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11416 commits

Author SHA1 Message Date
Ludovic Courtès
322bb53c7a import: snix: Use the right 'package-name->name+version'.
Fixes a regression introduced in
1b846da8c3.

* guix/import/snix.scm: Use 'package-name->name+version' from (guix
build utils).
2016-03-06 23:16:35 +01:00
Ricardo Wurmus
afadb05e58 gnu: alsa-modular-synth: Insert space to separate linker flags.
* gnu/packages/audio.scm (alsa-modular-synth)[arguments]: Add build
phase to separate linker flags.
2016-03-06 21:17:05 +01:00
Ricardo Wurmus
ee6a88b118 gnu: alsa-modular-synth: Drop Qt 4.
* gnu/packages/audio.scm (alsa-modular-synth)[inputs]: Replace "qt-4"
with "qt".
[arguments]: Add configure flag to build with Qt 5.
2016-03-06 21:17:05 +01:00
Ludovic Courtès
59a4dd509b doc: Explain how to check whether security updates are used.
Based on
<https://lists.gnu.org/archive/html/guix-devel/2016-03/msg00009.html>.

* doc/guix.texi (Security Updates): Explain how to check whether we're
using a grafted version.
2016-03-05 22:53:40 +01:00
Ludovic Courtès
dd78e90a4d store: 'references/substitutes' correctly handles the order of substitutes.
Before that, 'references/substitutes' would assume that
'substitutable-path-info' would return things in the same order as its
arguments, which is not the case.  Thus, it would sometimes provide
incorrect reference information, occasionally leading to infinite
loop (because dependency information would denote cycles.)

Fixes <http://bugs.gnu.org/22914>.
Reported by Eric Bavier <ericbavier@openmailbox.org>.

* guix/store.scm (references/substitutes): Make ITEMS the first argument
of the loop; match on it.  Use 'any' to find a matching substitute.
(substitutable-path-info): Clarify docstring about ordering.
2016-03-05 22:53:40 +01:00
Andreas Enge
451b5c5dc6 gnu: vigra: Update to a development snapshot.
* gnu/packages/image.scm (vigra): Update to a git snapshot to fix build
  problems with the current python-numpy.
2016-03-05 19:09:42 +01:00
Andreas Enge
d7c4619bd1 gnu: Add einstein.
* gnu/packages/games.scm (einstein): New variable.
* gnu/packages/patches/einstein-build.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
2016-03-05 18:44:43 +01:00
Andreas Enge
1068f26b79 doc: Typos and small stylistic changes.
* guix.texi: Correct typos and make minor changes.
2016-03-05 16:27:35 +01:00
Andreas Enge
03d55eeca7 gnu: jalv: Drop Qt-4 support.
* gnu/packages/audio.scm (jalv)[inputs]: Drop qt-4. It does not receive any
  upstream security updates, and Qt-4 support is marked as experimental in
  the jalv documentation.
2016-03-05 12:20:09 +01:00
Ludovic Courtès
b4c42a4b07 tests: Disable tests that would rebuild the world due to grafting.
The Perl replacement added in d8173f2 leads some tests to involve
grafting, which in turn triggers derivation builds that rebuild the
world.  Work around that.

* tests/packages.scm: Add call to '%graft?'.
("package-derivation, direct graft")
("package-cross-derivation, direct graft"): Comment out.
2016-03-05 00:19:10 +01:00
Ludovic Courtès
d4da602e4c grafts: Memoize intermediate results in 'cumulative-grafts'.
The time for:

  guix build inkscape -n --no-substitutes

goes down by 30% (in the presence of 3 replacements among all the
packages.)

* guix/grafts.scm (cumulative-grafts): Turn into a monadic procedure in
%STATE-MONAD.  Use the current state as a derivation-to-graft cache.
(graft-derivation): Call 'cumulative-grafts' within 'run-with-state'.
2016-03-05 00:19:10 +01:00
Ludovic Courtès
fcadd9ff9d packages: The result of 'bag-grafts' does not contain duplicates.
* guix/packages.scm (bag-grafts): Add call to 'delete-duplicates'.
2016-03-05 00:19:10 +01:00
Ludovic Courtès
c90cb5c9d8 grafts: Use dependency information from substitutes when possible.
This avoids starting derivation builds just for the sake of knowing the
references of their outputs, thereby restoring the expected behavior of
--dry-run when substitutes are available.

* guix/grafts.scm (non-self-references): Remove 'store' parameter, and
add 'references'.  Use it.  Update caller.
(references-oracle): New variable.
(cumulative-grafts): Add 'references' parameter and use it.  Update
callers.
(graft-derivation): Remove 'build-derivations' call.  Add call to
'references-oracle'.
2016-03-05 00:19:10 +01:00
Ludovic Courtès
6581ec9ab9 store: Add 'references/substitutes'.
* guix/store.scm (references/substitutes): New procedure.
* tests/store.scm ("references/substitutes missing reference info")
("references/substitutes with substitute info"): New tests.
2016-03-05 00:19:10 +01:00
Ludovic Courtès
7bfeb9df20 tests: Narinfos can specify an non-empty reference list.
* guix/tests.scm (derivation-narinfo): Add #:references and honor it.
(call-with-derivation-narinfo, call-with-derivation-substitute):
Likewise.
(with-derivation-narinfo, with-derivation-substitute): Add 'references'
keyword.
2016-03-05 00:19:10 +01:00
Ludovic Courtès
c8f9f24776 guix build: Set the build options early.
This fixes a bug whereby, with grafts leading to builds very early,
build options such as --substitute-urls would not be taken into account
yet.

Reported by Andreas Enge <andreas@enge.fr>.

* guix/scripts/build.scm (guix-build): Move 'opts' to the beginning.
Use 'with-store' instead of 'open-connection'.  Call
'set-build-options-from-command-line' right after 'with-store'.
2016-03-05 00:19:10 +01:00
Leo Famulari
eda0522aab gnu: letsencrypt, python-acme: Update to 0.4.2.
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.4.2.
(python-acme, python2-acme): Update to 0.4.2.
2016-03-04 18:10:00 -05:00
Leo Famulari
65f1b8a591 gnu: python-cryptography, python-cryptography-vectors: Update to 1.2.3.
These packages should be updated together.

* gnu/packages/python.scm (python-cryptography): Update to 1.2.3.
(python-cryptography-vectors): Update to 1.2.3.
2016-03-04 18:09:20 -05:00
Ludovic Courtès
44abcb2868 doc: Mention syslogd configuration.
* gnu/services/base.scm (syslog-service): Add xref to Inetutils in the
docstring.
(%default-syslog.conf): Export.
* doc/guix.texi (Base Services): Update accordingly.
2016-03-04 11:48:52 +01:00
Ludovic Courtès
4ce783a2f9 lint: cve: Gracefully handle HTTP errors.
* guix/scripts/lint.scm (current-vulnerabilities*): New procedure.
(package-vulnerabilities): Use it.
2016-03-04 11:48:52 +01:00
Ludovic Courtès
fe4e698d77 gnu: gnome: Sync description and synopsis.
* gnu/packages/gnome.scm (gnome)[synopsis, description]: Use official
GNU blurb.
2016-03-04 11:48:52 +01:00
Ludovic Courtès
ffaf83dfb1 gnu: nano: Update to 2.5.3.
* gnu/packages/nano.scm (nano): Update to 2.5.3.
2016-03-04 11:48:52 +01:00
Ludovic Courtès
4978ffcfc2 gnu: libgit2: Update to 0.23.4.
* gnu/packages/version-control.scm (libgit2): Update to 0.23.4.
2016-03-04 11:48:52 +01:00
Ludovic Courtès
9c7e7eadfa gnu: findnewest: Update to 0.3.
* gnu/packages/version-control.scm (findnewest): Update to 0.3.
2016-03-04 11:48:52 +01:00
Alex Kost
db0c709b9a emacs: Use '@' to separate package names and version numbers.
This is a followup to commit 1b846da8c3.

* emacs/guix-base.el (guix-package-name-specification): Use "@" instead
of "-".
* emacs/guix-main.scm (name+version->full-name): Likewise.
(package-inputs-names): Use 'make-package-specification' instead of
'package-full-name'.
(full-name->name+version): Update the docstring.
* emacs/guix-ui-package.el (guix-packages-by-name): Likewise.
2016-03-04 13:17:36 +03:00
Alex Kost
b8fa5a2ae8 emacs: hydra: Use '-' to separate job names and version numbers.
* emacs/guix-hydra.el (guix-hydra-job-name-specification): New procedure.
* emacs/guix-ui-package.el (guix-package-info-insert-systems)
(guix-package-list-latest-builds): Use it.
2016-03-04 13:17:36 +03:00
Leo Famulari
c7658f8f2c gnu: exim: Update to 4.86.2 [fixes CVE-2016-1531].
* gnu/packages/mail.scm (exim): Update to 4.86.2.
2016-03-03 20:38:47 -05:00
David Thompson
4a52671131 gnu: Add byzanz.
* gnu/packages/gnome.scm (byzanz): New variable.
2016-03-03 20:23:07 -05:00
Ludovic Courtès
abd678565e doc: Improve Info categories.
* doc/guix.texi: Change main category to "System administration".  Fix
syntax of subnodes.  Add entries for 'guix pull' and 'guix gc'.  Add
"Emacs" category.
2016-03-03 23:54:36 +01:00
Ludovic Courtès
5c7e1a3270 build: Use (guix grafts) as needed.
This is a followup to 7adf9b8.

* build-aux/check-final-inputs-self-contained.scm: Use (guix grafts).
* build-aux/check-available-binaries.scm: Likewise.
2016-03-03 23:54:36 +01:00
Efraim Flashner
50b66bf1b0 gnu: youtube-dl: Update to 2016.03.01.
* gnu/packages/video.scm (youtube-dl): Update to 2016.03.01.
2016-03-03 22:55:46 +02:00
Efraim Flashner
581873b55d gnu: mpv: Update to 0.16.0.
* gnu/packages/video.scm (mpv): Update to 0.16.0.
2016-03-03 22:53:37 +02:00
Leo Famulari
d8173f21f7 gnu: perl: Replace with patched version [fixes CVE-2016-2381].
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl-fixed): New variable.
* gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
2016-03-03 14:56:23 -05:00
Efraim Flashner
7b3f2682de gnu: irssi: Support proxy, socks, bot.
* gnu/packages/irc.scm (irssi)[arguments]: Add configure flags to
support proxy, socks and bot.
2016-03-03 19:04:31 +02:00
Efraim Flashner
fd41741bdc gnu: irssi: Update to 0.8.18.
* gnu/packages/irc.scm (irssi): Update to 0.8.18.
[source]: Update uri.
2016-03-03 19:04:31 +02:00
Ludovic Courtès
7016184245 build: Build (guix import github) only when Guile-JSON is available.
Reported by Justus Winter <justus@gnupg.org>.

* Makefile.am (MODULES): Add guix/import/github.scm only when
HAVE_GUILE_JSON.
2016-03-03 17:46:58 +01:00
Justus Winter
8a56a3d7a3 po: Drop removed file 'weechat.scm'.
Fixes <http://bugs.gnu.org/22888>.
weechat has been merged into 'irc.scm' in e288f007.

* po/packages/POTFILES.in: Drop removed file 'weechat.scm'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-03-03 17:42:47 +01:00
Petter
d0a65256a3 system: GRUB menu entry says "beta" instead of "alpha"
* gnu/system.scm (kernel->grub-label): Change "alpha" to "beta'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-03-03 17:42:47 +01:00
Ludovic Courtès
16cc99610d system: Add rfkill to '%base-packages'.
* gnu/system.scm (%base-packages): Add RFKILL.
2016-03-03 17:42:47 +01:00
Ricardo Wurmus
649e9b3b47 gnu: python-pysam: Move cython and setuptools to native inputs.
* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move
"python-cython" and "python-setuptools" from here...
[native-inputs]: ... to here.
2016-03-03 13:47:19 +01:00
Ricardo Wurmus
3acb8c857c gnu: deeptools: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1.
[inputs]: Add "python2-numpydoc" and "python2-pybigwig".
2016-03-03 13:47:12 +01:00
Ricardo Wurmus
14bda1ff49 gnu: deeptools: Change "propagated-inputs" to "inputs".
* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move
all inputs from here...
[inputs]: ...to here.
2016-03-03 13:47:02 +01:00
Ricardo Wurmus
69e0e03c36 gnu: Add python-pybigwig.
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig):
  New variables.
2016-03-03 13:46:52 +01:00
Ricardo Wurmus
d454640c38 gnu: python-pysam: Update to 0.8.4.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4.
2016-03-03 13:46:39 +01:00
Ricardo Wurmus
55a9a8c2b9 gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.
* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
2016-03-03 13:46:26 +01:00
Ludovic Courtès
937690f909 lint: derivation: Disable grafts, but check replacements.
* guix/scripts/lint.scm (check-derivation): Pass #:graft? #f.  When
'package-replacement' exists, compute its derivation.
2016-03-03 09:46:17 +01:00
Lukas Gradl
e90819c40a gnu: Add procmail.
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
 * gnu-system.am (dist_patch_DATA): Add it.
 * gnu/packages/mail.scm (procmail): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-03-02 20:44:18 -05:00
Ludovic Courtès
94d609aba8 guix build: -S returns the replacement's source.
Reported by Mark H Weaver.

* guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are
true, use the source of P's replacement.
* tests/guix-build.sh: Add test.
2016-03-03 00:18:30 +01:00
Ludovic Courtès
49c4fd2aab hydra: Completely disable grafting.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Parameterize '%graft?'.
Build package replacements when they are available.
2016-03-03 00:18:30 +01:00
Ludovic Courtès
f8187bde7f hydra: Improve readability.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Use 'filter-map' instead
of directly 'fold-packages'.
2016-03-03 00:18:30 +01:00