When running R in a container like this
guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 'Sys.timezone()'
it would print an additional line
sh: rm: command not found
before exiting.
* gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
to patch call to `rm` and rename phase to reflect what it does now.
* gnu/packages/python-xyz.scm (python-cloudpickle-testpkg): New variable.
(python-cloudpickle): Update to 1.6.0; inherit from
python-cloudpickle-testpkg.
[source]: Fetch from git repository.
[native-inputs]: Add python-cloudpickle-testpkg; replace python-tornado with
python-tornado-6.
* gnu/packages/python-xyz.scm (python2-cloudpickle)[version]: Explicitly set
to 1.3.0.
[source]: Copy from base package.
[native-inputs]: Do not inherit; copy.
* gnu/packages/julia.scm (julia): Update to 1.6.1.
[arguments]: Adjust custom 'prepare-deps phase. Remove custom
'fix-precompile phase. Add new 'shared-objects-path phase to fix paths
to shared objects. Add new 'adjust-test-suite phase to adjust for
differences in bundled vs packaged libraries. Adjust custom
'disable-broken-tests phase for new version. Add symlinks to libs in
'symlink-libraries phase. In make-flags add more finegrained compilation
targets for x86_64-linux. Update make-flags for changes since last
version.
[inputs]: Add nghttp2:lib, gfortran:lib, curl-ssh. Remove arpack-ng,
curl. Sort alphabetically.
[native-inputs]: Add nss-certs. Sort alphabetically.
(libuv-julia): Update to newer revision.
(libunwind-julia)[source]: Add new patch.
(llvm-julia): Inherit from llvm-11.
[source]: Update patch list.
[arguments]: Apply minority of the Julia specific patches in
'julia-patches phase.
[inputs]: Add julia patches.
Co-Authored-By: Nicolò Balzarotti <nicolo@nixo.xyz>.
Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Co-Authored-By: Efraim Flashner <efraim@flashner.co.il>.
There was/is something funny going on with the bootstrap glibc. The
symbol for posix_spawnp points to getopt_r. Which in turn leads to a
lot of crashed in tests later on. I extended the glibc-bootstrap patch
to work around this bug.
* gnu/packages/patches/glibc-bootstrap-system.patch: Adjust patch to
work correctly with new architectures.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Move the dictionary directory to be next to the lisp files, where it is
expected to be.
* gnu/packages/emacs-xyz.scm (emacs-typit)[arguments]
<#:phases>: Remove install-dictionaries phase.
<#:include>: Include dictionaries.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu/packages/gl.scm (mesa-opencl-icd): Use absolute path for OpenCL
platform library in "mesa.icd" file. With this patch setting
LD_LIBRARY_PATH=$LIBRARY_PATH is no longer needed to run OpenCL
applications.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Partly fixes <https://issues.guix.gnu.org/49439>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
When running the command:
guix environment pigx-scrnaseq --search-paths --no-grafts
this change reduces total heap allocations from 1.4GiB to 717MiB (49%)
and wall-clock time from 7.5s to 5.7s (24%).
Without '--no-grafts', heap allocations go from 2.1GiB to 1.4GiB (33%)
and wall-clock time from 12.1s to 10.9s (10%).
* guix/derivations.scm (coalesce-duplicate-inputs): Rewrite using a hash
table to make it O(N) rather than O(N²).
