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135976 commits

Author SHA1 Message Date
Ricardo Wurmus
a1cf3f862a
gnu: r-enhancedvolcano: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.22.0.

Change-Id: I9390eb439700daf7ab53d5883688a05757004c99
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
30be4dea15
gnu: r-edger: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.2.0.

Change-Id: Ide6a7aaf2a313923dd1e6ff9e768dfce03010c34
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
02f37641c7
gnu: r-edaseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.38.0.

Change-Id: I44c161680cf0d49d4b72b8ed4f40841a74cbf948
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
602331607d
gnu: r-dittoseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.16.0.

Change-Id: I9159c299fd82883a2d03e2fa17399c1d24cb7c62
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
64474d5d84
gnu: r-dirichletmultinomial: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.46.0.

Change-Id: I0ef2d8bbca26042d001babd7bd25120144bad7cc
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0e9bde0048
gnu: r-diffcyt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.24.0.

Change-Id: Ib7c5cf3735f78eb183ce4dc17307ad863d16c010
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
2d5d0ab72f
gnu: r-dexseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.50.0.

Change-Id: I5b695996799b23aeebf0545346264e3b02cf3ec5
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
4c5c6b070e
gnu: r-deseq2: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.44.0.

Change-Id: I7108fee1c2bf927a43d339ee5640d4a1bed6a2f4
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
b30d4d1cc8
gnu: r-complexheatmap: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.20.0.

Change-Id: I9b557819bac13ba00ee86dd43709c4e1b7517cde
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
1de2a99743
gnu: r-chipseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.54.0.

Change-Id: If80fc00811bd2707cbba97a64c2efe46848a8b60
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0298c87534
gnu: r-chipseeker: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.40.0.

Change-Id: I6eb05f4da33610aa1ecb90ea75470bda1c184f0a
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0b92bb1f1e
gnu: r-category: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.70.0.

Change-Id: Ia102f873af5883aeba3379366953cecdec2be342
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
e6032ad668
gnu: r-bsgenome: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.72.0.

Change-Id: Id0855145e079e607ab915ef9076c637059c81fd8
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
9a071ad941
gnu: r-biovizbase: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.52.0.

Change-Id: I71ac5375c00fadedc44c4f027b236648b3e2a4cd
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
472ed71761
gnu: r-biostrings: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.0.

Change-Id: I7ddcf26e34210dd6065fdd8c937e68f256fee43e
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
065b98f30d
gnu: r-biocparallel: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.38.0.

Change-Id: I943f443a0f6f3182c9f7fd11f57e1bfabb6c04df
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
cfddce9f42
gnu: r-biomart: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.0.
[propagated-inputs]: Remove r-httr and r-xml; add r-httr2.

Change-Id: I6460b29e2a4d92be9e4675ddf461f65f79585449
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
a1d32a9206
gnu: r-biobase: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.64.0.

Change-Id: I5330e457bbabd007683ed869b539bd38a407df30
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
5970c028f0
gnu: r-bamsignals: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.36.0.

Change-Id: I99174b5d88723a8e6606cf067353f2051bab39d1
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
9b11dc5b0b
gnu: r-aroma-light: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.34.0.

Change-Id: I88f47a7143e875b60fea818bdb4d7b037345d055
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
c2a3f81a63
gnu: r-annotationhub: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.12.0.
[propagated-inputs]: Remove r-interactivedisplaybase.

Change-Id: I849b7fcc5eea1cc48076b134fddda17bc8461973
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
5c889fbcfd
gnu: r-annotationforge: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.46.0.

Change-Id: Ieabb5d5d3f990d961014003d47eb5dd21656ebc2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
131109f910
gnu: r-annotationfilter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.28.0.

Change-Id: Ib4cad5054f1cf174ee2ecb589f8442e9dc86e5dc
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
d90bc96e17
gnu: r-annotationdbi: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.66.0.

Change-Id: Ia103d540fc7e872fd96bffa044076c969c072319
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
cb56dc94bc
gnu: r-annotate: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.82.0.

Change-Id: I9940d1837c62c2421513021fe12fb87e629ba0df
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
55dca2271e
gnu: r-affxparser: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.76.0.

Change-Id: I9c412f0ef4f29d50e07f32a6944f13ba470cc6c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
563de39417
gnu: r-affyio: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.74.0.

Change-Id: If694dbba3f447019bb822ba94ff73976b77864c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
2299ed5417
gnu: r-affycoretools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.76.0.

Change-Id: I486f8aca7a0d2a9640b3ae05ba50fdc6420fde24
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
b563dc47fd
gnu: r-affycontam: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.62.0.

Change-Id: Ia2688e906b16b11d96925beded22d47cbb3f67c0
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
fdd6664fb1
gnu: r-affycomp: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.80.0.

Change-Id: I544133d53f46e156cd0483c27a88c56f31be4af4
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
65e26fef18
gnu: r-affy: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.82.0.

Change-Id: Ie17dffe76198632a8e1ea6f7a0f1c9eb68049b98
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
0949c9f244
gnu: r-nebulosa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.14.0.

Change-Id: I9d86fabf46fe139c6e6f210f46dafd5132c5adad
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
c322655c7d
gnu: r-italics: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.64.0.

Change-Id: Ibed68d0d8209db3f5a76c507a58c76389d546af2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
a32bba3fb6
gnu: r-isoformswitchanalyzer: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.4.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I1e6f6767698f2f97cfc53637987a824a6d80609d
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
b4d31f1a10
gnu: r-iranges: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.38.0.

Change-Id: I9e1a24614dcfc179a5659b3bccdde26cb7b06dab
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
f4c03a251e
gnu: r-infercnv: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.20.0.
[inputs]: Remove python.

Change-Id: Ib8666fd27a504c824c747cc27960bde490459544
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
bec276a979
gnu: r-ideoviz: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.40.0.

Change-Id: I5b40d23a9955c9844eee99525977fdf72d7f31a8
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
d140d8a1c9
gnu: r-bluster: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.14.0.

Change-Id: I1648c28f20ff3649face1ac35ad76301591c5989
2024-05-08 12:53:21 +02:00
Ricardo Wurmus
6b72971be3
gnu: r-dyndoc: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.82.0.

Change-Id: Ib44ec47e918a680d271e8c8ea81db745f1f06325
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
657c030a57
gnu: r-dss: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-dss): Update to 2.52.0.

Change-Id: I8c0e6f9d232d74037efc76db8e11cc6ae1035d63
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
071eedcbc1
gnu: r-dropletutils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.24.0.

Change-Id: I95b2770d95b73ca6aee987b4dadaf9d125bf5ba8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
fa46220283
gnu: r-drimseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.32.0.

Change-Id: Iff51e039659421421e54bf47765fb6e0d5ae8508
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
a841f1f692
gnu: r-dmrcate: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.0.
[propagated-inputs]: Add r-annotationhub.

Change-Id: I1b91adbb7d766d3301d2cd03b933c57fe755dd8a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
7f4e7bff48
gnu: r-derfinderhelper: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.38.0.

Change-Id: Iefab596f9f9d795d0fbcb85c2e01cea0f0263877
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
d9002c14f9
gnu: r-derfinder: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.38.0.

Change-Id: I4f73fe46311540dd31e3eb9d58114a555cada8ce
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
4b2e1b69cd
gnu: r-densvis: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.14.0.

Change-Id: I7d8d13236a8e2a87dd6ab1cb6fac7277c615c170
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
5c93327cd9
gnu: r-delayedarray: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.0.

Change-Id: I2b823b0f6da15420f9f208932e2306cde7c6de0e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
fbfb298d0e
gnu: r-degreport: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.0.

Change-Id: I481637b9d661addbf2bc3ebaf1d396fc0087561e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
622dc493e7
gnu: r-deepsnv: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.50.0.

Change-Id: Idb65967f3c76960b1db761c662adda3c84586abd
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
8e5486f5bd
gnu: r-decoupler: Update to 2.9.7.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.9.7.
[propagated-inputs]: Add r-biocparallel and r-parallelly.

Change-Id: I8218c03aa7cfea84b9df58ff17500f9d3a6ecac5
2024-05-08 12:53:20 +02:00