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Author SHA1 Message Date
Ricardo Wurmus
7e88aaefc0
gnu: r-ps: Update to 1.7.5. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.5.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6a945dd12c
gnu: r-fontawesome: Update to 0.5.1. 
* gnu/packages/cran.scm (r-fontawesome): Update to 0.5.1.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
cf0453d1d5
gnu: r-climatol: Update to 4.0.0. 
* gnu/packages/cran.scm (r-climatol): Update to 4.0.0.
[propagated-inputs]: Remove r-mapdata and r-maps.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
b1880c7759
gnu: r-carrier: Update to 0.1.1. 
* gnu/packages/cran.scm (r-carrier): Update to 0.1.1.
[propagated-inputs]: Remove r-pryr; add r-lobstr.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
f80e8e4574
gnu: r-cplm: Update to 0.7-11. 
* gnu/packages/cran.scm (r-cplm): Update to 0.7-11.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
5f061c25f3
gnu: r-castor: Update to 1.7.9. 
* gnu/packages/cran.scm (r-castor): Update to 1.7.9.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
2b08f6874e
gnu: r-tictoc: Update to 1.2. 
* gnu/packages/bioinformatics.scm (r-tictoc): Update to 1.2.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
49afe64152
gnu: r-radiant-data: Update to 1.5.6. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.5.6.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add sources for html2canvas.js.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
376c52a949
gnu: r-rliger: Strip jar timestamps. 
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase
'strip-jar-timestamps; remove trailing #T; add ant-build-system modules.
[source]: Simplify snippet.
[native-inputs]: Add zip.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
46d78bf045
gnu: r-hpar: Avoid internet access. 
ExperimentHub::createHubAccessors needs internet access.  When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors.  We set the variable GUIX_BUILD to conditionally disable
this call.

* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
9a2908211c
gnu: r-coin: Delete file with bad encoding. 
* gnu/packages/cran.scm (r-coin)[arguments]: Add phase
'remove-test-file-with-latin-encoding.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
63dea3caf0
gnu: r-cplm: Fix build with R 4.3.0. 
* gnu/packages/cran.scm (r-cplm)[arguments]: Update headers to find definition
for GET_SLOT.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
a605826139
gnu: r-tricycle: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c33697b714
gnu: r-biscuiteer: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
04978d4592
gnu: r-omnipathr: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
b2a3e274ec
gnu: r-omicade4: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
15f364a933
gnu: r-dmrseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3862877bb2
gnu: r-dada2: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
56586f9b9e
gnu: r-bsseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
096133af16
gnu: r-biotmle: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0f594abe26
gnu: r-biotip: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
5a5d466e15
gnu: r-bioqc: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
cb91d8ff79
gnu: r-bionet: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e1292069fc
gnu: r-bionero: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
26c76918cb
gnu: r-biomvcclass: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ce9ee69644
gnu: r-mvcclass: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3d49b388a5
gnu: r-biomformat: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c10979dcbe
gnu: r-biodb: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4eb1e7e542
gnu: r-biocdockermanager: Update to 1.11.0. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4684b0d333
gnu: r-biocthis: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
fbd4e9195f
gnu: r-basilisk: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d91cc19ee9
gnu: r-basilisk-utils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ad0efa110e
gnu: r-dir-expiry: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1b80b39aa7
gnu: r-genetclassifier: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
939155e312
gnu: r-minet: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d297d24edb
gnu: r-biobtreer: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1ff662c8e2
gnu: r-bgeedb: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
189f9d805e
gnu: r-bgeecall: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4dd9fdb68f
gnu: r-beclear: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0d879deae1
gnu: r-megadepth: Update to 1.9.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c09a9bc427
gnu: r-ballgown: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.32.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e5e7089db5
gnu: r-guitar: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3616dd923f
gnu: r-chromstar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.26.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1b3be92024
gnu: r-snpstats: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.50.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
72288df46a
gnu: r-snapcgh: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.70.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
61432d53ff
gnu: r-pathview: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.40.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
ef6059cf27
gnu: r-ldblock: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.30.0.
[propagated-inputs]: Remove r-ensdb-hsapiens-v75, r-ensembldb, r-genomeinfodb,
r-genomicfiles, r-rsamtools, r-snpstats, and r-variantannotation; add
r-rlang.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c00d4a394d
gnu: r-kegggraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.60.0.
 2023-04-29 20:28:06 +02:00