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Author SHA1 Message Date
Ricardo Wurmus
94f9c0cdc4
gnu: python-gffutils: Update description. 
* gnu/packages/bioinformatics.scm (python-gffutils)[description]: Reflow
paragraph and fix spelling of SQLite.
 2019-12-16 23:32:55 +01:00
Mădălin Ionel Patrașcu
cfd83f3282
gnu: Add python-gffutils. 
* gnu/packages/bioinformatics.scm (python-gffutils): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-16 23:27:00 +01:00
Ricardo Wurmus
b7716f1b39
gnu: Remove python2-dask. 
This package can no longer be built with Python 2.

* gnu/packages/python-xyz.scm (python2-dask): Remove variable.
 2019-12-16 23:22:12 +01:00
Ricardo Wurmus
86c7ca07aa
gnu: python-dask: Update to 2.9.0. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2.9.0.
[arguments]: Adjust phase to disable broken tests.
[propagated-inputs]: Add python-fsspec and python-packaging.
 2019-12-16 23:22:12 +01:00
Ricardo Wurmus
c70a019137
gnu: Add python-fsspec. 
* gnu/packages/python-xyz.scm (python-fsspec): New variable.
 2019-12-16 23:22:12 +01:00
Mădălin Ionel Patrașcu
4ade2dd9d2
gnu: python-pyfaidx: Update to 0.5.7. 
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.7.
 2019-12-16 23:22:12 +01:00
Christopher Baines
27d083433a
gnu: guix-data-service: Update to 0.0.1-8.a019a5e. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-8.a019a5e.
 2019-12-16 21:00:46 +00:00
Brett Gilio
1171c4b3c0
Revert "gnu: ccls: Configure using -isystem for header files." 
This reverts commit 2c82d4ad10.
 2019-12-16 14:05:17 -06:00
Brett Gilio
792c3db553
Revert "gnu: ccls: Adjust indentation" 
This reverts commit 3c80b07a0b.
 2019-12-16 14:04:59 -06:00
Mădălin Ionel Patrașcu
db6bd842aa
gnu: Add python-argh. 
* gnu/packages/python-xyz.scm (python-argh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-16 17:30:33 +01:00
Mădălin Ionel Patrașcu
dbcef44a0b
gnu: Add python-iocapture. 
* gnu/packages/python-xyz.scm (python-iocapture): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-16 17:27:03 +01:00
Jan Nieuwenhuizen
d0a26d0be9
gnu: gash: Update to 0.2.0. 
* gnu/packages/shells.scm (gash): Update to 0.2.0.
 2019-12-16 17:06:07 +01:00
Mathieu Othacehe
46429444d6
gnu: psmisc: Fix cross-compilation. 
* gnu/packages/linux.scm (psmisc)[arguments]: Pass
ac_cv_func_malloc_0_nonnull=yes and ac_cv_func_realloc_0_nonnull=yes options
that are required when cross-compiling.
 2019-12-16 16:45:34 +01:00
Mathieu Othacehe
88ca4029a6
gnu: iw: Fix cross-compilation. 
* gnu/packages/linux.scm (iw)[arguments]: Set PKG_CONFIG and CC variables
correctly for cross-compilation.
 2019-12-16 16:19:39 +01:00
Ricardo Wurmus
c6a7fe7937
gnu: yoshimi: Update to 1.6.1. 
* gnu/packages/music.scm (yoshimi): Update to 1.6.1.
 2019-12-16 15:43:31 +01:00
Pierre Neidhardt
709f839c20
gnu: emacs-helm-fish-completion: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): Update to 0.2.
 2019-12-16 15:35:40 +01:00
Mathieu Othacehe
8c4c5bf86a
Revert "gnu: info-reader: Fix cross-compilation." 
This reverts commit 614a1e3fa2.
This is broken on master with the following error:

output (`/gnu/store/6rnhfi8zrdajbahbq9ii8bpj7mwfcjba-info-reader-6.6') is not
allowed to refer to path
`/gnu/store/ziinjmbnq004866mwjrczsk12wf35qb8-perl-5.30.0' build of
/gnu/store/nnfvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv failed View
build log at
'/var/log/guix/drvs/nn/fvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv.bz2'.
 2019-12-16 15:08:08 +01:00
Efraim Flashner
d0ef3a0048
gnu: libreoffice: Update to 6.3.4.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.3.4.2.
 2019-12-16 14:13:16 +02:00
Ricardo Wurmus
223236f6c2
gnu: guile-studio: Update to 0.0.2. 
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0.0.2.
[arguments]: Only include emacs inputs in INPUTS make flag.
 2019-12-16 08:04:18 +01:00
Brett Gilio
3c80b07a0b
gnu: ccls: Adjust indentation 
* gnu/packages/cpp.scm (ccls): Adjust indentation.
 2019-12-16 00:10:14 -06:00
Brett Gilio
2c82d4ad10
gnu: ccls: Configure using -isystem for header files. 
* gnu/packages/cpp.scm (ccls): Configure using -isystem for header files.
[arguments]: Use GCC as a build input for preprocessing and searching GCC
subdirectories, this provides better support for header file completion on
runtime.
[inputs]: Add ncurses for command-line support. Remove LLVM, it is not needed.
[native-inputs]: Move rapidjson from inputs to native-inputs, add GCC.
 2019-12-16 00:06:05 -06:00
Alexandros Theodotou
90ee17cdac
gnu: Add python-sphinx-intl 
* gnu/packages/sphinx.scm (python-sphinx-intl): New variable.

Signed-off-by: Brett Gilio <brettg@posteo.net>
 2019-12-15 22:53:50 -06:00
Nicolas Goaziou
00386d3430
gnu: Add emacs-eww-lnum. 
* gnu/packages/emacs-xyz.scm (emacs-eww-lnum): New variable.
 2019-12-15 23:33:06 +01:00
Ricardo Wurmus
e703f6d8ef
gnu: Add pinfo. 
* gnu/packages/texinfo.scm (pinfo): New variable.
 2019-12-15 23:12:56 +01:00
Ricardo Wurmus
34982a4622
gnu: r-quantreg: Update to 5.54. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.54.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
155d48f6c6
gnu: r-glmnet: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-glmnet): Update to 3.0-2.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
468fb90fdd
gnu: r-sparsem: Update to 1.78. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.78.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
804e0682bf
gnu: r-segmented: Update to 1.1-0. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.1-0.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
d2d7259b47
gnu: r-rmarkdown: Update to 2.0. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.0.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
6c2887e6b2
gnu: r-dbi: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.0.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
2947e330da
gnu: r-plyr: Update to 1.8.5. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.5.
[native-inputs]: Move r-rcpp from here...
[propagated-inputs]: ...to here.
 2019-12-15 23:12:04 +01:00
Ricardo Wurmus
a2e3f27e1f
gnu: r-nlme: Update to 3.1-143. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-143.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
074c698e72
gnu: r-spam: Update to 2.5-1. 
* gnu/packages/cran.scm (r-spam): Update to 2.5-1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
126f027b99
gnu: r-tidytree: Update to 0.3.1. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
5f99ffb013
gnu: r-tm: Update to 0.7-7. 
* gnu/packages/cran.scm (r-tm): Update to 0.7-7.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
b744174e7d
gnu: r-fmsb: Update to 0.7.0. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.0.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
d4e8f20705
gnu: r-lmertest: Update to 3.1-1. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
afc1ff2f08
gnu: r-performance: Update to 0.4.2. 
* gnu/packages/cran.scm (r-performance): Update to 0.4.2.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
f92c0c1efc
gnu: r-multcomp: Update to 1.4-11. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-11.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
31fa45b679
gnu: r-deriv: Update to 4.0. 
* gnu/packages/cran.scm (r-deriv): Update to 4.0.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
cceb86f982
gnu: r-rdpack: Update to 0.11-1. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-1.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
98ce8a31f0
gnu: r-renv: Update to 0.9.2. 
* gnu/packages/cran.scm (r-renv): Update to 0.9.2.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
2beb585c8d
gnu: r-sna: Update to 2.5. 
* gnu/packages/cran.scm (r-sna): Update to 2.5.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
a8e8a10a76
gnu: r-tinytex: Update to 0.18. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.18.
 2019-12-15 23:12:03 +01:00
Ricardo Wurmus
c79e80f81b
gnu: r-mice: Update to 3.7.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.7.0.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
a3b51a34f4
gnu: r-broom: Update to 0.5.3. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.3.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
c9a0f61069
gnu: r-rmysql: Update to 0.10.18. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.18.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
3dc1d43300
gnu: r-amap: Update to 0.8-18. 
* gnu/packages/cran.scm (r-amap): Update to 0.8-18.
 2019-12-15 23:12:02 +01:00
Ricardo Wurmus
0128a9df8f
gnu: r-rgooglemaps: Update to 1.4.5. 
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.
 2019-12-15 23:12:02 +01:00
Brett Gilio
e67118adb4
gnu: Add emacs-hide-mode-line. 
* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): New variable.
 2019-12-15 16:02:43 -06:00