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Author SHA1 Message Date
Ricardo Wurmus
82cb9a99f8
gnu: r-rbowtie2: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus
a8840a04d7
gnu: r-motifstack: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus
69f3b27822
gnu: r-clusterprofiler: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1.
[propagated-inputs]: Add r-rlang.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus
fc1c3c6f9f
gnu: r-gosemsim: Update to 2.14.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus
0827e0be36
gnu: r-oligo: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1.
 2020-08-20 21:25:33 +02:00
Ricardo Wurmus
1c43c6fa6b
gnu: r-oligoclasses: Update to 1.50.4. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4.
 2020-08-20 21:25:29 +02:00
Tobias Geerinckx-Rice
15593de33c
gnu: bind: Update to 9.16.6 [multiple CVE fixes]. 
Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and
CVE-2020-8624.

* gnu/packages/dns.scm (isc-bind): Update to 9.16.6.
 2020-08-20 21:17:06 +02:00
Tobias Geerinckx-Rice
3f28ebd0ff
gnu: perl-catalyst-plugin-configloader: Update to 0.35. 
* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35.
 2020-08-20 21:17:05 +02:00
Tobias Geerinckx-Rice
a7841fc486
gnu: perl-catalyst-devel: Update to 1.41. 
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41.
 2020-08-20 21:17:04 +02:00
Tobias Geerinckx-Rice
a5526c75b8
gnu: ne: Update to 3.3.0. 
* gnu/packages/text-editors.scm (ne): Update to 3.3.0.
 2020-08-20 21:17:04 +02:00
Tobias Geerinckx-Rice
149d91814c
gnu: p11-kit: Update to 0.23.21. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.21.
 2020-08-20 21:17:03 +02:00
Ricardo Wurmus
d7f578f8c2
gnu: r-pbapply: Update to 1.4-3. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
800d95fe73
gnu: r-chron: Update to 2.3-56. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-56.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
5e1c17a750
gnu: r-dplyr: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.2.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
bc438f5a8f
gnu: r-mgcv: Update to 1.8-32. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-32.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
5eb753a276
gnu: r-mass: Update to 7.3-52. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-52.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
4be3979e99
gnu: r-stanheaders: Update to 2.21.0-6. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-6.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
69939ce955
gnu: r-showtext: Update to 0.9. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
4dcbea180d
gnu: r-haplo-stats: Update to 1.8.2. 
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.2.
[propagated-inputs]: Add r-arsenal.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
c4a48418f7
gnu: r-emmeans: Update to 1.5.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.0.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
88bf81c61b
gnu: r-abjutils: Update to 0.3.1. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.3.1.
[propagated-inputs]: Remove r-devtools, r-furrr, r-future, r-glue, r-httr, r-progress, r-readr, r-scales, and r-tibble.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
432c62787c
gnu: r-hdf5r: Update to 1.3.3. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.3.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
74b438e563
gnu: r-hardyweinberg: Update to 1.6.6. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.6.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
c764026c26
gnu: r-jomo: Update to 2.7-2. 
* gnu/packages/cran.scm (r-jomo): Update to 2.7-2.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
4e6aa9aa6f
gnu: r-ape: Update to 5.4-1. 
* gnu/packages/cran.scm (r-ape): Update to 5.4-1.
 2020-08-20 19:32:24 +02:00
Ricardo Wurmus
677e83a927
gnu: Add r-arsenal. 
* gnu/packages/cran.scm (r-arsenal): New variable.
 2020-08-20 19:32:23 +02:00
Andreas Enge
280455809d
gnu: python-fpylll: Update to 0.5.2. 
* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.2.
 2020-08-20 19:27:10 +02:00
Andreas Enge
b9ef00258c
gnu: fplll: Update to 5.3.2. 
* gnu/packages/algebra.scm (fplll): Update to 5.3.2.
 2020-08-20 19:23:03 +02:00
Tobias Geerinckx-Rice
d9461f688c
gnu: python-libtmux: Update to 0.8.3. 
* gnu/packages/tmux.scm (python-libtmux): Update to 0.8.3.
 2020-08-20 18:40:45 +02:00
Tobias Geerinckx-Rice
37e64053b3
gnu: vis: Run most tests. 
* gnu/packages/text-editors.scm (vis)[arguments]: Add ‘unpack-test-suite’
and ‘set-up-tests’ phase.  Run the tests after wrapping vis.
[native-inputs]: Add vis-test origin.
 2020-08-20 18:40:44 +02:00
Tobias Geerinckx-Rice
d198eca0b3
gnu: vis: Fetch sources from git. 
* gnu/packages/text-editors.scm (vis)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2020-08-20 18:40:43 +02:00
Tobias Geerinckx-Rice
c82cf31def
gnu: vis: Update to 0.6. 
* gnu/packages/text-editors.scm (vis): Update to 0.6.
 2020-08-20 18:40:43 +02:00
Michael Rohleder
25a6846462
gnu: emacs-browse-at-remote: Update to 0.14.0. 
* gnu/packages/emacs-xyz.scm (emacs-browse-at-remote): Update to 0.14.0.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:27:32 +03:00
Michael Rohleder
dfe4d0134b
gnu: emacs-perspective: Update to 2.10. 
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.10.
(arguments): Run tests suite.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:27:32 +03:00
Michael Rohleder
c00ebfd6d7
gnu: emacs-ob-restclient: Update to 0.02-2.f7449b2. 
* gnu/packages/emacs-xyz.scm (emacs-ob-restclient): Update to 0.02-2.f7449b2.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:26:08 +03:00
Michael Rohleder
fba499cb07
gnu: emacs-visual-regexp: Update to 1.1.2. 
* gnu/packages/emacs-xyz.scm (emacs-visual-regexp): Update to 1.1.2.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-20 19:09:54 +03:00
Nicolas Goaziou
e6e5b797f3
gnu: keepassxc: Update to 2.6.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.6.1.
 2020-08-20 16:07:51 +02:00
Nicolas Goaziou
19da905921
gnu: emacs-org-superstar: Update to 1.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.4.0.
 2020-08-20 14:08:32 +02:00
Jakub Kądziołka
a9e961b0c3
gnu: ccextractor: Fix build. 
* gnu/packages/gstreamer.scm (ccextractor): Add LEPTONICA to inputs.
 2020-08-20 13:53:01 +02:00
Tobias Geerinckx-Rice
2ca5b4858f
gnu: chrony: Update to 3.5.1 [fixes CVE-2020-14367]. 
* gnu/packages/ntp.scm (chrony): Update to 3.5.1.
 2020-08-20 12:53:06 +02:00
Nicolas Goaziou
3c8ab1f3bf
gnu: grammalecte: Update to 1.12.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.12.0.
 2020-08-20 12:52:04 +02:00
Morgan Smith
8aa31b9305
gnu: emacs-doom-modeline: Update to 3.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 3.0.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-20 09:19:49 +02:00
Tobias Geerinckx-Rice
cdbb0e55c1
gnu: blender: Add colour management support. 
* gnu/packages/graphics.scm (blender)[inputs]: Add opencolorio.
 2020-08-20 06:20:11 +02:00
Tobias Geerinckx-Rice
2283cf4c1d
gnu: Add opencolorio. 
* gnu/packages/image-processing.scm (opencolorio): New public variable.
 2020-08-20 06:20:10 +02:00
Tobias Geerinckx-Rice
48d9c7c59a
gnu: wireshark: Update to 3.2.6. 
* gnu/packages/networking.scm (wireshark): Update to 3.2.6.
 2020-08-20 06:16:46 +02:00
Tobias Geerinckx-Rice
cecaa0b383
gnu: libostree: Update to 2020.5. 
* gnu/packages/package-management.scm (libostree): Update to 2020.5.
 2020-08-20 06:16:45 +02:00
Tobias Geerinckx-Rice
b14a139c96
gnu: iperf: Update to 3.9. 
* gnu/packages/networking.scm (iperf): Update to 3.9.
 2020-08-20 06:16:45 +02:00
Tobias Geerinckx-Rice
77c96b5cb7
gnu: nng: Update to 1.3.2. 
* gnu/packages/networking.scm (nng): Update to 1.3.2.
 2020-08-20 06:16:44 +02:00
Tobias Geerinckx-Rice
ac570f00b0
gnu: mate-power-manager: Update to 1.24.2. 
* gnu/packages/mate.scm (mate-power-manager): Update to 1.24.2.
[source]: Hard-code NAME.
 2020-08-20 06:16:44 +02:00
Timothy Sample
8d06906017
gnu: agda: Adjust for using shared libraries. 
See also 9e5496e0ae.

* gnu/packages/agda.scm (agda)[arguments]: Add a phase that sets
'LD_LIBRARY_PATH'; update the 'configure' phase to match the current
Haskell build system code.
 2020-08-19 23:58:47 -04:00