mit-krb5.scm (mit-krb5)[native-inputs]: Add patches.
2015-11-13 12:42:47 -05:00
Mark H Weaver
9715df7fbe
gnu: mit-krb5: Update to 1.13.2.
...
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.2.
[native-inputs]: Remove "patch/init-fix".
* gnu/packages/patches/mit-krb5-init-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-13 12:42:47 -05:00
Mark H Weaver
419630e0be
gnu: wpa-supplicant: Add fixes for CVE-2015-{5310,5314,5315,5316}.
...
* gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch,
gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch,
gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch,
gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Add patches.
2015-11-11 07:45:11 -05:00
Ludovic Courtès
ba583bd2ce
gnu: torsocks: Upgrade to 2.0.0.
...
* gnu/packages/tor.scm (torsocks): Update to 2.0.0.
[source]: Fetch from git.torproject.org. Use
'torsocks-dns-test.patch'.
[arguments, native-inputs]: New fields.
[license]: Change to GPL2.
* gnu/packages/patches/torsocks-dns-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-11 00:37:50 +01:00
Taylan Ulrich Bayırlı/Kammer
e6974eae1d
gnu: Add mupen64plus-ui-console.
...
* gnu/packages/games.scm (mupen64plus-ui-console): New variable.
* gnu/packages/patches/mupen64plus-ui-console-notice.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-10 22:14:44 +01:00
Leo Famulari
0f9c1f3400
gnu: Build lua-5.2 with a dynamic library
...
* gnu/packages/patches/lua52-liblua-so.patch: New file.
* gnu/packages/lua.scm (lua-5.2): Use lua52-liblua-so.patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-11-08 22:21:19 +01:00
Ludovic Courtès
9eb681a02d
gnu: grep: Update to 2.22.
...
* gnu/packages/base.scm (grep): Upgrade to 2.22. Remove
'grep-CVE-2015-1345.patch'.
* gnu/packages/patches/grep-CVE-2015-1345.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-11-07 22:01:04 +01:00
Mark H Weaver
0ca1eb705d
gnu: icecat: Add several security fixes.
...
* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
gnu/packages/patches/icecat-CVE-2015-7188.patch,
gnu/packages/patches/icecat-CVE-2015-7189.patch,
gnu/packages/patches/icecat-CVE-2015-7193.patch,
gnu/packages/patches/icecat-CVE-2015-7194.patch,
gnu/packages/patches/icecat-CVE-2015-7196.patch,
gnu/packages/patches/icecat-CVE-2015-7197.patch,
gnu/packages/patches/icecat-CVE-2015-7198.patch,
gnu/packages/patches/icecat-CVE-2015-7199.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
2015-11-07 08:33:16 -05:00
Eric Bavier
b95bcb8ae0
gnu: Add byobu.
...
* gnu/packages/screen.scm (byobu): New variable.
* gnu/packages/patches/byobu-writable-status.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-03 17:08:41 -06:00
Efraim Flashner
f133955122
gnu: gsl: Update to 2.0.
...
* gnu/packages/maths.scm (gsl): Update to 2.0.
[source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
2015-11-02 21:04:18 +02:00
Ludovic Courtès
3c3e69728c
gnu: guitarix: Compile in C++11 mode.
...
* gnu/packages/patches/guitarix-c++11.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (guitarix)[source]: Use it.
[arguments]: Add --cxxflags to #:configure-flags.
2015-10-31 13:17:23 +01:00
宋文武
eed588d997
Merge branch 'master' into dbus-update
2015-10-30 20:50:26 +08:00
David Thompson
b90e7e5d49
gnu: xfce4-session: Fix xflock4.
...
* gnu/packages/patches/xfce4-session-fix-xflock4.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xfce.scm (xfce4-session)[source]: Add patch.
2015-10-30 08:42:43 -04:00
Mark H Weaver
51de92a08e
gnu: unzip: Reorganize security fixes for improved clarity.
...
* gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete
file. Its contents are now split into the following new files:
* gnu/packages/patches/unzip-CVE-2015-7696.patch,
gnu/packages/patches/unzip-CVE-2015-7697.patch,
gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
2015-10-23 23:12:06 -04:00
Mark H Weaver
d3365d4866
Merge branch 'master' into dbus-update
2015-10-23 23:11:38 -04:00
Mark H Weaver
71eb843837
gnu: unzip: Reorganize security fixes for improved clarity.
...
* gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete
file. Its contents are now split into the following new files:
* gnu/packages/patches/unzip-CVE-2015-7696.patch,
gnu/packages/patches/unzip-CVE-2015-7697.patch,
gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
2015-10-23 15:35:46 -04:00
宋文武
6747de140d
gnu: bluez: Update to 5.35, fix test.
...
* gnu/packages/patches/bluez-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (bluez): Update to 5.35.
[source]: Add patch.
2015-10-23 22:23:34 +08:00
Eric Bavier
c595cd47d8
gnu: evilwm: Add patch for lost-focus bug.
...
* gnu/packages/patches/evilwm-lost-focus-bug.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/wm.scm (evilwm)[source]: Use it.
2015-10-22 17:47:37 -05:00
Mark H Weaver
2442e69e41
Revert "gnu: unzip: Reorganize security fixes for improved clarity."
...
This reverts commit c46c931ecf
.
2015-10-22 17:10:41 -04:00
Mark H Weaver
c46c931ecf
gnu: unzip: Reorganize security fixes for improved clarity.
...
* gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete
file. Its contents are now split into the following new files:
* gnu/packages/patches/unzip-CVE-2015-7696.patch,
gnu/packages/patches/unzip-CVE-2015-7697.patch,
gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
2015-10-22 14:58:03 -04:00
Ludovic Courtès
da51f5bb01
gnu: dbus: Add variant with proper helper for service activation.
...
* gnu/packages/patches/dbus-helper-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (dbus/activation): New variable.
2015-10-22 00:26:11 +02:00
Mark H Weaver
b2aab72c14
gnu: libdrm: Fix symbol check tests on mips64el and armhf.
...
* gnu/packages/patches/libdrm-symbol-check.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (libdrm)[source]: Add patch.
2015-10-19 00:37:53 -04:00
Mark H Weaver
ccb522324b
Merge branch 'master' into dbus-update
2015-10-17 19:08:53 -04:00
宋文武
5f37e56ba4
gnu: librsvg: Fix tests.
...
GLib doesn't allow duplicate test case paths any more.
* gnu/packages/patches/librsvg-tests.patch: New file.
* gnu/packages/gnome.scm (librsvg)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-10-17 10:30:25 +08:00
Andreas Enge
d82633d06a
gnu: mutt: Update to 1.5.24.
...
* gnu/packages/patches/mutt-CVE-2014-9116.patch: Delete file.
* gnu/packages/mail.scm (mutt): Update to 1.5.24.
[source]: Update and remove patch.
* gnu-system.am (dist_patch_DATA): Unregister removed patch.
2015-10-16 22:58:07 +02:00
宋文武
e75230c1b7
gnu: eudev: Update to 3.1.5.
...
* gnu/packages/linux.scm (eudev): Update to 3.1.5.
* gnu/packages/patches/eudev-rules-directory.patch: Adapt to it.
2015-10-16 21:13:02 +08:00
宋文武
1c255eeec9
gnu: Remove dbus-localstatedir.patch.
...
This is a followup to 25087f.
* gnu/packages/patches/dbus-localstatedir.patch: Remove file.
2015-10-14 21:42:07 +08:00
Ludovic Courtès
53b5856ac1
gnu: glib: Update to 2.46.0.
...
* gnu/packages/glib.scm (glib): Update to 2.46.0.
* gnu/packages/patches/glib-tests-desktop.patch: Add hunk to disable
'gdbus-unix-addresses' test.
2015-10-14 14:41:26 +02:00
Ludovic Courtès
bbe04ae102
gnu: dbus: Update to 1.10.0.
...
* gnu/packages/glib.scm (dbus)[source]: Update to 1.10.0.
[arguments]: Add --sysconfdir=/etc.
* gnu/packages/patches/dbus-localstatedir.patch: Update.
2015-10-14 14:41:26 +02:00
Mark H Weaver
9f7ae77fe2
gnu: icecat: Update to 38.3.0-gnu1.
...
* gnu/packages/patches/icecat-CVE-2015-4473-partial.patch,
gnu/packages/patches/icecat-CVE-2015-4482.patch,
gnu/packages/patches/icecat-CVE-2015-4488.patch,
gnu/packages/patches/icecat-CVE-2015-4489.patch,
gnu/packages/patches/icecat-CVE-2015-4491.patch,
gnu/packages/patches/icecat-CVE-2015-4492.patch,
gnu/packages/patches/icecat-CVE-2015-4495.patch,
gnu/packages/patches/icecat-enable-acceleration-and-webgl.patch,
gnu/packages/patches/icecat-libvpx-1.4.patch: Delete files.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: New file.
* gnu-system.am (dist_patch_DATA): Add new patch. Remove the deleted ones.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.3.0-gnu1.
[source]: Add new patch. Remove the deleted ones.
[inputs]: Add libxcomposite.
[arguments]: Add 'ensure-no-mtimes-pre-1980' phase. Adapt
'remove-h264parse-from-blacklist' and
'arrange-to-link-libxul-with-libraries-it-might-dlopen' phases to the
new version.
2015-10-14 01:41:56 -04:00
Ludovic Courtès
adc90e0eac
Merge branch 'core-updates'
2015-10-12 21:42:06 +02:00
Ricardo Wurmus
c23c50c734
gnu: Add MARS.
...
* gnu/packages/games.scm (mars): New variable.
* gnu/packages/patches/mars-install.patch: New file.
* gnu/packages/patches/mars-sfml-2.3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
2015-10-11 15:52:59 +02:00
Mark H Weaver
b81378251c
Merge branch 'master' into core-updates
2015-10-08 10:59:39 -04:00
Mark H Weaver
b5881775ac
gnu: libunwind: Add fix for CVE-2015-3239.
...
* gnu/packages/patches/libunwind-CVE-2015-3239.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/libunwind.scm (libunwind)[source]: Add patch.
2015-10-08 10:55:52 -04:00
Mark H Weaver
f956d661ad
gnu: libwmf: Add fixes for several security flaws.
...
* gnu/packages/patches/libwmf-CAN-2004-0941.patch,
gnu/packages/patches/libwmf-CVE-2007-0455.patch,
gnu/packages/patches/libwmf-CVE-2007-2756.patch,
gnu/packages/patches/libwmf-CVE-2007-3472.patch,
gnu/packages/patches/libwmf-CVE-2007-3473.patch,
gnu/packages/patches/libwmf-CVE-2007-3477.patch,
gnu/packages/patches/libwmf-CVE-2009-3546.patch: New files.
* gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: Delete
file. Replace with ...
* gnu/packages/patches/libwmf-CVE-2015-0848+CVE-2015-4588.patch,
gnu/packages/patches/libwmf-CVE-2015-4695.patch,
gnu/packages/patches/libwmf-CVE-2015-4696.patch: ... these new files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image.scm (libwmf)[source]: Adjust set of patches.
2015-10-08 10:46:30 -04:00
Mark H Weaver
48e4a9f32f
gnu: unzip: Add various fixes.
...
* gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch: Delete
file. Replace with ...
* gnu/packages/patches/unzip-overflow-long-fsize.patch: ... this new file.
* gnu/packages/patches/unzip-attribs-overflow.patch,
gnu/packages/patches/unzip-fix-overflows-and-infloop.patch,
gnu/packages/patches/unzip-format-secure.patch: New files.
* gnu/packages/patches/unzip-CVE-2014-9636.patch: Replace contents with
fixed patch from Fedora.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust list of patches.
2015-10-08 10:07:44 -04:00
Mark H Weaver
e91e28d60c
gnu: wpa-supplicant: Update to 2.5.
...
* gnu/packages/patches/wpa-supplicant-2015-2-fix.patch,
gnu/packages/patches/wpa-supplicant-2015-3-fix.patch,
gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch,
gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch,
gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch,
gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch,
gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch,
gnu/packages/patches/wpa-supplicant-2015-5-fix.patch,
gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.5.
Remove patches.
2015-10-08 09:15:30 -04:00
Mark H Weaver
319fe79dd0
Merge branch 'master' into core-updates
2015-10-07 23:55:17 -04:00
Mark H Weaver
a606ed89d4
gnu: webkitgtk-2.4: Fix potential code execution vulnerability.
...
* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/webkit.scm (webkitgtk-2.4)[source]: Add patch.
2015-10-07 22:54:09 -04:00
Mark H Weaver
7ab73c4add
gnu: openjpeg-2.x: Add fix for CVE-2015-6581.
...
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0)[source]: Add patch.
2015-10-07 22:18:13 -04:00
Ludovic Courtès
6a20289d5a
gnu: python: Simplify list of configure flags.
...
* gnu/packages/patches/python-2.7-search-paths.patch,
gnu/packages/patches/python-3-search-paths.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/python.scm (python-2)[source]: Use first patch.
[arguments]: Remove now unneeded CPPFLAGS and LDFLAGS.
(python)[source]: Use second patch.
(python-minimal)[arguments]: Remove CPPFLAGS and LDFLAGS.
2015-10-08 00:05:34 +02:00
Ludovic Courtès
42e735dfc7
gnu: gmp: Skip unreliable test.
...
* gnu/packages/patches/gmp-faulty-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/multiprecision.scm (gmp)[source]: Use it.
2015-10-06 15:18:44 +02:00
Ludovic Courtès
85e5721421
gnu: glibc: Look for locale data in versioned sub-directories.
...
Suggested by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/glibc-versioned-locpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
[arguments]: Add explicit version sub-directory to
libc_cv_localedir.
[native-search-paths]: Use 'GUIX_LOCPATH' instead of 'LOCPATH'.
(glibc-locales, glibc-utf8-locales): Write to a VERSION
sub-directory.
2015-10-05 22:34:50 +02:00
Ludovic Courtès
f211b2af67
Revert "gnu: glibc: Honor 'GUIX_LOCPATH'."
...
This reverts commits fbb909ac7e
and 2ebe938c2f
.
2015-10-05 22:34:34 +02:00