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Sharlatan Hellseher
888942a155
gnu: python-fitsio: Update to 1.1.8. 
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.1.8.
  [arguments]{phases}: skip-bzip2-test remove redundant phase as cfitsio
  built with bzip2 support.
  [inputs]: Add curl-minimal.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Sharlatan Hellseher
5534a69223
gnu: cfitsio: Build with bzip2 support. 
* gnu/packages/astronomy.scm (cfitsio):
  [arguments](configure-flags): Add bzip2 option.
  [inputs]: Add bzip2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Sharlatan Hellseher
96df67e068
gnu: cfitsio: Update to 4.2.0. 
Fix build on aarch64-linux as reported in:
- https://issues.guix.gnu.org/59323
- https://github.com/rwesson/ALFA/issues/29

The latest version passed build on aarch64-linux system with curl and
gfortran enabled. wcslib@7.5 passed build with curl enabled (was marked
as failing in cements).

* gnu/packages/astronomy.scm (cfitsio): Update to 4.2.0.
  [arguments]: Use Gexp, enable tests.
  [arguments](phases): Delete check and add post-install-check phases.
  [native-inputs]: Add gfortran.
  [inputs]: Add curl, zlib.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-06 23:46:31 +01:00
Ludovic Courtès
efb0f8950f
doc: cookbook: Remove 404 link to mitpress.mit.edu. 
* doc/guix-cookbook.texi (A Scheme Crash Course): Remove 404 link to
mitpress.mit.edu.
 2023-01-06 23:46:31 +01:00
Arun Isaac
38086021b8
gnu: guile-email: Update to 0.3.0. 
* gnu/packages/guile-xyz.scm (guile-email): Update to 0.3.0.
[native-inputs]: Remove pkg-config and lzip. Add texinfo.
[arguments]: Remove GUILE_AUTO_COMPILE=0 make-flag. Add prefix
make-flag. Delete configure phase.
(guile2.2-email)[arguments]: Add guile_effective_version=2.2 make-flag.
* gnu/packages/patches/guile-email-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
 2023-01-06 19:57:25 +00:00
David Thompson
22ffa5e00a
gnu: Update guile-syntax-highlight to 0.2.0. 
* gnu/packages/guile-xyz.scm (guile-syntax-highlight): Update to 0.2.0.
 2023-01-06 10:39:19 -05:00
Ricardo Wurmus
1dd8359fa2
gnu: bbmap: Update to 39.01. 
* gnu/packages/bioinformatics.scm (bbmap): Update to 39.01.
 2023-01-06 15:12:07 +01:00
Ricardo Wurmus
f72dc615ab
gnu: bbmap: Use gexp. 
* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Use gexp.
 2023-01-06 15:11:48 +01:00
Ricardo Wurmus
04ea0e7de4
gnu: nanopolish: Drop input labels. 
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Drop labels.
 2023-01-06 15:01:05 +01:00
Ricardo Wurmus
24e5dbb57a
gnu: nanopolish: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (nanopolish): Update to 0.14.0.
[source]: Update snippet.
[arguments]: Use gexp; use cc-for-target; drop #T from build phases.
[inputs]: Add minimap2.
[native-inputs]: Add cmake-minimal.
 2023-01-06 14:51:55 +01:00
Ricardo Wurmus
8ace894681
gnu: filtlong: Use Python 3. 
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Replace python-2 with
python-wrapper.
 2023-01-06 14:06:13 +01:00
Ricardo Wurmus
067c8a7445
gnu: filtlong: Use gexp. 
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Use gexp.
 2023-01-06 14:05:58 +01:00
Ricardo Wurmus
0070e52ade
gnu: filtlong: Drop input labels. 
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Drop labels.
 2023-01-06 13:59:04 +01:00
Ricardo Wurmus
f5ffcd31c2
gnu: filtlong: Remove trailing #T from build phases. 
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Remove trailing #T.
 2023-01-06 13:58:05 +01:00
Ricardo Wurmus
e20ca244db
gnu: ngless: Use gexp. 
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Use gexp.
 2023-01-06 13:56:34 +01:00
Ricardo Wurmus
648c370f33
gnu: ngless: Remove trailing #T from build phases. 
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Remove trailing #T.
 2023-01-06 13:45:06 +01:00
Ricardo Wurmus
ba35d6ba12
gnu: Add guile-newra. 
* gnu/packages/guile-xyz.scm (guile-newra): New variable.
 2023-01-06 13:13:32 +01:00
Ricardo Wurmus
a768b0433e
gnu: Add psascan. 
* gnu/packages/cpp.scm (psascan): New variable.
 2023-01-06 12:28:15 +01:00
Leo Famulari
8be0a97a81
maint: Add missing modules to the kernel manifest. 
* etc/kernels-manifest.scm: Add missing modules.
 2023-01-06 00:16:06 -05:00
Maxim Cournoyer
4c8149a5f6
gnu: ruby-asciidoctor: Install man page. 
* gnu/packages/ruby.scm (ruby-asciidoctor)
[phases] {install-man-page}: New phase.
 2023-01-05 22:49:20 -05:00
Maxim Cournoyer
ec47da8f49
gnu: ruby-asciidoctor: Update to 2.0.18. 
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 2.0.18.
[native-inputs]: Sort inputs.  Add ruby-open-uri-cached.
[phases]: Delete trailing #t.
[description]: Remove mention of Docbook 4.5, no longer supported.
 2023-01-05 22:37:00 -05:00
Maxim Cournoyer
c2501fa8fc
gnu: anystyle: Update to 1.3.2. 
* gnu/packages/ruby.scm (anystyle): Update to 1.3.2.
[source]: Adjust URL.
 2023-01-05 22:37:00 -05:00
Maxim Cournoyer
83e6953021
gnu: ruby-unicode-scripts: Update to 1.8.0. 
* gnu/packages/ruby.scm (ruby-unicode-scripts): Update to 1.8.0.  Adjust
indentation.
 2023-01-05 22:36:09 -05:00
Maxim Cournoyer
339382abd7
gnu: ruby-minitest: Update to 5.17.0. 
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.17.0.
(ruby-minitest-5.14): New variable.
(ruby-minitest-4): Delete trailing #t.
(ruby-byebug): Delete trailing #t.
[native-inputs]: Replace ruby-minitest with ruby-minitest-5.14.
 2023-01-05 21:52:52 -05:00
Maxim Cournoyer
c39b0461d4
gnu: ath9k-htc-firmware: Fix deprecation warnings. 
* gnu/packages/firmware.scm (ath9k-htc-firmware): Invoke cross-binutils using
keyword arguments.
 2023-01-05 21:49:25 -05:00
Brian Cully
6f8a03fad3
gnu: zfs: Update to 2.1.7. 
* gnu/packages/file-systems.scm (zfs): Update to 2.1.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:13:14 +01:00
Parnikkapore
22ce05b24d
gnu: flightgear: Update to 2020.3.17. 
* gnu/packages/games (flightgear): Update to 2020.3.17.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:11:31 +01:00
Peter Polidoro
71ca992751
gnu: kicad: Update to 6.0.10. 
* gnu/packages/engineering.scm (kicad): Update to 6.0.10.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:09:02 +01:00
Tor-björn Claesson
1fa8775505
gnu: Add charls. 
* gnu/packages/image-processing.scm (charls): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:05:41 +01:00
raingloom
c7158acfba
gnu: gpodder: Update to 3.11.0. 
* gnu/packages/gpodder.scm (gpodder): Update to 3.11.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:04:16 +01:00
Ivan Vilata-i-Balaguer
c9b383fb38
doc: Introduce using swap space for hibernation, with examples. 
* doc/guix.texi (Swap Space): Add a concise introduction to hibernation and
specifying a swap space to the kernel to make resume work.  Mention space
requirements and the need of an offset for swap files.  Include a trivial
example on how to set up a mapped swap volume for hibernation and another one
for a swap file, including how to compute the file offset.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:02:45 +01:00
florhizome
c10164aee7
gnu: Add yaru-theme 
* gnu/packages/gnome-xyz (yaru-theme): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 23:02:42 +01:00
Maya Tomasek
c015eb2a0a
gnu: Add zls. 
* gnu/packages/zig-xyz.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 22:37:45 +01:00
Nicolas Graves
8b3d0b1849
gnu: Add emacs-ibrowse. 
* gnu/packages/emacs-xyz.scm (emacs-ibrowse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-05 22:18:40 +01:00
Ludovic Courtès
e7da6dd6d6
home: shells: Do not escape backslashes in single-quoted strings. 
This is a followup to 73684dc90e.

* gnu/home/services.scm (environment-variable-shell-definitions)
[shell-single-quote]: Remove #\\ from the escape list.
 2023-01-05 15:36:29 +01:00
Ludovic Courtès
80902fc210
gnu: guile-avahi: Fix cross-compilation. 
Previously ./configure would fail because 'guile.m4' wouldn't be picked
up by 'autoreconf' when generating it.

* gnu/packages/guile-xyz.scm (guile-avahi)[native-inputs]: Add GUILE-3.0.
 2023-01-05 15:16:17 +01:00
Ludovic Courtès
b5e3701f1a
environment: Avoid false positive on 'PS1' check. 
* guix/scripts/environment.scm (validate-child-shell-environment): Do
not warn when 'PS1' refers to 'GUIX_ENVIRONMENT'.
 2023-01-05 15:01:29 +01:00
Ludovic Courtès
632e2f7ce1
environment: Simplify 'PS1' suggestion on '--check'. 
* guix/scripts/environment.scm (validate-child-shell-environment): In
'PS1' suggestion, remove 'export' and avoid 'if'.
 2023-01-05 15:01:29 +01:00
Ludovic Courtès
086df6ef21
system: Define default 'PS1' in /etc/bashrc rather than ~/.bashrc. 
Users can override 'PS1' in ~/.bashrc if they wish.

Previously, on Guix Home, the "default" 'PS1' would be set in ~/.bashrc
when 'home-bash-configuration-guix-defaults?' is true, preventing users
from overriding it via the 'environment-variables' field of
'home-bash-extension'.

* gnu/system/shadow.scm (%default-bashrc): Remove 'PS1' setting.
* gnu/system.scm (operating-system-etc-service): Define PS1 in
/etc/bashrc.
* gnu/home/services/shells.scm (add-bash-configuration): When
'home-bash-configuration-guix-defaults?' is true, add a default 'PS1' to
~/.bash_profile.
 2023-01-05 15:00:27 +01:00
Ludovic Courtès
2127e56bd8
system, home: Factorize default '.bashrc'. 
* gnu/system/shadow.scm (%default-bashrc): New variable.  Source
/etc/bashrc only if it exists.
(default-skeletons): Use it.
* gnu/home/services/shells.scm (guix-bashrc): Remove.
(add-bash-configuration): Refer to '%default-bashrc' instead.
 2023-01-05 14:21:19 +01:00
Ludovic Courtès
73684dc90e
home: services: environment-variables: Add support for literal strings. 
* gnu/home/services.scm (<literal-string>): New record type.
(environment-variable-shell-definitions): Split 'shell-quote' into
'quote-string' and 'shell-double-quote'.  Add 'shell-single-quote'.
Add clause for 'literal-string' records.
* tests/guix-home.sh: Test it.
* doc/guix.texi (Essential Home Services): Document it.
 2023-01-05 14:20:23 +01:00
Ludovic Courtès
2c757e8fb4
home: '--version' really says "guix home". 
* guix/scripts/home.scm (%options): Fix argument to 'show-version-and-exit'.
 2023-01-05 13:12:24 +01:00
Julien Lepiller
dc7eb6f07a
nls: Update translations. 
* po/guix/ka.po: New file.
* po/guix/LINGUAS: Add it.
* po/packages/uk.po: New file.
* po/packages/LINGUAS: Add it.
 2023-01-05 08:14:55 +01:00
Ricardo Wurmus
658c09333d
gnu: kodi/wayland: Fix syntax error. 
This is a follow-up to commit dbd9305a56.
Fixes the cuirass evaluation problems reported and investigated by Leo
Famulari.

* gnu/packages/kodi.scm (kodi/wayland)[inputs]: Do not wrap arguments to
"prepend" in "list".
 2023-01-04 21:40:46 +01:00
Ricardo Wurmus
5f83dd03a2
gnu: kodi/wayland: Do not use package/inherit. 
* gnu/packages/kodi.scm (kodi/wayland): Use regular inheritance.
 2023-01-04 21:40:20 +01:00
Ricardo Wurmus
ec5b9fe27e
gnu: bamtools: Build shared libraries. 
* gnu/packages/bioinformatics.scm (bamtools)[arguments]: Build shared
libraries instead of static libs.
 2023-01-04 19:49:59 +01:00
Leo Famulari
c2c93abd18
gnu: zlib: Update to 1.2.12 [fixes CVE-2018-25032]. 
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-25032
https://seclists.org/oss-sec/2022/q1/191

* gnu/packages/compression.scm (zlib)[replacement]: New field.
(zlib-1.2.12): New variable.
 2023-01-04 12:54:39 -05:00
Ricardo Wurmus
5fd9d3ba82
gnu: Add sugar. 
* gnu/packages/sugar.scm (sugar): New variable.
 2023-01-04 17:16:48 +01:00
Ricardo Wurmus
2ba9fbd32e
gnu: sugar-toolkit-gtk3: Add missing inputs. 
* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[propagated-inputs]: Add
python-pycairo and python-dateutil.
 2023-01-04 17:14:59 +01:00
Ricardo Wurmus
7bd9994384
gnu: Add python-gwebsockets. 
* gnu/packages/python-web.scm (python-gwebsockets): New variable.
 2023-01-04 17:14:33 +01:00