Commit graph

73369 commits

Author SHA1 Message Date
jgart
db600ee2c1
gnu: python-pytest-timeout: Update to 1.4.2.
* gnu/packages/check.scm (python-pytest-timeout): Update to 1.4.2.
[propagated-inputs]:Add python-pytest-cov.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-26 23:34:05 +03:00
Alexandr Vityazev
b4d132f98e
gnu: emacs-vertico: Add new phase after unpack.
* gnu/packages/emacs-xyz.scm (emacs-vertico)[arguments]<phases>:
After the unpack phase add a move-source-files phase.
2021-08-26 22:02:12 +02:00
André A. Gomes
399e3ee7b7
gnu: emacs-guix: Update to 0.5.2.5-c9aef52.
Fixes <https://bugs.gnu.org/48844>.

* gnu/packages/emacs-xyz.scm (emacs-guix): Update to c9aef52.
  [source]: Use gitlab.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
2021-08-26 21:52:49 +02:00
Sergei Trofimovich
f3b9db9ca1
gnu: ccache: Update to 3.4.
* gnu/packages/ccache.scm: Update to 3.4.
2021-08-26 21:31:12 +02:00
Sergei Trofimovich
d1d9206180
gnu: mc: Update to 4.8.27.
Switched to direct mirror URI to match SSL certificate issuer
(home page does not provide a download link over secure protocols).

While at it added 'release-monitoing-url property to allow
'generic-html updater to fetch latest version from correct location.
Otherwise the only available updater is 'gnu-ftp (which forces downgrade
to ancient 4.6.1 release).

* gnu/packages/mc.scm (mc): Update to 4.8.27. Explicitly set
release-monitoing-url to up to date location.
2021-08-26 21:18:38 +02:00
Nicolas Goaziou
4b51d045a8
gnu: colobot: Update to 0.2.0-alpha.
* gnu/packages/games.scm (colobot): Update to 0.2.0-alpha.
2021-08-26 16:43:33 +02:00
Nicolas Goaziou
6becdbdc9b
gnu: nushell: Update to 0.36.0.
* gnu/packages/shells.scm (nushell): Update to 0.36.0.
(rust-nu-ansi-term-0.36):
(rust-nu-cli-0.36):
(rust-nu-command-0.36):
(rust-nu-completion-0.36):
(rust-nu-data-0.36):
(rust-nu-engine-0.36):
(rust-nu-errors-0.36):
(rust-nu-json-0.36):
(rust-nu-parser-0.36):
(rust-nu-path-0.36):
(rust-nu-plugin-0.36):
(rust-nu-plugin-binaryview-0.36):
(rust-nu-plugin-chart-0.36):
(rust-nu-plugin-fetch-0.36):
(rust-nu-plugin-from-bson-0.36):
(rust-nu-plugin-from-sqlite-0.36):
(rust-nu-plugin-inc-0.36):
(rust-nu-plugin-match-0.36):
(rust-nu-plugin-post-0.36):
(rust-nu-plugin-ps-0.36):
(rust-nu-plugin-query-json-0.36):
(rust-nu-plugin-s3-0.36):
(rust-nu-plugin-selector-0.36):
(rust-nu-plugin-start-0.36):
(rust-nu-plugin-sys-0.36):
(rust-nu-plugin-textview-0.36):
(rust-nu-plugin-to-bson-0.36):
(rust-nu-plugin-to-sqlite-0.36):
(rust-nu-plugin-tree-0.36):
(rust-nu-plugin-xpath-0.36):
(rust-nu-pretty-hex-0.36):
(rust-nu-protocol-0.36):
(rust-nu-source-0.36):
(rust-nu-stream-0.36):
(rust-nu-table-0.36):
(rust-nu-test-support-0.36):
(rust-nu-value-ext-0.36): Update to 0.36.0.
(rust-nu-serde-0.36): New variable.
2021-08-26 14:25:04 +02:00
Nicolas Goaziou
99edce2091
gnu: Add rust-zstd-0.9.
* gnu/packages/crates-io.scm (rust-zstd-0.9): New variable.
(rust-zstd-0.8): Inherit from above.
2021-08-26 14:25:04 +02:00
Nicolas Goaziou
37c0f201c2
gnu: rust-zstd-safe-4: Update to 4.1.1+zstd.1.5.0.
* gnu/packages/crates-io.scm (rust-zstd-safe-4): Update to 4.1.1+zstd.1.5.0.
2021-08-26 14:25:04 +02:00
Nicolas Goaziou
5c5176a1e8
gnu: rust-zstd-sys-1: Update to 1.6.1+zstd.1.5.0.
* gnu/packages/crates-io.scm (rust-zstd-sys-1): Update to 1.6.1+zstd.1.5.0.
2021-08-26 14:25:03 +02:00
Nicolas Goaziou
299c5d212e
gnu: Add rust-bigdecimal-rs-0.2.
* gnu/packages/crates-io.scm (rust-bigdecimal-rs-0.2): New variable.
2021-08-26 14:25:03 +02:00
Nicolas Goaziou
e832c3325f
gnu: Add rust-flatbuffers-2.
* gnu/packages/crates-io.scm (rust-flatbuffers-2): New variable.
(rust-flatbuffers-0.8): Inherit from above.
2021-08-26 14:25:03 +02:00
Nicolas Goaziou
eb9ae642d4
gnu: Add rust-jsonpath-lib-0.3.
* gnu/packages/crates-io.scm (rust-jsonpath-lib-0.3): New variable.
2021-08-26 14:25:02 +02:00
Nicolas Goaziou
82637c1aef
gnu: Add rust-polars-0.15.
* gnu/packages/crates-io.scm (rust-polars-0.15): New variable.
(rust-polars-0.14): Inherit from above.
2021-08-26 14:25:02 +02:00
Nicolas Goaziou
4a8e07e326
gnu: Add rust-polars-lazy-0.15.
* gnu/packages/crates-io.scm (rust-polars-lazy-0.15): New variable.
(rust-polars-lazy-0.14): Inherit from above.
2021-08-26 14:25:02 +02:00
Nicolas Goaziou
734aa60424
gnu: Add rust-polars-io-0.15.
* gnu/packages/crates-io.scm (rust-polars-io-0.15): New variable.
(rust-polars-io-0.14): Inherit from above.
2021-08-26 14:25:01 +02:00
Nicolas Goaziou
84479475f6
gnu: Add rust-polars-arrow-0.15.
* gnu/packages/crates-io.scm (rust-polars-arrow-0.15): New variable.
(rust-polars-arrow-0.14): Inherit from above.
2021-08-26 14:25:01 +02:00
Nicolas Goaziou
4bfd6d9b49
gnu: Add rust-polars-core-0.15.
* gnu/packages/crates-io.scm (rust-polars-core-0.15): New variable.
(rust-polars-core-0.14): Inherit from above.
2021-08-26 14:25:01 +02:00
Nicolas Goaziou
4da42edec5
gnu: Add rust-parquet-5.
* gnu/packages/crates-io.scm (rust-parquet-5): New variable.
(rust-parquet-4): Inherit from above.
2021-08-26 14:25:00 +02:00
Nicolas Goaziou
721a18bc78
gnu: Add rust-arrow-5.
* gnu/packages/crates-io.scm (rust-arrow-5): New variable.
(rust-arrow-4): Inherit from above.
2021-08-26 14:25:00 +02:00
Nicolas Goaziou
671aae1178
gnu: Add rust-rustyline-9.
* gnu/packages/crates-io.scm (rust-rustyline-9): New variable.
(rust-rustyline-8): Inherit from above.
2021-08-26 14:25:00 +02:00
Nicolas Goaziou
ec51a9845d
gnu: Add rust-fd-lock-3.
* gnu/packages/crates-io.scm (rust-fd-lock-3): New variable.
(rust-fd-lock-2): Inherit from above.
2021-08-26 14:24:59 +02:00
Nicolas Goaziou
60f6e97dd9
gnu: Add rust-nix-0.22.
* gnu/packages/crates-io.scm (rust-nix-0.22): New variable.
(rust-nix-0.21): Inherit from above.
2021-08-26 14:24:59 +02:00
Nicolas Goaziou
45ad284090
gnu: rust-libc-0.2: Update to 0.2.101.
* gnu/packages/crates-io.scm (rust-libc-0.2): Update to 0.2.101.
2021-08-26 14:24:59 +02:00
Nicolas Goaziou
513f5e5179
gnu: rust-thiserror-1: Update to 1.0.26.
* gnu/packages/crates-io.scm (rust-thiserror-1): Update to 1.0.26.
2021-08-26 14:24:58 +02:00
Nicolas Goaziou
89dab587d6
gnu: rust-thiserror-impl-1: Update to 1.0.26.
* gnu/packages/crates-io.scm (rust-thiserror-impl-1): Update to 1.0.26.
2021-08-26 14:24:58 +02:00
Ricardo Wurmus
03ed20e87b
gnu: Add r-zoib.
* gnu/packages/cran.scm (r-zoib): New variable.
2021-08-26 11:46:07 +02:00
Ricardo Wurmus
71f3255faa
gnu: Add r-zoltr.
* gnu/packages/cran.scm (r-zoltr): New variable.
2021-08-26 11:46:03 +02:00
Ricardo Wurmus
db438e2dff
gnu: Add r-mockery.
* gnu/packages/cran.scm (r-mockery): New variable.
2021-08-26 11:45:57 +02:00
Ricardo Wurmus
bb2eef3bf1
gnu: Add r-webmockr.
* gnu/packages/cran.scm (r-webmockr): New variable.
2021-08-26 11:45:52 +02:00
Ricardo Wurmus
9c4e106383
gnu: Add r-fauxpas.
* gnu/packages/cran.scm (r-fauxpas): New variable.
2021-08-26 11:45:47 +02:00
Ricardo Wurmus
e13de8715f
gnu: Add r-crul.
* gnu/packages/cran.scm (r-crul): New variable.
2021-08-26 11:45:42 +02:00
Ricardo Wurmus
87682c88c8
gnu: Add r-mmwrweek.
* gnu/packages/cran.scm (r-mmwrweek): New variable.
2021-08-26 11:45:37 +02:00
Ricardo Wurmus
4638c52e32
gnu: Add r-zonator.
* gnu/packages/cran.scm (r-zonator): New variable.
2021-08-26 11:45:29 +02:00
Ricardo Wurmus
3d111f1430
gnu: Add r-zonebuilder.
* gnu/packages/cran.scm (r-zonebuilder): New variable.
2021-08-26 11:45:24 +02:00
Ricardo Wurmus
5e3199e37b
gnu: Add r-zooarch.
* gnu/packages/cran.scm (r-zooarch): New variable.
2021-08-26 11:45:15 +02:00
Ricardo Wurmus
1c8a0dbcaf
gnu: r-dismo: Remove commented input.
* gnu/packages/cran.scm (r-dismo)[inputs]: Remove commented "java" input.
2021-08-26 11:34:26 +02:00
Ricardo Wurmus
1c4b1a1f49
gnu: Add r-zooimage.
* gnu/packages/cran.scm (r-zooimage): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
9d56788e1c
gnu: Add r-mlearning.
* gnu/packages/cran.scm (r-mlearning): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
b28a60c02c
gnu: Add r-filehash.
* gnu/packages/cran.scm (r-filehash): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
738a48adb1
gnu: Add r-zoolog.
* gnu/packages/cran.scm (r-zoolog): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
7986f5cb3d
gnu: Add r-zoom.
* gnu/packages/cran.scm (r-zoom): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
7bc1b5a23d
gnu: Add r-zoomgroupstats.
* gnu/packages/cran.scm (r-zoomgroupstats): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
870fb5dc22
gnu: Add r-paws.
* gnu/packages/cran.scm (r-paws): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
499ffd579e
gnu: Add r-paws-compute.
* gnu/packages/cran.scm (r-paws-compute): New variable.
2021-08-26 11:25:22 +02:00
Ricardo Wurmus
c6849d2ca2
gnu: Add r-paws-storage.
* gnu/packages/cran.scm (r-paws-storage): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
b28cfb83e4
gnu: Add r-paws-database.
* gnu/packages/cran.scm (r-paws-database): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
478a889925
gnu: Add r-paws-networking.
* gnu/packages/cran.scm (r-paws-networking): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
16cc95c4e9
gnu: Add r-paws-management.
* gnu/packages/cran.scm (r-paws-management): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
322290ba13
gnu: Add r-paws-machine-learning.
* gnu/packages/cran.scm (r-paws-machine-learning): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
c7b913a535
gnu: Add r-paws-analytics.
* gnu/packages/cran.scm (r-paws-analytics): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
10139557f0
gnu: Add r-paws-security-identity.
* gnu/packages/cran.scm (r-paws-security-identity): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
6850d222e6
gnu: Add r-paws-application-integration.
* gnu/packages/cran.scm (r-paws-application-integration): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
a30b1ff444
gnu: Add r-paws-cost-management.
* gnu/packages/cran.scm (r-paws-cost-management): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
e1f7b3e8f9
gnu: Add r-paws-customer-engagement.
* gnu/packages/cran.scm (r-paws-customer-engagement): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
add144a0c4
gnu: Add r-paws-common.
* gnu/packages/cran.scm (r-paws-common): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
26cc1eafe7
gnu: Add r-zoon.
* gnu/packages/cran.scm (r-zoon): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
8b00e70558
gnu: Add r-dismo.
* gnu/packages/cran.scm (r-dismo): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
f8c88560db
gnu: Add r-rfigshare.
* gnu/packages/cran.scm (r-rfigshare): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
2f00425b4e
gnu: Add r-zra.
* gnu/packages/cran.scm (r-zra): New variable.
2021-08-26 11:25:21 +02:00
Ricardo Wurmus
fac893fa7f
gnu: Add r-zscorer.
* gnu/packages/cran.scm (r-zscorer): New variable.
2021-08-26 11:25:20 +02:00
Ricardo Wurmus
9f120e9150
gnu: Add r-ztpln.
* gnu/packages/cran.scm (r-ztpln): New variable.
2021-08-26 11:25:20 +02:00
Ricardo Wurmus
ed531c6cd9
gnu: Add r-distributionutils.
* gnu/packages/cran.scm (r-distributionutils): New variable.
2021-08-26 11:25:20 +02:00
Ricardo Wurmus
f4cb9563a3
gnu: Add r-ztree.
* gnu/packages/cran.scm (r-ztree): New variable.
2021-08-26 11:25:20 +02:00
Ricardo Wurmus
e5f360aa97
gnu: Add r-zzlite.
* gnu/packages/cran.scm (r-zzlite): New variable.
2021-08-26 11:25:20 +02:00
Nicolas Goaziou
c410001d21
gnu: wireshark: Update to 3.4.8.
* gnu/packages/networking.scm (wireshark): Update to 3.4.8.
2021-08-26 10:36:02 +02:00
Nicolas Goaziou
9483d10494
gnu: emacs-orgit: Update to 1.7.1.
* gnu/packages/emacs-xyz.scm (emacs-orgit): Update to 1.7.1.
2021-08-26 10:30:09 +02:00
Nicolas Goaziou
7ef00db933
gnu: emacs-moody: Update to 0.6.0.
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.6.0.
2021-08-26 10:28:55 +02:00
Nicolas Goaziou
71521c341f
gnu: emacs-keycast: Update to 1.1.1.
* gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.1.1.
2021-08-26 10:27:50 +02:00
Nicolas Goaziou
f0b0d67341
gnu: emacs-htmlize: Update to 1.56.
* gnu/packages/emacs-xyz.scm (emacs-htmlize): Update to 1.56.
2021-08-26 10:26:42 +02:00
Nicolas Goaziou
e645194d80
gnu: emacs-envrc: Update to 0.4.
* gnu/packages/emacs-xyz.scm (emacs-envrc): Update to 0.4.
[propagated-inputs]: Add emacs-inheritenv.
2021-08-26 10:25:28 +02:00
Nicolas Goaziou
29b3c0898f
gnu: Add emacs-inheritenv.
* gnu/packages/emacs-xyz.scm (emacs-inheritenv): New variable.
2021-08-26 10:25:15 +02:00
Nicolas Goaziou
20ca345899
gnu: emacs-ebdb: Update to 0.8.2.
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.2.
2021-08-26 10:13:45 +02:00
Andrew Whatson
26878cb3d8
gnu: osinfo-db: Update to 20210809.
Fixes failures when attempting to download some images in gnome-boxes.

* gnu/packages/virtualization.scm (osinfo-db): Update to 20210809.
2021-08-25 22:00:08 +02:00
Simon South
49339d2e68
gnu: knot-resolver: Update to 5.4.1.
* gnu/packages/dns.scm (knot-resolver): Update to 5.4.1.
2021-08-25 21:54:47 +02:00
Marius Bakke
08660f7c88
gnu: ungoogled-chromium: Update to 92.0.4515.159-0.8164c91.
* gnu/packages/chromium.scm (%chromium-version): Set to 92.0.4515.159.
(%ungoogled-revision): Set to 92.0.4515.159-1-8-g8164c91.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-08-25 21:10:23 +02:00
Ricardo Wurmus
2f16659b40
gnu: Add r-ballgown.
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
2021-08-25 12:30:33 +02:00
Ricardo Wurmus
f66759e0b2
gnu: Add ivar.
* gnu/packages/bioinformatics.scm (ivar): New variable.
2021-08-25 11:22:02 +02:00
Leo Famulari
ae3e6ba506
gnu: atop: Update to 2.6.0.
* gnu/packages/admin.scm (atop): Update to 2.6.0.
2021-07-27 12:34:57 -04:00
Efraim Flashner
5422920b9e
gnu: openssl: Update replacement to 1.1.1l [security fixes].
* gnu/packages/tls.scm (openssl)[replacement]: Replace with 1.1.1l.
(openssl-1.1.1k): Remove variable.
(openssl-1.1.1l): Add variable.
2021-08-24 22:36:39 +03:00
Ricardo Wurmus
68b22a8541
gnu: r-delayedmatrixstats: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
26d6db11f0
gnu: r-sparsematrixstats: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
b2316605e2
gnu: r-scuttle: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
2897ad3178
gnu: r-beachmat: Update to 2.8.1.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
da7e7c9de8
gnu: r-biocset: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
9ff9a4756d
gnu: r-universalmotif: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
0022f40462
gnu: r-clusterprofiler: Update to 4.0.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
5543456ae9
gnu: r-dose: Update to 3.18.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
1c23b99a3c
gnu: r-batchelor: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
82d6774757
gnu: r-ggtree: Update to 3.0.3.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
e4ad91eb3e
gnu: r-treeio: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
917f0def66
gnu: r-matrixgenerics: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
3ef4c12a49
gnu: r-chippeakanno: Update to 3.26.3.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
33fedd371a
gnu: r-diffbind: Update to 3.2.5.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
514454cc8f
gnu: r-structuralvariantannotation: Update to 1.8.2.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2.
[propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and
r-summarizedexperiment.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
1920e567a7
gnu: r-rtracklayer: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
495c50c68d
gnu: r-limma: Update to 3.48.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
3277c4e749
gnu: r-genomicfeatures: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
8df84bedf7
gnu: r-ensembldb: Update to 2.16.4.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
e46cf457bb
gnu: r-biostrings: Update to 2.60.2.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
2021-08-24 12:28:12 +02:00