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Author SHA1 Message Date
Ludovic Courtès
8ba94edd8f
gnu: openmpi: Add dependency on UCX when supported. 
* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally.
 2019-10-15 13:58:45 +02:00
Ludovic Courtès
da414ec687
gnu: Add ucx. 
* gnu/packages/fabric-management.scm (ucx): New variable.
 2019-10-15 13:56:41 +02:00
Ludovic Courtès
81c5873ab7
ssh: Add a longer SSH timeout by default. 
* guix/ssh.scm (open-ssh-session): Add #:timeout parameter, and add call
to 'session-set!' to honor it.
 2019-10-15 13:56:41 +02:00
Ludovic Courtès
00d7321958
offload: Set a longer SSH session timeout. 
Fixes <https://bugs.gnu.org/37762>.

* guix/scripts/offload.scm (open-ssh-session): Add 'max-silent-time'
parameter.  Add call to 'session-set!' before returning SESSION.
(transfer-and-offload): Pass MAX-SILENT-TIME to 'open-ssh-session'.
(%short-timeout): New variable.
(choose-build-machine): Pass %SHORT-TIMEOUT to 'open-ssh-session'.
(check-machine-availability): Likewise.
(check-machine-status): Likewise.
 2019-10-15 13:56:41 +02:00
Ludovic Courtès
e464ac6672
tests: Skip container test when lacking kernel support. 
This is a followup to 96b35998e6.

* tests/containers.scm ("eval/container, non-empty load path"): Add
missing 'skip-if-unsupported' call.
 2019-10-15 10:21:41 +02:00
Ludovic Courtès
062158cd7e
gnu: guix: Update to 88da011. 
* gnu/packages/package-management.scm (guix): Update to 88da011.
 2019-10-15 07:29:08 +02:00
Brian Leung
dbaa829ec6
gnu: emacs-magit: Add patch for compatibility with emacs-forge. 
* gnu/local.mk (emacs-magit-format-author-margin.patch): Add patch.
* gnu/packages/emacs-xyz.scm: Add.
* gnu/packages/patches/emacs-magit-log-format-author-margin.patch: Add.
 2019-10-14 22:04:11 -07:00
Brian Leung
ddf6e9bdb1
gnu: emacs-prescient: Update to 3.3-1.9505658. 
* gnu/packages/emacs-xyz.scm (emacs-prescient): Update to 3.3-1.9505658.
 2019-10-14 22:04:11 -07:00
Brian Leung
1695b6ca68
gnu: emacs-ghub: Update to 3.2.0-2.e19cd86. 
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0-2.e19cd86.
[propagated-inputs]: Add emacs-let-alist.
 2019-10-14 22:04:10 -07:00
Brian Leung
2254373ebd
gnu: emacs-markdown-preview: Fix synopsis. 
* gnu/packages/emacs-xyz.scm (emacs-markdown-preview): Fix synopsis.
 2019-10-14 22:04:10 -07:00
Eric Bavier
a7ba534ca6
gnu: clamav: Update to 0.102.0. 
* gnu/packages/antivirus.scm (clamav): Update to 0.102.0.
 2019-10-14 23:13:24 -05:00
Tobias Geerinckx-Rice
c78778e779
gnu: xfsprogs: Install Python script to :python output. 
* gnu/packages/linux.scm (xfsprogs)[outputs]: Add ‘python’.
[arguments]: Move ‘xfs_scrub_all’ to :python.
[inputs]: Add python-wrapper to make it actually run.
 2019-10-15 05:25:11 +02:00
Tobias Geerinckx-Rice
faa78e8850
gnu: xfsprogs: Update to 5.2.1. 
* gnu/packages/linux.scm (xfsprogs): Update to 5.2.1.
 2019-10-15 05:24:37 +02:00
Tobias Geerinckx-Rice
f920a64a74
gnu: quaternion: Wrap with extra inputs. 
* gnu/packages/messaging.scm (quaternion)[inputs]: Add qtquickcontrols2.
[arguments]: Use WRAP-QT-PROGRAM.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
5958df042c
gnu: zenity: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (zenity)[source]: Hard-code NAME.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
4f581bd068
gnu: zenity: Update to 3.32.0. 
* gnu/packages/gnome.scm (zenity): Update to 3.32.0.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
3d9a6b0512
gnu: r-cmprsk: Update to 2.2-9. 
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-9.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
34ac6089e1
gnu: r-pkgbuild: Update to 1.0.6. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.6.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
cbb488d6f6
gnu: python-git-review: Update to 1.28.0. 
* gnu/packages/openstack.scm (python-git-review): Update to 1.28.0.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
373403bb6a
gnu: python-django-override-storage: Update to 0.1.6. 
* gnu/packages/django.scm (python-django-override-storage): Update to 0.1.6.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
19181820bc
gnu: python-crate: Update to 0.23.2. 
* gnu/packages/databases.scm (python-crate): Update to 0.23.2.
 2019-10-15 05:24:36 +02:00
Eric Bavier
ed3e7b7213
gnu: pioneer: Update to 20190203. 
* gnu/packages/games.scm (pioneer): Update to 20190203.
[build-system]: Switch from gnu- to cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[inputs]: Add glew.
[arguments]: Adjust configure-flags for cmake.  Remove phase modification.
 2019-10-14 20:36:21 -05:00
Ludovic Courtès
88da011592
packages: 'fold-available-packages' uses 'supported-package?'. 
Fixes <https://bugs.gnu.org/37748>.
Reported by Marius Bakke <mbakke@fastmail.com>.

This is a followup to d2d63e20d5.

* gnu/packages.scm (fold-available-packages): Use 'supported-package?'
instead of (member ... (package-supported-systems ...)) to match what
'generate-package-cache' does.
 2019-10-14 23:43:43 +02:00
Brian Leung
914379a503
gnu: Add emacs-git-link. 
* gnu/packages/emacs-xyz.scm (emacs-git-link): New variable.
 2019-10-14 14:08:41 -07:00
Brian Leung
100f3ccb73
gnu: Add emacs-apheleia. 
* gnu/packages/emacs-xyz.scm (emacs-apheleia): New variable.
 2019-10-14 14:08:40 -07:00
Brian Leung
2322c9458c
gnu: Add emacs-git-gutter-fringe. 
* gnu/packages/emacs-xyz.scm (emacs-git-gutter-fringe): New variable.
 2019-10-14 14:08:40 -07:00
Brian Leung
36f6ed2c64
gnu: Add emacs-fringe-helper. 
* gnu/packages/emacs-xyz.scm (emacs-fringe-helper): New variable.
 2019-10-14 14:08:40 -07:00
Ricardo Wurmus
19e4261837
gnu: Add methyldackel. 
* gnu/packages/bioinformatics.scm (methyldackel): New variable.
 2019-10-14 22:49:04 +02:00
Efraim Flashner
dc505e3eb8
gnu: vim-fugitive: Update to 3.1. 
* gnu/packages/vim.scm (vim-fugitive): Update to 3.1.
 2019-10-14 20:44:02 +03:00
Tobias Geerinckx-Rice
c7c23eb622
gnu: ddcutil: Update to 0.9.7. 
* gnu/packages/hardware.scm (ddcutil): Update to 0.9.7.
 2019-10-14 19:38:44 +02:00
Tobias Geerinckx-Rice
ef68b35da9
gnu: python-py3status: Update to 3.21. 
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.21.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice
53a3ebed68
gnu: python-colorspacious: Update to 1.1.2. 
* gnu/packages/python-xyz.scm (python-colorspacious): Update to 1.1.2.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice
4df49d1968
gnu: python-glob2: Update to 0.7. 
* gnu/packages/python-xyz.scm (python-glob2): Update to 0.7.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice
8e45ec509e
gnu: sqitch: Remove perl-file-homedir input. 
* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir.
 2019-10-14 19:33:18 +02:00
Efraim Flashner
303469d69e
gnu: Add enlightenment-wayland. 
* gnu/packages/enlightenment.scm (enlightenment-wayland): New variable.
 2019-10-14 20:07:35 +03:00
Ludovic Courtès
29ea9e14ee
gnu: gtkmm: Update to 3.24.1. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.24.1.
 2019-10-14 18:25:31 +02:00
Ludovic Courtès
7a6bbe9b68
gnu: gspell: Update to 1.8.2. 
* gnu/packages/gnome.scm (gspell): Update to 1.8.2.
 2019-10-14 18:25:31 +02:00
Ludovic Courtès
a00a946ac5
gnu: gfortran: Add version 9.x. 
* gnu/packages/gcc.scm (gfortran-9): New variable.
 2019-10-14 18:25:31 +02:00
Maurice Brémond
06e1239502
gnu: mumps: Build and install shared libraries. 
* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support.  In 'install' phase, install libmpiseq.so when it
exists.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Maurice Brémond
5dbc79eb60
gnu: mumps: Update to 5.2.1. 
* gnu/packages/maths.scm (mumps): Update to 5.2.1.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Ricardo Wurmus
b06cdce923
gnu: Add r-velocyto. 
* gnu/packages/bioinformatics.scm (r-velocyto): New variable.
 2019-10-14 18:22:46 +02:00
Ricardo Wurmus
40be965e28
gnu: Add r-phastcons100way-ucsc-hg19. 
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
 2019-10-14 18:09:37 +02:00
Pierre Neidhardt
14db074e28
gnu: Add emacs-sly-package-inferred. 
* gnu/packages/emacs-xyz.scm (emacs-sly-package-inferred): New variable.
 2019-10-14 18:00:33 +02:00
Pierre Neidhardt
de36efc2e0
gnu: Add emacs-sly-macrostep. 
* gnu/packages/emacs-xyz.scm (emacs-sly-macrostep): New variable.
 2019-10-14 18:00:32 +02:00
Pierre Neidhardt
b0cf64c0bc
gnu: Add emacs-sly-named-readtables. 
* gnu/packages/emacs-xyz.scm (emacs-sly-named-readtables): New variable.
 2019-10-14 18:00:32 +02:00
Pierre Neidhardt
6078c0043d
gnu: emacs-sly-asdf: Update to 20191013. 
* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20191013.
 2019-10-14 18:00:32 +02:00
Stephen Webber
534610d820
gnu: Add emacs-dimmer. 
* gnu/packages/emacs-xyz.scm (emacs-dimmer): New variable.
 2019-10-14 17:19:54 +02:00
Tobias Geerinckx-Rice
8c26b18453
gnu: sudo: Update to 1.8.28 [fixes CVE-2019-14287]. 
* gnu/packages/admin.scm (sudo): Update to 1.8.28.
 2019-10-14 17:14:46 +02:00
Tobias Geerinckx-Rice
41cc799357
gnu: r-fields: Use HTTPS home-page. 
* gnu/packages/cran.scm (r-fields)[home-page]: Use HTTPS.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice
e96a56f62d
gnu: r-fields: Update to 9.9. 
* gnu/packages/cran.scm (r-fields): Update to 9.9.
 2019-10-14 17:14:45 +02:00