Commit graph

62602 commits

Author SHA1 Message Date
Ricardo Wurmus
996f07b591
gnu: r-wrench: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
ff9f179a0c
gnu: r-xcms: Update to 3.10.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
bcd06bdbff
gnu: r-xbseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
1ec10e1987
gnu: r-roar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
a37a6ffb2d
gnu: r-yarn: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
70d90ae76d
gnu: r-quantro: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
761c9427bc
gnu: r-yaqcaffy: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.48.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
9ce80f9356
gnu: r-simpleaffy: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.64.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
f0439a1767
gnu: r-gcrma: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.60.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
8a5abc62d5
gnu: r-yapsa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings, r-bsgenome-hsapiens-ucsc-hg19,
r-doparallel, r-dplyr, r-ggbeeswarm, r-magrittr, and r-pracma.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
63c14717e3
gnu: r-somaticsignatures: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.24.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus
a471def062
gnu: r-gtrellis: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.20.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
6e397aad32
gnu: r-yamss: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
4eccf8e5e5
gnu: r-ebimage: Update to 4.30.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.30.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
e059ab2503
gnu: r-aucell: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
6314938884
gnu: r-allelicimbalance: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
231898d5b9
gnu: r-annotationtools: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.62.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
7866994c03
gnu: r-annotationfuncs: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.38.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
6a65ac1537
gnu: r-abaenrichment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
19b39ac579
gnu: r-gofuncr: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.8.0.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
a007de81e5
gnu: r-atacseqqc: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.3.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
785c759617
gnu: r-genomicscores: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.0.0.
[propagated-inputs]: Remove r-bsgenome; add r-delayedarray, r-hdf5array, and r-rhdf5.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
e6fbaf0cc7
gnu: r-motifstack: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
e65783e032
gnu: r-motifbreakr: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:54 +02:00
Ricardo Wurmus
da6a75fe00
gnu: r-motifdb: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.30.0.
[propagated-inputs]: Add r-genomicranges.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
352cfa3434
gnu: r-motiv: Update to 1.43.0.
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.43.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
6d02e17139
gnu: r-rgadem: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
7450edca0d
gnu: r-bacon: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.16.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
35bcfaefae
gnu: r-abseqr: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
b391b1e47c
gnu: r-a4: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
2a91c987fd
gnu: r-a4base: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
e47f9f48d4
gnu: r-a4reporting: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
6afea4ea93
gnu: r-a4preproc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
33c9c8563d
gnu: r-a4classif: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
4f2112add9
gnu: r-a4core: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
d200b4dc48
gnu: r-annaffy: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
500f7df840
gnu: r-mlinterfaces: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
63c8323ae9
gnu: r-clusterprofiler: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.0.
[propagated-inputs]: Remove r-ggplot2; add r-downloader and r-dplyr.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:53 +02:00
Ricardo Wurmus
43fb14cedc
gnu: r-enrichplot: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.8.1.
[propagated-inputs]: Add r-plyr and r-scatterpie.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
3a80f1cfae
gnu: r-dose: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.14.0.
[propagated-inputs]: Remove r-s4vectors.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
1dec455cb8
gnu: r-fgsea: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
b1d76ad0ca
gnu: r-sigpathway: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.56.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
8d30d59adf
gnu: r-anota: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.36.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
621cd90406
gnu: r-gosemsim: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
65e0a7b181
gnu: r-heatplus: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.34.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
f2b686f61a
gnu: r-varianttools: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.30.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
ecb4e16519
gnu: r-triform: Update to 1.29.0.
* gnu/packages/bioconductor.scm (r-triform): Update to 1.29.0.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
293fb8a147
gnu: r-ioniser: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00
Ricardo Wurmus
1465873c6c
gnu: r-linnorm: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:52 +02:00