Commit graph

50362 commits

Author SHA1 Message Date
Florian Pelz
7082fa321d
news: Fix 'de' translation typo.
* etc/news.scm: Fix typo.
2019-11-16 10:25:24 +00:00
Ludovic Courtès
87e7faa2ae
time-machine: Honor the standard build options.
* guix/scripts/time-machine.scm (show-help): Call 'show-build-options-help'.
(%options): Add %STANDARD-BUILD-OPTIONS.
(%default-options): New variable.
(parse-args): Pass (list %default-options) to 'parse-command-line' and
remove #:build-options? parameter.
(guix-time-machine): Call 'set-build-options-from-command-line' and wrap
'cached-channel-instance' call in 'with-status-verbosity'.
* doc/guix.texi (Invoking guix time-machine): Mention common build options.
2019-11-15 23:29:06 +01:00
Ludovic Courtès
d17e012da7
time-machine: Handle 'git-error' exceptions.
* guix/scripts/pull.scm (with-git-error-handling): Export.
* guix/scripts/time-machine.scm (guix-time-machine): Wrap body in
'with-git-error-handling'.
2019-11-15 23:29:06 +01:00
Konrad Hinsen
067305977c
news: Add entry for "guix time-machine".
* etc/news.scm: Add entry for 'guix time-machine'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15 23:29:06 +01:00
Konrad Hinsen
1d5485690b
inferior: 'cached-channel-instance' takes an open store connection.
* guix/inferior.scm (cached-channel-instance): Take an explicit 'store'
argument.
(inferior-for-channels): Wrap call to 'cached-channel-instance' in
'with-store'.
* guix/time-machine.scm (guix-time-machine): Wrap call to
'cached-channel-instance' in 'with-store'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15 23:28:17 +01:00
Konrad Hinsen
f675f8dec7
Add 'guix time-machine'.
* guix/scripts/time-machine.scm: New file.
* Makefile.am: (MODULES): Add it.
* guix/scripts/pull.scm (channel-list): Export.
* guix/inferior.scm (cached-channel-instance): New procedure.
(inferior-for-channels): Use it.
* doc/guix.texi (Invoking guix time-machine): New section.
(Channels): Cross-reference it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15 23:28:17 +01:00
Ludovic Courtès
1edcfda81b
pull: Remove unused '--verbose' option.
This option had been ignored since commit
0d39a3b989 (August 2018).

* guix/scripts/pull.scm (show-help, %options): Remove "--verbose".
(build-and-install): Remove #:verbose?, which was unused.
(guix-pull): Adjust accordingly.
2019-11-15 23:28:17 +01:00
Ludovic Courtès
6f160c5c38
Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."
This reverts commit eaa52b5baa,
which would lead to build failures on systems other than x86_64-linux.
2019-11-15 23:28:17 +01:00
Ludovic Courtès
96a469f1cd
gnu: openmpi: Fix typo.
* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported
systems of UCX, not PSM2.
2019-11-15 23:28:17 +01:00
Eric Bavier
257e63044f
gnu: tomb: Use system's sudo.
* gnu/packages/crypto.scm (tomb)[arguments]: Disallow references to the "sudo"
input.  Remove it's path from the wrapper.
2019-11-15 14:59:16 -06:00
Eric Bavier
417df5bb57
gnu: tomb: Add lsof input for "ps" and "slam".
* gnu/packages/crypto.scm (tomb)[inputs]: Add lsof.
[arguments]: Add it to the wrapper PATH.
2019-11-15 14:59:16 -06:00
Eric Bavier
4535eb91c3
gnu: tomb: Update to 2.7.
* gnu/packages/patches/tomb-fix-errors-on-open.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/crypto.scm (tomb): Update to 2.7.
[source]: Use the patch.
2019-11-15 14:59:07 -06:00
Ivan Vilata-i-Balaguer
528b52390d
gnu: CMake: Add version 3.15.5.
Add CMake version 3.15.5 but do not replace the existing version to avoid
triggering the rebuild of all CMake-based packages.

See <https://issues.guix.gnu.org/issue/38060>.

* gnu/packages/cmake.scm (cmake-3.15.5): Add CMake 3.15.5.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-15 19:09:13 +01:00
Marius Bakke
ba261f6318
gnu: ungoogled-chromium: Update to 78.0.3904.97-0.acaf163.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for
Chromium 78.
(%chromium-version): Set to 78.0.3904.97.
(%ungoogled-revision): Set to acaf16383f264d8a2f24142ad054c9b4355771d3.
(%debian-revision): Set to e43d74632091324774a5049668782dba7b09cf72.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(gentoo-patches, %auxiliary-patches): Remove variables.
(ungoogled-chromium-source): Adjust Debian patches for 78.  Don't apply
%AUXILIARY-PATCHES.
(libvpx/chromium): New variable.
(ungoogled-chromium)[arguments]: Add substitution for ICU headers.  Adjust
other substitutions for 78.  Remove obsolete workaround.  Increase ulimit in
'build' phase.  Don't install '22x22' icon, which no longer exists.
[inputs]: Change from LIBVPX to LIBVPX/CHROMIUM.
[properties]: Remove HIDDEN?.
(ungoogled-chromium-wayland)[inputs]: Don't remove inherited inputs.
(ungoogled-chromium-is-deprecated, ungoogled-chromium-wayland-is-deprecated):
Remove variables.
2019-11-15 19:09:13 +01:00
Marius Bakke
97b672d99f
gnu: gn: Enable tests.
* gnu/packages/build-tools.scm (gn)[arguments]: Remove #:tests?.  Override
'check' phase.
2019-11-15 19:09:13 +01:00
Marius Bakke
d922724521
gnu: gn: Update to 0.0-1666.6e5ba2e.
* gnu/packages/build-tools.scm (gn): Update to 0.0-1666.6e5ba2e.
[arguments]: Do not override LDFLAGS.
2019-11-15 19:09:13 +01:00
Ludovic Courtès
faab7082ab
gnu: openmpi: Raise the priority of the PSM2 component.
This allows us to get better performance by default on machines with
OmniPath hardware.

* gnu/packages/patches/openmpi-psm2-priority.patch: New file.
* gnu/packages/mpi.scm (openmpi)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
348caf3d2c
gnu: psm: Add "debug" output.
* gnu/packages/linux.scm (psm)[outputs]: New field.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
58a536bb1b
gnu: openmpi, slurm: Switch to hwloc 2.x.
* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
8c8e108978
gnu: hwloc: Update to 2.1.0.
* gnu/packages/mpi.scm (hwloc-2.0): Rename to...
(hwloc-2): ... this.  Update to 2.1.0
(hwloc-2.0): Define as deprecated.
* gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
52cd164aad
gnu: slurm: Build shared libraries only.
* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
2019-11-15 17:52:45 +01:00
Ludovic Courtès
7c96befa52
gnu: slurm: Update to 19.05.3-2.
* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2.
[source](snippet): Keep "contribs/mpi" and its reference in
'Makefile.am'.
[inputs]: Remove OPENSSL.
[arguments]: Remove "--with-ssl".  Add 'install-libpmi' phase.
2019-11-15 17:52:44 +01:00
Ludovic Courtès
c1ea4c0793
gnu: Add Intel MPI Benchmarks.
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15 17:52:44 +01:00
Ludovic Courtès
e68f954eb3
gnu: rdma-core: Update to 26.0.
* gnu/packages/linux.scm (rdma-core): Update to 26.0.
[arguments]: Add "-DRST2MAN_EXECUTABLE=..." to #:configure-flags.
[native-inputs]: Add PYTHON-DOCUTILS.
2019-11-15 17:52:44 +01:00
Ludovic Courtès
2b14c60d38
gnu: rdma-core: Use the "write" ioctl mode.
* gnu/packages/linux.scm (rdma-core)[arguments]: Add "-DIOCTL_MODE=write"
to #:configure-flags.
2019-11-15 17:52:44 +01:00
Ludovic Courtès
eaa52b5baa
gnu: openmpi: Pass explicit "--with-*" configure flags.
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx",
"--with-psm", and "--with-psm2".
2019-11-15 17:52:44 +01:00
Ludovic Courtès
3b09bb191c
gnu: ucx: Do not install static libraries.
* gnu/packages/fabric-management.scm (ucx)[arguments]: Pass
"--disable-static".
2019-11-15 17:52:44 +01:00
Ludovic Courtès
b35f621e45
gnu: ucx: Enable InfiniBand support through Verbs.
Until now, InfiniBand support was missing, as reported by "ucx_info -d"
on a machine with InfiniBand networking.

* gnu/packages/fabric-management.scm (ucx)[arguments]: Build with
"--with-verbs".
2019-11-15 17:52:44 +01:00
Kyle Meyer
f3560c626d
gnu: git-annex: Update to 7.20191114.
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191114.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15 14:48:32 +01:00
Pierre Langlois
bcdf11d6ff
gnu: rtmidi: Update to 4.0.0.
* gnu/packages/audio.scm (rtmidi): Update to 4.0.0.
[source]: Download tarball from upstream URL rather than the powertab github
fork.
[arguments]: Enable tests.  Remove 'build and 'install phases and add a new
'noconfigure phase to prevent the bootstrap script from invoking configure.
[home-page]: Update homepage to upstream URL.
* gnu/packages/music.scm (powertabeditor)[arguments]: Add phase that substitutes
the rtmidi #include directive to find the header.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15 14:29:57 +01:00
John Soo
ae5525c591
gnu: freecad: Update to 0.18.4.
* gnu/packages/engineering.scm (freecad): Update to 0.18.4.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15 13:50:03 +01:00
Efraim Flashner
cda79c7cc9
make-bootstrap: Adjust copied linux headers.
* guix/build/make-bootstrap.scm (copy-linux-headers): Remove header
file 'a.out.h' is no longer part of the linux kernel headers.
2019-11-15 13:00:23 +02:00
Mathieu Othacehe
b02a9523b3
gnu: emacs-flycheck-cpplint: Set cpplint path.
* gnu/packages/emacs-xyz.scm (emacs-flycheck-cpplint)[inputs]: Add cpplint.
[arguments]: Add a set-cpplint-path phase to set the path of cpplint.
2019-11-15 11:04:23 +01:00
Mathieu Othacehe
7e08be71ac
gnu: Add cpplint.
* gnu/packages/cpp.scm (cpplint): New variable.
2019-11-15 10:50:19 +01:00
Tobias Geerinckx-Rice
37d473c5d1
gnu: fluidsynth: Update to 2.0.9.
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.9.
2019-11-14 18:01:41 +01:00
Tobias Geerinckx-Rice
daa03aca15
gnu: perl-type-tiny: Update to 1.006000.
* gnu/packages/perl.scm (perl-type-tiny): Update to 1.006000.
2019-11-14 18:01:40 +01:00
Tobias Geerinckx-Rice
84748e719d
gnu: msitools: Update to 0.100.
* gnu/packages/package-management.scm (msitools): Update to 0.100.
2019-11-14 18:01:40 +01:00
Tobias Geerinckx-Rice
3b27ffec0f
gnu: perl-mail-dkim: Update to 0.58.
* gnu/packages/mail.scm (perl-mail-dkim): Update to 0.58.
2019-11-14 18:01:40 +01:00
Jan Nieuwenhuizen
99b340f5ee
gnu: Add m2-planet.
* gnu/packages/mes.scm (m2-planet): New variable.
2019-11-14 16:41:55 +01:00
Pierre Neidhardt
5a17042e70
gnu: Add emacs-helm-fish-completion.
* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): New variable.
2019-11-14 15:39:56 +01:00
Ricardo Wurmus
4dcf32b56b
gnu: r-gprofiler: Update to 0.7.0.
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.7.0.
2019-11-14 10:14:10 +01:00
Ricardo Wurmus
f40fedd8fd
gnu: r-hexbin: Update to 1.28.0.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.0.
2019-11-14 10:14:10 +01:00
Ricardo Wurmus
d458b2a9e5
gnu: r-r-oo: Update to 1.23.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.23.0.
2019-11-14 10:14:09 +01:00
Ricardo Wurmus
f046f43bb8
gnu: r-glmnet: Update to 3.0.
* gnu/packages/statistics.scm (r-glmnet): Update to 3.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
[propagated-inputs]: Add r-shape.
2019-11-14 10:14:09 +01:00
Ricardo Wurmus
3a3ece336b
gnu: r-dt: Update to 0.10.
* gnu/packages/statistics.scm (r-dt): Update to 0.10.
2019-11-14 10:14:09 +01:00
Ricardo Wurmus
85d44cf6de
gnu: r-rmarkdown: Update to 1.17.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.17.
2019-11-14 10:14:08 +01:00
Ricardo Wurmus
a713371db1
gnu: r-hms: Update to 0.5.2.
* gnu/packages/statistics.scm (r-hms): Update to 0.5.2.
2019-11-14 10:14:08 +01:00
Ricardo Wurmus
2295a17e64
gnu: r-roxygen2: Update to 7.0.0.
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.0.
[propagated-inputs]: Add r-rlang.
2019-11-14 10:14:08 +01:00
Ricardo Wurmus
30301c0993
gnu: r-r6: Update to 2.4.1.
* gnu/packages/statistics.scm (r-r6): Update to 2.4.1.
2019-11-14 10:14:08 +01:00
Ricardo Wurmus
3d2c2a55fd
gnu: r-testthat: Update to 2.3.0.
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.0.
[propagated-inputs]: Add r-ellipsis and r-pkgload.
2019-11-14 10:14:08 +01:00