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Author SHA1 Message Date
Ricardo Wurmus
df7f9236ee
gnu: r-ggpmisc: Update to 0.5.0. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.0.
[propagated-inputs]: Add r-confintr.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
11669e8ee4
gnu: r-ggvenndiagram: Update to 1.2.2. 
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.2.2.
[propagated-inputs]: Remove r-stringr; add r-yulab-utils.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
0fb5a1bd2f
gnu: r-zoo: Update to 1.8-11. 
* gnu/packages/cran.scm (r-zoo): Update to 1.8-11.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
af257e509d
gnu: r-babelwhale: Update to 1.1.0. 
* gnu/packages/cran.scm (r-babelwhale): Update to 1.1.0.
[propagated-inputs]: Add r-digest, r-fs, and r-glue.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
9878daa19d
gnu: r-rticles: Update to 0.24. 
* gnu/packages/cran.scm (r-rticles): Update to 0.24.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
ae4a57b967
gnu: r-googlesheets4: Update to 1.0.1. 
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.1.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
5ba2bda97c
gnu: r-dixontest: Update to 1.0.4. 
* gnu/packages/cran.scm (r-dixontest): Update to 1.0.4.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
6e052e0b7c
gnu: r-datawizard: Update to 0.6.0. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.6.0.
 2022-09-20 17:02:10 +02:00
Ricardo Wurmus
93328f8b89
gnu: r-activedriverwgs: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
8f3787576c
gnu: r-htscluster: Update to 2.0.10. 
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
b1dd1f221f
gnu: r-perfmeas: Update to 1.2.5. 
* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
9c91113ee7
gnu: r-valr: Update to 0.6.5. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
1e3d01dd05
gnu: r-httpuv: Update to 1.6.6. 
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Replace this patch...
* gnu/packages/patches/r-httpuv-1.6.6-unvendor-libuv.patch: ...with this.
* gnu/local.mk (dist_patch_DATA): Update patch file.
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.6.
[source]: Update patch.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
7da529c577
gnu: r-dt: Update to 0.25. 
* gnu/packages/statistics.scm (r-dt): Update to 0.25; update jszip to 3.10.1.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
921ac834db
gnu: r-torch: Update to 0.8.1. 
* gnu/packages/cran.scm (r-torch): Update to 0.8.1.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
8e321254c0
gnu: r-torch: Do not hardcode Python version. 
* gnu/packages/cran.scm (r-torch)[arguments]: Do not hardcode Python version 3.9.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
2b39d85ac4
gnu: liblantern: Update to 0.8.1. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.8.1.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
7531efe54d
gnu: liblantern: Do not hardcode Python version. 
* gnu/packages/machine-learning.scm (liblantern)[arguments]: Do not hardcode
Python version.
 2022-09-20 17:02:09 +02:00
Ricardo Wurmus
851441a5d9
gnu: r-arrow: Update to 9.0.0.1. 
* gnu/packages/cran.scm (r-arrow): Update to 9.0.0.1.
 2022-09-20 17:02:08 +02:00
Ricardo Wurmus
e5e5b2a15a
gnu: apache-arrow: Update to 9.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 9.0.0.
 2022-09-20 17:02:08 +02:00
Ricardo Wurmus
71d87df8bf
gnu: r-rintrojs: Update to 0.3.2. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.2.
 2022-09-20 17:02:08 +02:00
Ricardo Wurmus
487fb5f624
gnu: Add r-confintr. 
* gnu/packages/cran.scm (r-confintr): New variable.
 2022-09-20 17:02:08 +02:00
Ricardo Wurmus
9e589ca6e3
gnu: rust-sprs-0.10: Inherit from rust-sprs-0.11. 
* gnu/packages/crates-io.scm (rust-sprs-0.10): Inherit from rust-sprs-0.11.
 2022-09-20 17:01:55 +02:00
Ricardo Wurmus
4d4e2a9444
gnu: Add rust-sprs-0.11. 
* gnu/packages/crates-io.scm (rust-sprs-0.11): New variable.
 2022-09-20 17:01:55 +02:00
Ricardo Wurmus
f5483e2661
gnu: Add rust-sprs-0.10. 
* gnu/packages/crates-io.scm (rust-sprs-0.10): New variable.
 2022-09-20 17:01:55 +02:00
Ricardo Wurmus
76e6459722
gnu: Add rust-tobj-2. 
* gnu/packages/crates-io.scm (rust-tobj-2): New variable.
 2022-09-20 17:01:54 +02:00
Ricardo Wurmus
cef61a0e69
gnu: Add rust-tobj-3. 
* gnu/packages/crates-io.scm (rust-tobj-3): New variable.
 2022-09-20 17:01:54 +02:00
Ricardo Wurmus
c311c88122
gnu: Add rust-linecount-0.1. 
* gnu/packages/crates-io.scm (rust-linecount-0.1): New variable.
 2022-09-20 17:01:54 +02:00
Mark H Weaver
4e88a7bfcb
gnu: icecat: Update to 102.3.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-40956, CVE-2022-40957, CVE-2022-40958,
CVE-2022-40959, CVE-2022-40960, and CVE-2022-40962.

Partly based on earlier work by:
  Jonathan Brielmaier <jonathan.brielmaier@web.de>
  John Kehayias <john.kehayias@protonmail.com>
  Pierre Langlois <pierre.langlois@gmx.com>
  Clement Lassieur <clement@lassieur.org>

* gnu/packages/gnuzilla.scm (all-mozilla-locales)
(%icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.  Update to latest
gnuzilla commit.  Remove the code that previously applied
"icecat-use-older-reveal-hidden-html.patch".
(icecat)[inputs]: Use icu4c-71.
[native-inputs]: Use rust-1.59.  Use the default llvm and clang.
[arguments]: Add "--without-wasm-sandboxed-libraries" to the configure
flags.  Add 'remove-cargo-frozen-flag' phase.  In the 'configure'
phase, set the "MACH_BUILD_PYTHON_NATIVE_PACKAGE_SOURCE",
"GUIX_PYTHONPATH", and "MOZBUILD_STATE_PATH" environment variables.
Remove the code that previously set the "MACH_USE_SYSTEM_PYTHON" and
"MOZ_NOSPAM" environment variables.  In the 'install-desktop-entry'
phase, add "StartupWMClass=Navigator" to the desktop file.
[description]: "IceCat 91" --> "IceCat 102".
(all-mozilla-91-locales, %icecat-91-version, icecat-91-source): New
variables bound to the old values, for use by icedove.
(icedove)[source]: Ues 'icecat-91-source'.
 2022-09-20 10:40:41 -04:00
Mark H Weaver
9b0ec71df5
gnu: Add rust-cbindgen-0.23 and its dependencies to gnuzilla.scm. 
This will be needed to build IceCat 102.

* gnu/packages/gnuzilla.scm (rust-textwrap-0.15-promise)
(rust-clap-lex-0.2, rust-clap-derive-3.2.15-promise)
(rust-clap-3.2.16-promise, rust-cbindgen-0.24-promise)
(rust-cbindgen-0.23-promise): New variables.

Based on work by: John Kehayias <john.kehayias@protonmail.com>.
 2022-09-20 10:39:57 -04:00
Mark H Weaver
c6b9bf0da2
gnu: Add rust-1.59 to gnuzilla.scm. 
This will be needed to build IceCat 102.

* gnu/packages/gnuzilla.scm (rust-1.58-promise, rust-1.59-promise):
New variables.
 2022-09-20 10:39:41 -04:00
Efraim Flashner
f6e2ca3651
gnu: vim: Update to 9.0.0509. 
* gnu/packages/vim.scm (vim): Update to 9.0.0509.
[arguments]: Adjust custom 'patch-absolute-paths phase to adjust
substitutions.
 2022-09-20 14:17:17 +03:00
Efraim Flashner
6a2f735983
gnu: tree: Use https. 
* gnu/packages/admin.scm (tree)[source]: Use https.
[home-page]: Same.
 2022-09-20 13:57:57 +03:00
Efraim Flashner
00537ec17d
gnu: tree: Update to 2.0.4. 
* gnu/packages/admin.scm (tree): Update to 2.0.4.
[arguments]: Add phase to fix the version string in the man page.
 2022-09-20 13:57:22 +03:00
Efraim Flashner
5a9e3b7c39
gnu: cross: Add default configure-flags. 
Reported by Arun Isaac <arunisaac@systemreboot.net>.

* gnu/packages/cross-base.scm (cross)[arguments]: Add a default for
configure-flags so '--target=' is always added.
 2022-09-20 11:26:12 +03:00
Trevor Richards
4248fe076e
gnu: Add sbcl-stumpwm-pamixer. 
* gnu/packages/wm.scm (sbcl-stumpwm-pamixer): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-09-20 09:15:44 +02:00
Liliana Marie Prikler
e58bafcca4
gnu: evolution: Update to 3.46.0. 
* gnu/packages/gnome.scm (evolution): Update to 3.46.0.
 2022-09-19 21:13:39 +02:00
Liliana Marie Prikler
d753a528ce
gnu: evolution-data-server: Update to 3.46.0. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.46.0.
 2022-09-19 21:13:31 +02:00
Liliana Marie Prikler
96c7887864
gnu: gnome-todo: Update to "Endeavour" 42.0. 
* gnu/packages/gnome.scm (gnome-todo): Deprecate and rename to...
(endeavour): ... this.
[source]: Use git origin.
* gnu/packages/patches/gnome-todo-libportal.patch: Deleted file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
 2022-09-19 20:51:13 +02:00
Artyom V. Poptsov
72fe3c0a35
gnu: Add java-argparse4j. 
* gnu/packages/java.scm (java-argparse4j): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-09-19 15:43:28 +02:00
Nicolas Goaziou
d845326b5c
Revert "gnu: Add emacs-org-roam-ui." 
This reverts commit 1225fe013e.

The package includes minified Javascript. See
<https://issues.guix.gnu.org/issue/57891>.
 2022-09-19 12:19:53 +02:00
jgart
4ca4b96e2a
gnu: Add cl-bubble-operator-upwards. 
* gnu/packages/lisp-xyz.scm (cl-bubble-operator-upwards,
  ecl-bubble-operator-upwards, sbcl-bubble-operator-upwards): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-09-19 11:11:56 +02:00
Efraim Flashner
f9ada7fdc4
gnu: connman: Patch CVE-2022-32392, CVE-2022-32293. 
* gnu/packages/connman.scm (connman)[source]: Add patches.
* gnu/packages/patches/connman-CVE-2022-32292.patch,
gnu/packages/patches/connman-CVE-2022-32293-pt1.patch,
gnu/packages/patches/connman-CVE-2022-32293-pt1.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2022-09-19 11:19:49 +03:00
Efraim Flashner
90e316535a
gnu: enlightenment: Update to 0.25.4. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.25.4.
 2022-09-19 11:12:44 +03:00
Efraim Flashner
7416ad2cda
gnu: efl: Update to 1.26.3. 
* gnu/packages/enlightenment.scm (efl): Update to 1.26.3.
 2022-09-19 11:12:41 +03:00
Efraim Flashner
c46a96fe33
gnu: luajit: Remove riscv64-linux from supported-systems. 
* gnu/packages/lua.scm (luajit)[supported-systems]: Remove riscv64-linux
from the supported-systems.
 2022-09-19 10:25:05 +03:00
Olivier Dion
021b2dd0ae
gnu: lttng-tools: Update to 2.13.8. 
* gnu/packages/instrumentation.scm (lttng-tools): Update to 2.13.8.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-19 09:07:18 +02:00
Olivier Dion
6e47d9f6f4
gnu: lttng-ust: Update to 2.13.4. 
* gnu/packages/instrumentation.scm (lttng-ust): Update to 2.13.4.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-19 09:07:18 +02:00
Olivier Dion
013545cc84
gnu: lttng-modules: Update to 2.13.5. 
* gnu/packages/instrumentation.scm (lttng-modules): Update to 2.13.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-09-19 09:07:18 +02:00
Mathieu Othacehe
41b30f40be
Update NEWS. 
* NEWS: Mention Shepherd 0.9.2 upgrade.
 2022-09-19 09:06:47 +02:00