Commit graph

62602 commits

Author SHA1 Message Date
Ricardo Wurmus
7f94cf0184
gnu: r-reportingtools: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
7f34dd58e9
gnu: r-regioner: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
07bea01092
gnu: r-hpar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
c2f4ad96f5
gnu: r-annotate: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus
acaf8a2342
gnu: r-affxparser: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.60.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
fa61069781
gnu: r-affycoretools: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.60.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
36d4ca410d
gnu: r-affycontam: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.46.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
251c18f1ed
gnu: r-affycompatible: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.48.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
66aeb1b46d
gnu: r-affycomp: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.64.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
2e15c16f1e
gnu: r-biocgenerics: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.34.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
bc217e4c0c
gnu: r-biocversion: Update to 3.11.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.11.1.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
1ab0380db9
gnu: r-cummerbund: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.30.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
751fa8ff71
gnu: r-coverageview: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.26.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
725eea00da
gnu: r-ideoviz: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.24.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
a3b55161c7
gnu: r-delayedmatrixstats: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
47c7670c43
gnu: r-scran: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.16.0.
[propagated-inputs]: Add r-iranges.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus
7039b53945
gnu: r-scater: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.1.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
9e7acf2f14
gnu: r-singlecellexperiment: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.10.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
16dd6bacaa
gnu: r-beachmat: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
87d5444d9f
gnu: r-rhdf5lib: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.0.
[source]: Update snippet.
[arguments]: Replace ZLIB variables in Makevars.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
cf907680e8
gnu: r-hdf5array: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.0.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
46f188d1df
gnu: r-hitc: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.32.0.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
6be25cc2db
gnu: r-fithic: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
a811751f49
gnu: r-sushi: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.26.0.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
ddef43a29d
gnu: r-gwascat: Update to 2.20.1.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.20.1.
[propagated-inputs]: Remove r-homo-sapiens; add r-ggplot2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
522da60b29
gnu: r-gviz: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.32.0.
[propagated-inputs]: Add r-ensembldb.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
a97897bc3d
gnu: r-gqtlstats: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
6caad43c18
gnu: r-ldblock: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus
87772ab4dd
gnu: r-erma: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
aab0e28fc1
gnu: r-snpstats: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.38.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
42d8cd9f97
gnu: r-gqtlbase: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
7038aeb210
gnu: r-ggbio: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.36.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
07518c3a34
gnu: r-biovizbase: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.36.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
7c26687871
gnu: r-organismdbi: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.30.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
39da6fbc40
gnu: r-ensembldb: Update to 2.12.1.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
7a9e7e4844
gnu: r-dirichletmultinomial: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.30.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
ca5c92c0c7
gnu: r-complexheatmap: Update to 2.4.2.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.4.2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
8323ff3376
gnu: r-genomicfiles: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.24.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
817e4c8b68
gnu: r-gage: Update to 2.37.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.37.0.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
d80a6cacaf
gnu: r-keggrest: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:45 +02:00
Ricardo Wurmus
3422533bd9
gnu: r-fastseg: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.34.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
5fce232977
gnu: r-annotationhub: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
334e8d7b79
gnu: r-interactivedisplaybase: Update to 1.26.3.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.26.3.
[propagated-inputs]: Add r-dt.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
15990617eb
gnu: r-edaseq: Update to 2.22.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
c9059a3b0e
gnu: r-deseq: Update to 1.39.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.39.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
019bc36732
gnu: r-aroma-light: Update to 3.18.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.18.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
f6ddf20891
gnu: r-msnid: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.22.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
10a7ee2609
gnu: r-msnbase: Update to 2.14.2.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.14.2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
7b4fc6ae0a
gnu: r-pcamethods: Update to 1.80.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.80.0.
2020-06-13 01:19:44 +02:00
Ricardo Wurmus
8eb579883d
gnu: r-mzid: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:44 +02:00