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45357 commits

Author SHA1 Message Date
Ricardo Wurmus
a07ee2584a
gnu: r-massspecwavelet: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4fb52345b2
gnu: r-xcms: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
92f40538d3
gnu: r-wrench: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
25db5611e2
gnu: r-wiggleplotr: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1a2569e4cc
gnu: r-widgettools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
316bcd07a8
gnu: r-webbioc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
18b93e0350
gnu: r-zfpkm: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
c5a4c5a1ce
gnu: r-rbowtie2: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
82d87ce02a
gnu: r-progeny: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
97e317007c
gnu: r-biocfilecache: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
049de95de7
gnu: r-iclusterplus: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
02684becc9
gnu: r-rbowtie: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
2cebc5d135
gnu: r-sgseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
3dd2450e65
gnu: r-rhisat2: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a15e52ec78
gnu: r-quasr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
11db82b07c
gnu: r-rqc: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a9e5145c32
gnu: r-birewire: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
8d766270c4
gnu: r-birta: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
643aaf7eaf
gnu: r-ropls: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
700072565f
gnu: r-annotatr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4390788ea2
gnu: r-rsubread: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
482ba0b3ed
gnu: r-flowutils: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
51ffac455e
gnu: r-rcistarget: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
42b06298ef
gnu: r-cicero: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
33ce50e322
gnu: r-genie3: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
3672b74f6f
gnu: r-roc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
9eade2294e
gnu: r-watermelon: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
f5ef7dd6b7
gnu: r-gdsfmt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
8b941a50ef
gnu: r-bigmelon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
2223bbc726
gnu: r-seqbias: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
02c18abe62
gnu: r-reqon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
c0cba4b542
gnu: r-wavcluster: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
cb734c60dc
gnu: r-timeseriesexperiment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
053a2127bc
gnu: r-genomegraphs: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e13f977312
gnu: r-wavetiling: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e2f481dad0
gnu: r-variancepartition: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
0b0906c845
gnu: r-htqpcr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
989be6df99
gnu: r-unifiedwmwqpcr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
0726645eca
gnu: r-genefilter: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.68.0.
[propagated-inputs]: Remove r-s4vectors and add r-biocgenerics.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
867018e138
gnu: r-deseq2: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.26.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
ebc81e300c
gnu: r-dexseq: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.32.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
12c4555d44
gnu: r-annotationforge: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.28.0.
 2019-12-15 15:39:04 +01:00