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Author SHA1 Message Date
Ricardo Wurmus
79c2b32337
gnu: r-with-tests: Update to 4.4.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.4.0.

Change-Id: If77c95867cc16141c397e48c899a9ade3e89876d
 2024-05-08 12:53:14 +02:00
Artyom V. Poptsov
2bea3f2562
gnu: kubo: Unbundle go-cidutil, go-log and go-ipfs-util. 
* gnu/packages/ipfs.scm (kubo) [source]: Delete "go-cidutil", "go-log",
  "go-ipfs-util" from bundled packages.
  [inputs]: Add go-github-com-ipfs-go-cidutil, go-github-com-ipfs-go-log,
  go-github-com-ipfs-go-log-v2, and go-github-com-ipfs-go-ipfs-util.

Change-Id: I3e49deb9572c6ac471210a392a52117fd0b9ce1a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-08 00:07:21 +01:00
Artyom V. Poptsov
231ffaf1ac
gnu: Add go-github-com-ipfs-go-cidutil. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-cidutil): New variable.

Change-Id: I6077fc00d22b541a959a6623c8666c35288ca105
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-08 00:05:05 +01:00
Artyom V. Poptsov
6f60f90c15
gnu: Add go-github-com-ipfs-go-log. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log): New variable.

Change-Id: I5b5b1d594b5458a7ca156346c6a6dc3c8d5bd69d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-08 00:05:05 +01:00
Artyom V. Poptsov
58cc52f2dc
gnu: Add go-github-com-ipfs-go-log-v2. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log-v2): New variable.

Change-Id: Id6d85bfa883670345420c21937681ae2844f6263
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-08 00:03:02 +01:00
Artyom V. Poptsov
8cb146a3e6
gnu: Add go-github-com-ipfs-go-detect-race. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-detect-race): New variable.

Change-Id: Ic65c12a717a50c4309bc89d29d158a43fbc0c81a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-07 23:51:25 +01:00
Artyom V. Poptsov
f669a24a95
gnu: Add go-github-com-ipfs-go-ipfs-util. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-util): New variable.

Change-Id: Ic496282dc62b7c0d5bd9017aff6a3818b2661309
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-07 23:51:16 +01:00
Sharlatan Hellseher
2795d0f3e7
gnu: kubo: Unbundle go-bazil-org-fuse. 
* gnu/packages/ipfs.scm (kubo) [source]: Remove vendor/bazil.org.
[inputs]: Add go-bazil-org-fuse.

Change-Id: Ie55e609c15a6eaca7ec32521a55620bf674af240
 2024-05-07 23:18:48 +01:00
Sharlatan Hellseher
1f6c4f226d
gnu: Add go-bazil-org-fuse. 
* gnu/packages/golang-xyz.scm (go-bazil-org-fuse): New variable.

Change-Id: I933d90dca50110f53831febc81d587c14973934f
 2024-05-07 23:18:48 +01:00
Sharlatan Hellseher
330a133b85
gnu: go-git-sr-ht-emersion-go-scfg: Move to golang-xyz. 
* gnu/packages/golang.scm: (go-git-sr-ht-emersion-go-scfg): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here

Change-Id: I75cc680543313e41abc86e71d48a9be9e9ce694a
 2024-05-07 23:18:48 +01:00
Sharlatan Hellseher
74b2a9d5a4
gnu: go-git-sr-ht-emersion-gqlclient: Move to golang-web. 
* gnu/packages/golang.scm (go-git-sr-ht-emersion-gqlclient): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.

Change-Id: I2b07dc198f6710680da0430e5f302893060e37b8
 2024-05-07 23:18:47 +01:00
Sharlatan Hellseher
072b06f2f3
gnu: go-git-sr-ht-sircmpwn-getopt: Move to golang-xyz. 
* gnu/packages/golang.scm (go-git-sr-ht-sircmpwn-getopt): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here.

Change-Id: Ic53ec6828f7389326191b659dd16b623e6d1af43
 2024-05-07 23:18:47 +01:00
Sharlatan Hellseher
9716914d4e
gnu: web: Remove syncthing module from used modules. 
There is no more mudule from syncthing which needs to be imported
anymore.

* gnu/packages/web.scm: Remove (gnu packages syncthing) module.

Change-Id: I688e72009e2daa5e75eaeaaeff9026ca888b266b
 2024-05-07 23:17:46 +01:00
Sharlatan Hellseher
fb44cd89df
gnu: go-github-com-nbrownus-go-metrics-prometheus: Disable tests. 
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus):
Disable all tests.

Change-Id: I7f340fd1e58edc0203068c762a1bbc798003a84b
 2024-05-07 21:33:45 +01:00
Sharlatan Hellseher
aa1090713a
gnu: tmsu: Enable test suite. 
* gnu/packages/file-systems.scm (tmsu): Fail over to the project's
Makefile targets.
[arguments]: <#:go>: Use go-1.21.
<#:phases>: Add 'adjust-makefile' phase. Use custom 'build, 'check and
'install phases.

Change-Id: Ice920f2196123f1a1f1561879ab919bc0d4e8512
 2024-05-07 21:33:44 +01:00
Sharlatan Hellseher
c7bd735bc4
gnu: sqls: Use go-1.21. 
Merge all inputs into native-inputs since the output result of the
package is an executable that does not require sources from Golang
modules to be available after installation.

* gnu/packages/databases.scm (sqls):
[arguments]: <#:go>: Use go-1.21.
[inputs]: Remove go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
[native-inputs]: Add go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.

Change-Id: I9312a483dfa954b5f0ad4cfac04b5153570bf571
 2024-05-07 21:33:44 +01:00
Sharlatan Hellseher
e582f27a53
gnu: Add go-github-com-msteinert-pam-v2. 
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam-v2): New variable.

Change-Id: I7dfcb72703722f894eb52c603f02e64e7350f53a
 2024-05-07 21:33:44 +01:00
Jesse Eisses
243ff41195
gnu: Add soju. 
* gnu/packages/irc.scm (soju): New variable..

Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I18b7e574339e98fdf2623338aac1635c8e727699
 2024-05-07 21:33:44 +01:00
Jesse Eisses
13912821a2
gnu: go-github-com-matttproud-golang-protobuf-extensions-pbutil: Update to 2.0.0. 
* gnu/packages/syncthing.scm (go-github-com-matttproud-golang-protobuf-extensions-pbutil):
Update to 2.0.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ia9f1acacd337b95526ee0b9b7b31f1de598f30d3
 2024-05-07 21:33:44 +01:00
Jesse Eisses
b2054615da
gnu: go-github-com-prometheus-client-golang: Update to 1.17.0. 
* gnu/packages/golang.scm (go-github-com-prometheus-client-golang):
Update to 1.17.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I4d3e9d3e61991f94fc2a7bd4b85e7d4010c4b508
 2024-05-07 21:32:36 +01:00
Jesse Eisses
2359feb658
gnu: go-github-com-prometheus-common: Update to 0.45.0. 
* gnu/packages/golang.scm (go-github-com-prometheus-common): Update to
0.45.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic03cdaf87253df869e1d791336189032fac0d625
 2024-05-07 15:38:28 +01:00
Jesse Eisses
b7800aa34f
gnu: go-github-com-prometheus-client-model: Update to 0.5.0. 
* gnu/packages/golang.scm (go-github-com-prometheus-client-model):
Update to 0.5.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iebb57390b99a4ed2567588872a9745a69aae9ced
 2024-05-07 15:38:28 +01:00
Jesse Eisses
881f9630c9
gnu: Add go-gopkg-in-irc-v4. 
* gnu/packages/irc.scm (go-gopkg-in-irc-v4): New variable.

Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ie1afdde3d1a23154e592445b5ce91e5918c6c822
 2024-05-07 15:38:28 +01:00
Sharlatan Hellseher
b6a8c4c142
gnu: go-gopkg-in-irc-v3: Enable tests. 
* gnu/packages/irc.scm (go-gopkg-in-irc-v3): Enable tests, remove input
lables.
[propagated-inputs]: Remove go-github-com-stretchr-testify.
[native-inputs]: Add go-github-com-stretchr-testify and
python-irc-parser-tests.

Change-Id: I83c8094e9417052781993c3cde900c47875a2029
 2024-05-07 15:38:28 +01:00
Sharlatan Hellseher
bb49060039
gnu: Add python-irc-parser-tests. 
* gnu/packages/irc.scm (python-irc-parser-tests): New variable.

Change-Id: Iaffea626ed06e228562b3c92123d30c9712de7c3
 2024-05-07 15:38:28 +01:00
Jesse Eisses
4f4034bb46
gnu: Add go-git-sr-ht-emersion-go-sqlite3-fts5. 
* gnu/packages/golang-xyz.scm (go-git-sr-ht-emersion-go-sqlite3-fts5):
New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Icb6f77b306ff5c8a816d8a42e90a1bf23115b38f
 2024-05-07 15:38:28 +01:00
Jesse Eisses
bb1beff54d
gnu: Add go-git-sr-ht-sircmpwn-go-bare. 
* gnu/packages/golang-xyz.scm (go-git-sr-ht-sircmpwn-go-bare): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iea3ac2489549fe4cb1b1ce216a998c30c9f996d6
 2024-05-07 15:38:28 +01:00
Sharlatan Hellseher
2799f6c6e1
gnu: go-github-com-mattn-go-sqlite3: Update to 1.14.22. 
* gnu/packages/golang-xyz.scm (go-github-com-mattn-go-sqlite3): Update to 1.14.22.

Change-Id: I01bf397b7d74db812883994deb2c2249adf14d1f
 2024-05-07 15:38:27 +01:00
Jesse Eisses
bea3defe23
gnu: Add go-github-com-pires-go-proxyproto. 
* gnu/packages/golang-xyz.scm (go-github-com-pires-go-proxyproto): New variable.

Change-Id: Iec8e8ead7e18cbbd9be00ec398d11e632e4b2ac4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-07 15:38:27 +01:00
Jesse Eisses
e78fb8223f
gnu: Add go-nhooyr-io-websocket. 
* gnu/packages/golang-web.scm (go-nhooyr-io-websocket): New variable.

Change-Id: Ifced88b4d916b8593e4b65022cf419c8ae18a769
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-07 15:38:27 +01:00
Jesse Eisses
c9bbfc9f3c
gnu: Add go-github-com-msteinert-pam. 
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Id84648d258d2f1c7f2c9902e80dccb06642d7787
 2024-05-07 15:38:27 +01:00
Jesse Eisses
d12456bebd
gnu: Add go-github-com-sherclockholmes-webpush-go. 
* gnu/packages/golang-web.scm (go-github-com-sherclockholmes-webpush-go): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ida07915e1659b79353dd267991bcb615ee5cc837
 2024-05-07 15:38:27 +01:00
Jesse Eisses
223c531ec4
gnu: Add go-github-com-golang-jwt-jwt. 
* gnu/packages/golang-crypto.scm (go-github-com-golang-jwt-jwt-v4): New variable.
(go-github-com-golang-jwt-jwt-v4): Inherit from go-github-com-golang-jwt-jwt.

Change-Id: I2382208434859b7a9b9a314930fa8769072964c7
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-05-07 15:38:25 +01:00
Efraim Flashner
014875b29e
gnu: psascan: Limit to 64-bit systems. 
* gnu/packages/cpp.scm (psascan)[supported-systems]: New field.

Change-Id: I19eef41449a16b4440f3dd73cdb181c7c3383e84
 2024-05-07 01:44:28 +03:00
Efraim Flashner
51c711a328
gnu: bitmapperbs: Limit to x86_64-linux. 
* gnu/packages/bioinformatics.scm (bitmapperbs)[supported-systems]: New
field.

Change-Id: I03484413e5af8e779fe0e5199e456eaab124e8b7
 2024-05-07 01:31:20 +03:00
Efraim Flashner
cc051064c5
gnu: grantlee: Fix build on some architectures. 
* gnu/packages/qt.scm (grantlee)[source]: Add patch.
* gnu/packages/patches/grantlee-register-metaenumvariable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: Iecef53baeb023a80139ac70b9caefcfa7b79a3c6
 2024-05-07 00:43:24 +03:00
Efraim Flashner
0a5929033f
gnu: minimap2: Fix make-flags. 
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust the
make-flags to contain actual build flags for all architectures.

Change-Id: I5b4077a25d6d46172ff566ceaa16629ebf066721
 2024-05-06 23:53:04 +03:00
Efraim Flashner
6571231f2d
gnu: minimap2: Update to 2.28. 
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.28.
[arguments]: Adjust custom 'install phase to not delete non-existent
file.  Remove trailing #t from phase.

Change-Id: Ie6cc21f2b761532f08967efea54d3a12b944f213
 2024-05-06 23:42:22 +03:00
Efraim Flashner
a4c0a58594
gnu: proteinortho: Add tunable property. 
* gnu/packages/bioinformatics.scm (proteinortho)[properties]: Add
tunable? flag.

Change-Id: If59d5785c8c8e4aedb5b88479da6fba0e9754640
 2024-05-06 23:16:57 +03:00
Efraim Flashner
dd23efe020
gnu: proteinortho: Update to 6.3.2. 
* gnu/packages/bioinformatics.scm (proteinortho): Update to 6.3.2.
[source]: Adjust snippet to also delete lapack source tarball.
[arguments]: Rewrite using g-expressions.  Add flag to run tests
sequentially.  Adjust make-flags for cross-compiling and to set PREFIX.
Delete 'configure and custom 'configure phase.  Remove trailing #t from
phases.

Change-Id: I40249e5ac92c26223119b81b4677c08d5ab230e6
 2024-05-06 23:16:56 +03:00
Efraim Flashner
d967ffb367
gnu: python-http-client: Fix test suite. 
* gnu/packages/python-web.scm (python-http-client)[arguments]: Add a
phase to adjust the tests to not be dependant on the current date.

Change-Id: I94f512c9b019173f6e15e04791dbfc662fc93c89
 2024-05-06 23:16:56 +03:00
Efraim Flashner
a9c89cd11b
gnu: r-lpsymphony: Fix building on some architectures. 
* gnu/packages/bioconductor.scm (r-lpsymphony) [arguments]: When
building for aarch64-linux or riscv64-linux replace all the config.guess
and config.sub files with newer ones.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.

Change-Id: Iaddda8c6d7330fb02bdd83733e7fa70b851a82f2
 2024-05-06 23:16:55 +03:00
Efraim Flashner
3053c40995
gnu: mouseloupe: Update the package style. 
* gnu/packages/accessibility.scm (mouseloupe)[arguments]: Switch to
g-expressions.

Change-Id: I9af4433b2effbcbd9c0178ea3f02d81e202f4c05
 2024-05-06 23:16:55 +03:00
Efraim Flashner
2d5b779b45
gnu: mouseloupe: Don't hardcode building for i686. 
* gnu/packages/accessibility.scm (mouseloupe)[source]: Add snippet to
remove flag from the Makefile explicitly building for i686.

Change-Id: Iec5a5002a51ff7f2be469f6815e6ff6166b32876
 2024-05-06 23:16:54 +03:00
Efraim Flashner
284938bb72
gnu: wolf-shaper: Add tunable property. 
* gnu/packages/music.scm (wolf-shaper)[properties]: Add tunable? flag.

Change-Id: I32b26effaa18b814fcca8f4cd88b083969682a81
 2024-05-06 23:16:54 +03:00
Efraim Flashner
f4c954e314
gnu: wolf-shaper: Fix building on more architectures. 
* gnu/packages/music.scm (wolf-shaper)[arguments]: Add make-flag to
disable optimizations.

Change-Id: I2976d1769324765df3f0aa8b636f528526bdfd78
 2024-05-06 23:16:53 +03:00
Efraim Flashner
5a69a52d74
gnu: solidity: Update to 0.8.25. 
* gnu/packages/solidity.scm (solidity): Update to 0.8.25.
[arguments]: Add configure-flag to allow an older version of z3.
[inputs]: Replace fmt-8.0 with fmt.

Change-Id: I1501d16323566c066c58c1c4bbf90dd17a23f021
 2024-05-06 23:16:53 +03:00
Efraim Flashner
614bd4a777
gnu: solidity: Allow a newer version of jsoncpp. 
* gnu/packages/solidity.scm (solidity)[arguments]: Add a phase to allow
newer versions of jsoncpp.

Change-Id: I4f7b5b3685f8d784da221ccb0eea1ba297e3e0b8
 2024-05-06 23:16:53 +03:00
Efraim Flashner
d3bfc94271
gnu: galera: Update to 26.4.18. 
* gnu/packages/databases.scm (galera): Update to 26.4.18.
[inputs]: Move check from here ...
[native-inputs]: ... to here.

Change-Id: Iac2ce8e1ebbe0e4059b26b7e83afbdafea19641b
 2024-05-06 23:16:52 +03:00
Efraim Flashner
f55af58045
gnu: strongswan: Remove pre-generated files. 
* gnu/packages/vpn.scm (strongswan)[source]: Add snippet to remove some
pre-generated files.
[native-inputs]: Add bison, flex, perl.

Change-Id: Ifc316a1c309f8687418455189457cee83b06bfa1
 2024-05-06 23:16:52 +03:00