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Author SHA1 Message Date
Ricardo Wurmus
946fd9be16
gnu: stringtie: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (stringtie): Update to 2.2.0.
[source]: Simplify snippet.
[arguments]: Add make-flags; update build phases.
[inputs]: Remove samtools-0.1; add bzip2, htslib-for-stringtie, and
libdeflate.
[license]: Change to Expat license.
 2022-01-11 14:19:54 +01:00
Ricardo Wurmus
9966f98b1b
gnu: Add htslib-for-stringtie. 
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable.
* gnu/packages/patches/htslib-for-stringtie.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-01-11 14:19:53 +01:00
Ricardo Wurmus
5b200dbfb0
gnu: python-yubikey-manager: Update to 4.0.7. 
* gnu/packages/security-token.scm (python-yubikey-manager): Update to 4.0.7.
[arguments]: Remove build phase customization; disable tests.
[inputs]: Remove yubikey-personalization and libusb.
 2022-01-11 14:19:53 +01:00
Ricardo Wurmus
03a08418fd
gnu: python-fido2: Update to 0.9.3. 
* gnu/packages/security-token.scm (python-fido2): Update to 0.9.3.
[source]: Do not use gexp for snippet.
[arguments]: Disable tests; remove trailing #T from build phase.
 2022-01-11 14:19:53 +01:00
Attila Lendvai
a485e1e663
gnu: Add gpaste. 
* gnu/packages/gnome-xyz.scm (gpaste): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 11:16:51 +01:00
Greg Hogan
4b8a5205a6
gnu: Add python-pystitcher. 
* gnu/packages/python-xyz.scm (python-pystitcher): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:54:39 +01:00
Greg Hogan
732180015b
gnu: Add python-pypdf3. 
* gnu/packages/python-xyz.scm (python-pypdf3): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:50:53 +01:00
Greg Hogan
69f8892860
gnu: python-validators: Update to 0.18.2. 
* gnu/packages/python-xyz.scm (python-validators): Update to 0.18.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:47:40 +01:00
Felix Gruber
80f616139c
gnu: dealii: Update to 9.3.2. 
* gnu/packages/maths.scm (dealii): Update to 9.3.2.
  [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and
  dealii-fix-sundials.patch.
  [inputs]: Use simplified format.
  [native-inputs]: Use simplified format.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
  New file.
* gnu/packages/patches/dealii-fix-sundials.patch: New file.
* gnu/local.mk: Add new patch files.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:43:47 +01:00
Felix Gruber
f499f62941
gnu: reuse: Update to 0.14.0. 
* gnu/packages/license.scm (reuse): Update to 0.14.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:41:22 +01:00
Vinicius Monego
fb668d7604
gnu: Add emacs-org-transclusion. 
* gnu/packages/emacs-xyz.scm (emacs-org-transclusion): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:39:04 +01:00
Nicolas Goaziou
a7478b1ca0
gnu: notmuch: Simplify inputs. 
* gnu/packages/mail.scm (notmuch)[native-inputs]: Remove labels.
 2022-01-11 10:34:16 +01:00
Nicolas Goaziou
509ef2125d
gnu: notmuch: Update to 0.34.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.34.3.
 2022-01-11 10:32:46 +01:00
Nicolas Goaziou
3be459c5e7
gnu: emacs-keycast: Update to 1.1.2. 
* gnu/packages/emacs-xyz.scm (emacs-keycast): Update to 1.1.2.
 2022-01-11 10:14:27 +01:00
Nicolas Goaziou
566fec34de
gnu: emacs-org-fragtog: Update to 0.4.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-fragtog): Update to 0.4.1.
 2022-01-11 10:11:33 +01:00
Nicolas Goaziou
474f97a150
gnu: emacs-posframe: Update to 1.1.6. 
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.1.6.
 2022-01-11 10:02:10 +01:00
Christopher Baines
fe58f05b24
gnu: guix-build-coordinator: Update to 0-47.048c609. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-47.048c609.
 2022-01-11 08:13:50 +00:00
Arun Isaac
c1f8dffa54
services: laminar: Set LAMINAR_BIND_RPC environment variable. 
Earlier, the bind-rpc field of <laminar-configuration> was not used at
all. This was a bug.

* gnu/services/ci.scm (laminar-shepherd-service): Use bind-rpc to set
LAMINAR_BIND_RPC environment variable.
 2022-01-11 11:47:42 +05:30
Vinicius Monego
537f4a1ef1
gnu: handbrake: Update to 1.5.1. 
* gnu/packages/video.scm (handbrake): Update to 1.5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-11 00:29:07 -05:00
Michael Rohleder
8bf84d4fc6
gnu: hydrogen: Update to 1.1.1. 
* gnu/packages/music.scm (hydrogen): Update to 1.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-11 00:29:07 -05:00
Michael Rohleder
8940fa3d76
gnu: strawberry: Update to 1.0.1. 
* gnu/packages/music.scm (strawberry): Update to 1.0.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-11 00:29:07 -05:00
Tobias Geerinckx-Rice
83abdc8371
doc: Update ‘guix home search’ output sample. 
The old output differs greatly from the current one and contains a typo.

* doc/guix.texi (Invoking guix home): Update ‘guix home search’ output
sample.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
0225e5a43b
gnu: kcov: Edit description. 
* gnu/packages/code.scm (kcov)[description]: Remove operating systems.
Edit slightly.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
b834f73bc7
gnu: kcov: Update to 40. 
* gnu/packages/code.scm (kcov): Update to 40.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
746e590d4a
doc: Fix typos. 
* doc/guix.texi (Home Services, Essential Home Services)
(Shells Home Services): Fix ‘avaliable’ typo, & grammar.
(Using the Configuration System): Fix another typo.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
13f4c905b2
gnu: chez-scheme: Update to 9.5.6. 
* gnu/packages/chez.scm (chez-scheme): Update to 9.5.6.
[source]: Remove patch.
[arguments]: Don't explicitly return #t from phases.
* gnu/packages/patches/chez-scheme-build-util-paths-backport.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
df20a46a0e
gnu: astroid: Remove input labels. 
* gnu/packages/mail.scm (astroid)[inputs]:
Remove input labels.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
35d606f8f1
gnu: astroid: Fix build. 
* gnu/packages/mail.scm (astroid)[inputs]: Substitute webkitgtk-with-libsoup2
for webkitgtk.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
b3aa712f92
gnu: libsoup-minimal: Update to 3.0.4. 
* gnu/packages/gnome.scm (libsoup-minimal): Update to 3.0.4.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
ac5abaff42
gnu: ii: Update to 1.9. 
* gnu/packages/irc.scm (ii): Update to 1.9.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
e9f210a0d0
gnu: eg25-manager: Update to 0.4.2. 
* gnu/packages/firmware.scm (eg25-manager): Update to 0.4.2.
 2022-01-09 21:58:34 +01:00
Tobias Geerinckx-Rice
c18b9d3d4c
gnu: diffoscope: Update to 199. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 199.
 2022-01-09 21:58:34 +01:00
Leo Famulari
253ce9f71d
gnu: Go 1.17: Update to 1.17.6. 
* gnu/packages/golang.scm (go-1.17): Update to 1.17.6.
 2022-01-10 14:18:34 -05:00
Leo Famulari
7d70ac92fc
gnu: Go 1.16: Update to 1.16.13. 
* gnu/packages/golang.scm (go-1.16): Update to 1.16.13.
 2022-01-10 14:18:34 -05:00
Marius Bakke
4b4ea1669d
gnu: ungoogled-chromium: Convert arguments to G-expression. 
* gnu/packages/chromium.scm (ungoogled-chromium)[native-inputs]: Remove
the "master-preferences" gexp input.  Remove all labels.
[arguments]: Convert to gexp.  Inline the above-mentioned gexp.  Remove one
usage of "gcc" label while at it.
 2022-01-10 20:11:12 +01:00
Marius Bakke
f6134ca5ff
gnu: ungoogled-chromium: Remove obsolete compiler flags. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Don't set CFLAGS
and CXXFLAGS, as the build system already does the right thing.
 2022-01-10 20:11:12 +01:00
Marius Bakke
169df87603
gnu: ungoogled-chromium: Remove obsolete substitution. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove substitution.
 2022-01-10 20:11:12 +01:00
Marius Bakke
23adb414fd
gnu: ungoogled-chromium: Remove input labels. 
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Remove labels.
[arguments]: Use SEARCH-INPUT-FILE & co as appropriate.
 2022-01-10 20:11:12 +01:00
Ludovic Courtès
1b87dc2f2a
doc: Use @lisp and clarify 'setuid-program' examples. 
* doc/guix.texi (Setuid Programs): Use @lisp instead of @example.  Add
scope for the 'setuid-programs' field snippet.
 2022-01-10 19:31:03 +01:00
Ludovic Courtès
9a112a8fe1
news: Fix typos in French text. 
* etc/news.scm: Fix typos.
 2022-01-10 19:31:03 +01:00
Ludovic Courtès
c1aa0ee9bd
guix hash: Allow '-r' as a non-deprecated alias. 
This is a followup to 05c962594c.

Discussed at <https://issues.guix.gnu.org/51307#24>.

* guix/scripts/hash.scm (%options): Warn about deprecation for
"--recursive", but not for '-r' as it's a convenient shorthand.  Mention
'--serializer=nar' in the deprecation message.
* doc/guix.texi (Invoking guix hash): Adjust accordingly.
 2022-01-10 19:31:02 +01:00
Ludovic Courtès
611989d1d6
doc: Fix typo. 
* doc/guix.texi (Invoking guix style): Fix typo.
 2022-01-10 19:31:02 +01:00
Mathieu Othacehe
d91de53caa
gnu: i2c-tools: Fix cross-compilation. 
* gnu/packages/linux.scm (i2c-tools)[arguments]: Use #$output to fix
cross-compilation.
 2022-01-10 17:29:19 +01:00
Danny Milosavljevic
c78f916a46
gnu: Add xfel. 
* gnu/packages/admin.scm (xfel): New variable.
 2022-01-10 15:29:23 +01:00
Ludovic Courtès
0976e92a0f
news: Add news entry about 'guix style'. 
* etc/news.scm: Add entry.
 2022-01-10 15:01:30 +01:00
Ludovic Courtès
5d9a5e2301
style: '-S format' canonicalizes comments. 
* guix/scripts/style.scm (canonicalize-comment): New procedure.
(pretty-print-with-comments): Add #:format-comment. and honor it.
(object->string*): Add 'args' and honor them.
(format-package-definition): Pass #:format-comment to
'object->string*'.
* tests/style.scm ("pretty-print-with-comments, canonicalize-comment"):
New test.
 2022-01-10 14:59:26 +01:00
Ludovic Courtès
c4fe13c294
style: Add '--styling' option. 
* guix/scripts/style.scm (format-package-definition): New procedure.
(%options, show-help): Add "--styling".
(%default-options): Add 'styling-procedure'.
(guix-style): Honor it.
* tests/style.scm (with-test-package)
("input labels, 'safe' policy")
("input labels, 'safe' policy, nothing changed")
("input labels, margin comment")
("input labels, margin comment on long list")
("input labels, line comment")
("input labels, modify-inputs and margin comment"): Pass "-S inputs".
* etc/indent-code.el: Remove.
* doc/contributing.texi (Formatting Code): Mention "guix style" instead
of "etc/indent-code.el".
(Submitting Patches): Add item for "guix style".
* doc/guix.texi (Invoking guix style): Document "-S" and update.
 2022-01-10 14:59:26 +01:00
Ludovic Courtès
6f892630ae
style: Add support for "newline forms". 
This allows us to express cases where a newline should be inserted
immediately after the head symbol of a list.

* guix/scripts/style.scm (%newline-forms): New variable.
(newline-form?): New procedure.
(pretty-print-with-comments): Handle "newline forms".
* tests/style.scm: Add test.
 2022-01-10 14:59:18 +01:00
Ludovic Courtès
208a7aa17b
style: Allow special forms to be scoped. 
* guix/scripts/style.scm (vhashq): Add clause for 'lst, and change
default clause.
(%special-forms): Add context for 'add-after and 'add-before.  Add
'replace.
(prefix?, special-form-lead): New procedures.
(special-form?): Remove.
(pretty-print-with-comments): Add 'context' to the threaded state.
Adjust 'print-sequence' and adjust 'loop' calls accordingly.
* tests/style.scm: Add tests for 'replace.
 2022-01-10 14:25:59 +01:00
Ludovic Courtès
97d0055edb
style: Improve pretty printer and add tests. 
* guix/scripts/style.scm (vhashq): New macro.
(%special-forms): New variable.
(special-form?): New procedure.
(pretty-print-with-comments): Add many clauses and tweak existing
rules.
* tests/style.scm (test-pretty-print): New macro.
<top level>: Add 'test-pretty-print' tests.
 2022-01-10 14:25:59 +01:00