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1136 commits

Author SHA1 Message Date
Ludovic Courtès
a48a1071a6
gnu: libgit2: Patch use-after-free. 
* gnu/packages/patches/libgit2-use-after-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (libgit2)[inputs]: Add it.
[arguments] <#:phases>: Add 'apply-patch' phase.
 2017-03-28 00:32:37 +02:00
Kei Kebreau
359e9c4215
gnu: chicken: Update to 4.12.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.12.0.
 2017-03-22 15:31:17 -04:00
Marius Bakke
38190ea5ef
gnu: vim: Update to 8.0.0494. 
* gnu/packages/patches/vim-CVE-2017-5953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0494.
[source]: Remove patch.
(vim-full)[arguments]: Add two phases to drop tests and start xorg.
[native-inputs]: Add XORG-SERVER.
 2017-03-20 23:35:39 +01:00
Tobias Geerinckx-Rice
4fd95d9170
gnu: ngircd: Update to 24. 
* gnu/packages/messaging.scm (ngircd): Update to 24.
[source]: Remove upstreamed DNS lookup patch.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-20 22:44:06 +01:00
Mark H Weaver
512fc6db7b
gnu: libevent@2.0: Add fix from upstream. 
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.

* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
 2017-03-19 15:54:58 -04:00
Marius Bakke
2a047d59e0
gnu: libwebp: Update to 0.6.0. 
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-17 20:41:15 +01:00
Marius Bakke
cbef2796ed
gnu: ninja: Update to 1.7.2. 
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-17 20:41:15 +01:00
Leo Famulari
49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}. 
* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
 2017-03-16 19:40:08 -04:00
Leo Famulari
1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386. 
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
 2017-03-16 19:39:55 -04:00
Clément Lassieur
2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19. 
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2017-03-16 19:58:43 +01:00
Leo Famulari
c84c8f66f5
gnu: wget: Fix CVE-2017-6508. 
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wget.scm (wget)[source]: Use it.
 2017-03-10 22:36:58 -05:00
Ben J. Woodcroft
79f09fa239
gnu: hmmer: Build reproducibly. 
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
 2017-03-10 20:31:30 +10:00
Marius Bakke
ce79279d34
gnu: python-pandas: Really fix build on 32bit. 
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion
with same-named test.
 2017-03-09 16:39:08 +01:00
Mark H Weaver
7b1866d783
gnu: python-fake-factory: Add back missing patch file. 
This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-09 06:08:18 -05:00
Marius Bakke
b03ee02f0d
gnu: python-pandas: Fix build on 32-bit. 
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
 2017-03-08 18:04:23 +01:00
Marius Bakke
ce7911ddae
gnu: Add python-faker. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
 2017-03-08 18:00:43 +01:00
Marius Bakke
9bb766e70d
gnu: pcre2: Update to 10.23. 
* gnu/packages/pcre.scm (pcre2): Update to 10.23.
[source]: Remove patch.
[arguments]: Add phase to substitute /bin/echo reference.
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-07 23:21:22 +01:00
Leo Famulari
f11275c9e5
gnu: gnupg: Update to 2.1.19. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19.
[arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase.
Add '--enable-gnupg-builddir-envvar' to #:configure-flags.
[source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-07 16:37:17 -05:00
Marius Bakke
6cb7477699
gnu: python-statsmodels: Update to 0.8.0. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
 2017-03-06 23:24:11 +01:00
Thomas Danckaert
4535a93adb
gnu: python-matplotlib: Update to 2.0.0. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:22:22 +01:00
Marius Bakke
550bd98b41
gnu: Add python2-subprocess32. 
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-06 23:21:34 +01:00
Leo Famulari
e20784e65e
gnu: texlive: Fix CVE-2016-10243. 
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
 2017-03-06 16:47:37 -05:00
rennes
40c611a41d
gnu: wxwidgets: Fix for Filezilla client. 
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-04 23:15:01 -05:00
Leo Famulari
c35745edc4
gnu: kio: Fix CVE-2017-6410. 
* gnu/packages/patches/kio-CVE-2017-6410.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kio)[source]: Use it.
 2017-03-04 18:35:17 -05:00
Andreas Enge
21abf092a4
gnu: arb: Update to 2.10.0. 
* gnu/packages/algebra.scm (arb): Update to 2.10.0.
* gnu/packages/patches/arb-ldconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2017-03-03 18:33:19 +01:00
Marius Bakke
3b175eab84
gnu: nss, nss-certs: Update to 3.29.2. 
* gnu/packages/certs.scm (nss-certs): Update to 3.29.2.
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.2.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to context changes.
 2017-03-03 17:26:24 +01:00
Marius Bakke
3f98071ac5
Merge branch 'python-tests' 2017-03-03 16:55:43 +01:00
Alex Vong
92ae98e2a0
gnu: mupdf: Fix CVE-2017-{5896,5991}. 
* gnu/packages/patches/mupdf-CVE-2017-5896.patch,
gnu/packages/patches/mupdf-CVE-2017-5991.patch: New files.
* gnu/packages/pdf.scm (mupdf/fixed)[source]: Add patches.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-03 04:47:52 -05:00
John Darrington
479c4273e6
gnu: Add jacal. 
* gnu/packages/maths.scm (jacal): New variable.
* gnu/packages/patches/jacal-fix-texinfo.patch: New file.
 2017-03-02 18:17:26 +01:00
Leo Famulari
d8bcf08088
gnu: vdirsyncer: Update to 0.15.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.15.0.
[source]: Remove obsolete patch 'vdirsyncer-test-suite-slow-machines.patch'.
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-01 22:33:11 -05:00
Efraim Flashner
13e4a6c863
gnu: screen: Update to 4.5.1. 
* gnu/packages/screen.scm (screen): Update to 4.5.1.
[source]: Remove patch.
* gnu/packages/patches/screen-CVE-2017-5618.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-02-28 21:01:26 +02:00
Marius Bakke
8779987bba
Merge branch 'master' into python-tests 2017-02-27 12:42:22 +01:00
Leo Famulari
1d8e727357
gnu: gst-plugins-base: Update to 1.10.4. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.4.
[source]: Remove obsolete patch 'gst-plugins-base-fix-test-on-32bit.patch'
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-02-27 04:04:51 -05:00
Marius Bakke
b01a89854b
gnu: Remove unused patch. 
This is a followup to 6f9d5b2e8c.

* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-02-26 21:41:21 +01:00
Leo Famulari
ffa771d2b4
gnu: vim: Use upstream fix for CVE-2017-5953. 
* gnu/packages/patches/vim-CVE-2017-5953.patch: Adjust to match upstream changes.
 2017-02-26 12:04:16 -05:00
Ricardo Wurmus
1885bb0c08
gnu: python-dendropy: Fix failing tests. 
* gnu/packages/patches/python-dendropy-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Add patch.
 2017-02-24 23:44:31 +01:00
Marius Bakke
42945fb58c
gnu: python-fake-factory: Fix build on 32bit. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
 2017-02-24 18:55:29 +01:00
Leo Famulari
1d311009fe
gnu: util-linux: Fix CVE-2017-2616. 
* gnu/packages/patches/util-linux-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
 2017-02-23 15:01:54 -05:00
Leo Famulari
1c851cbe0c
gnu: shadow: Fix CVE-2017-2616. 
* gnu/packages/patches/shadow-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shadow): Use it.
 2017-02-23 14:59:50 -05:00
Leo Famulari
bd1450f1e4
gnu: ntfs-3g: Fix patch for CVE-2017-0358. 
This is a followup to commit 1a82ba660e.

* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Make patch apply.
 2017-02-18 14:20:38 -05:00
Danny Milosavljevic
a1e3ed6e8b
gnu: python-pbr: Support python-sphinx>=1.2.1. 
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: New file.
* gnu/packages/python.scm (python-pbr-minimal): Use the new patch file.
 2017-02-18 16:43:37 +01:00
Leo Famulari
945b6721eb
gnu: vdirsyncer: Don't fail the test suite when the build machine is slow. 
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dav.scm (vdirsyncer)[source]: Use it.
 2017-02-18 10:24:03 -05:00
Leo Famulari
1ae04e3511
gnu: vim: Fix CVE-2017-5953. 
* gnu/packages/patches/vim-CVE-2017-5953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/vim.scm (vim)[source]: Use it.
 2017-02-14 14:24:04 -05:00
Eric Bavier
4fc282b32a
gnu: netsurf: Enable tests. 
* gnu/packages/patches/netsurf-longer-test-timeout.patch,
gnu/packages/patches/netsurf-y2038-tests.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/web.scm (netsurf)[source]: Use them.
[native-inputs]: Add libidn, check.
[inputs]: Add miscfiles.
[arguments]: Remove #:tests?, add #:test-target.  Add 'patch-check phase.
 2017-02-13 22:28:33 -06:00
Eric Bavier
710806b57b
gnu: netsurf: Use unbundled source. 
* gnu/packages/patches/netsurf-system-utf8proc.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (netsurf)[source]: Use it.  Change to unbundled source
tarball.
[native-inputs]: Add netsurf-buildsystem, nsgenbind.  Remove flex, bison.
[inputs]: Add utf8proc, libcss, libdom, libnsbmp, libnsgif, libnspsl,
libnsutils, libsvgtiny.  Remove expat, gperf.
[arguments]: Adjust #:make-flags for netsurf-buildsystem.  Delete configure
phase.  Adjust source directories.
 2017-02-13 22:28:33 -06:00
Eric Bavier
43bfbf1370
gnu: Add hubbub. 
* gnu/packages/web.scm (hubbub): New variable.
 2017-02-13 22:28:25 -06:00
Eric Bavier
57c211cd71
gnu: netsurf: Upgrade to 3.6. 
* gnu/packages/web.scm (netsurf): Upgrade to 3.6.
[source]: 'https' -> 'http'.  Remove modules, snippet, and patches.
[home-page]: 'https' -> 'http'.
[arguments]: Adjust source directories.
* gnu/packages/patches/netsurf-about.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-02-13 20:59:19 -06:00
Marius Bakke
bb6043fe9f
gnu: python-pygit2: Skip tests requiring network access. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2)[source](patches):
New field.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-02-14 00:04:59 +01:00
Marius Bakke
424b1ae769
Merge branch 'master' into python-tests 2017-02-13 22:35:05 +01:00
Leo Famulari
d6065945ff
gnu: screen: Fix CVE-2017-5618. 
* gnu/packages/patches/screen-CVE-2017-5618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/screen.scm (screen)[source]: Use it.
 2017-02-12 10:26:02 -05:00