* gnu/packages/patches/python-3.8-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.8)[replacement]: New field.
(python-3.8/fixed): New variable.
This is a follow-up to commit f1f6e49190.
* gnu/packages/bioinformatics.scm (star-for-pigx): New variable.
(pigx-rnaseq, pigx-scrnaseq)[inputs]: Replace star with star-for-pigx.
* doc/guix.texi (sane-service-type): Move from between documentation
about geoclue, expand slightly.
(sane-backends-minimal): New description.
(sane-backends): New description, new example.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
This avoids a closure allocation when 'lookup-cached-object' is called.
* guix/store.scm (lookup-cached-object): Avoid optional/keyword
arguments and inline.
(%mcached): Adjust accordingly.
This reduces the total amount of memory allocated by 8% when running
"guix build qemu -d --no-grafts".
* guix/gexp.scm (fold/tree): New procedure.
(gexp-inputs)[interesting?]: New procedure.
[add-reference-inputs]: Change (lst ...) clause to (? pair? lst), and
use 'fold/tree' to recurse into it.
(gexp-inputs)[add-reference-output]: Likewise, and remove
plain (lst ...) clause.
Call 'fold'.
(gexp->sexp)[reference->sexp]: In the list case, avoid boxing and
recursive call when the object has a plain non-aggregate type.
This avoids double traversal of references and extra bookkeeping,
thereby further reducing memory allocations.
* guix/gexp.scm (lower-gexp): Include only one call to 'lower-inputs'.
(gexp-inputs): Remove #:native? parameter.
[set-gexp-input-native?]: New procedure.
[add-reference-inputs]: Use it.
(gexp-native-inputs): Remove.
* tests/gexp.scm (gexp-native-inputs): Remove.
(gexp-input->tuple): Include 'gexp-input-native?'.
("let-system")
("let-system, nested")
("ungexp + ungexp-native")
("ungexp + ungexp-native, nested")
("ungexp + ungexp-native, nested, special mixture")
("input list")
("input list + ungexp-native")
("input list splicing")
("input list splicing + ungexp-native-splicing")
("gexp list splicing + ungexp-splicing"): Adjust accordingly.
This slightly reduces memory allocation.
* guix/gexp.scm (lower-inputs): Expect a list of <gexp-input> rather
than a list of tuples.
(lower-reference-graphs)[tuple->gexp-input]: New procedure.
Use it.
(gexp-inputs): Return a list of <gexp-input> rather than a list of
tuples.
* tests/gexp.scm (gexp-input->tuple): New procedure.
("one input package")
("one input package, dotted list")
("one input origin")
("one local file")
("one local file, symlink")
("one plain file")
("two input packages, one derivation, one file")
("file-append")
("file-append, output")
("file-append, nested")
("let-system")
("let-system, nested")
("ungexp + ungexp-native")
("ungexp + ungexp-native, nested")
("ungexp + ungexp-native, nested, special mixture")
("input list")
("input list + ungexp-native")
("input list splicing")
("input list splicing + ungexp-native-splicing")
("gexp list splicing + ungexp-splicing"): Adjust accordingly.
This is a follow-up of ab054868af. The test was
failing because the Shepherd control socket wasn't ready yet. Restore it but
make sure that the control socket is available first.
* gnu/tests/cuirass.scm ("shepherd socket ready"): New test.
("cuirass running"): Restore it.
* gnu/services/cuirass.scm (cuirass-shepherd-service): Add "postgres-roles" to
cuirass requirements. Set cuirass-web requirements to cuirass only. Remove
"guix-daemon" and "networking" from cuirass-remote-server requirements as are
already required by cuirass.
Make sure that the postgresql-roles script is completed before declaring the
postgresql-roles service as started.
* gnu/services/databases.scm (postgresql-create-roles): Return the command
line instead of a program-file.
(postgresql-role-shepherd-service): Use fork+exec-command to start the role
creation script and wait for its completion before returning.
Instead of returning multiple services in simple-cuirass-services, rely on the
instantiate-missing-services procedure to instantiate postgresql and
postgresql-role-service-type when missing.
Turn simple-cuirass-services procedure into
simple-cuirass-configuration->specs, that takes a simple-cuirass-configuration
record and returns a Cuirass specification.
Suggested-by: Ludovic Courtès <ludo@gnu.org>
* gnu/services/cuirass.scm (%default-cuirass-config): Remove it.
(simple-cuirass-services): Rename it to ...
(simple-cuirass-configuration->specs): ... this procedure.
* gnu/tests/cuirass.scm (cuirass-services): Remove postgresql and
postgresql-role services that are automatically instantiated.
(simple-cuirass-service): New variable.
(%cuirass-simple-test): Adapt it to use simple-cuirass-configuration->specs
instead of simple-cuirass-services.
* doc/guix.texi (Simple Cuirass): Update it.
Previously, 'guix install foo -r bar' would crash with a backtrace
because NAME would be #\r (a character instead of a string).
* guix/scripts.scm (parse-command-line)[parse-options-from]: Call
'option-hint' only when NAME is a string.
Commit 8f710cc598 introduced a duplicate
ocaml-llvm@9.0.1 package, which was flagged by a test failure in
tests/packages.scm.
* gnu/packages/ocaml.scm (make-ocaml-llvm): Define as 'mlambdaq'.
