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135976 commits

Author SHA1 Message Date
Ricardo Wurmus
12f94fb1ae
gnu: r-deconvr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.10.0.

Change-Id: Ia56bc18028860d0aaeb78d479d5b7b162b5908b6
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
ebb70fe9b6
gnu: r-decontam: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.24.0.

Change-Id: Ia740e8953bd970ba9454944da2459a8d39c990bf
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
f1dbdc8522
gnu: r-deconrnaseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.46.0.

Change-Id: I637bcbd43e55d0125a2273e2431b9effebb4d409
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
aec3a47c8c
gnu: r-decomptumor2sig: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.20.0.

Change-Id: I4f7cd015a500b904d725a9098907253b81e7d57c
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
40e85015aa
gnu: r-decipher: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 3.0.0.
[propagated-inputs]: Remove r-rsqlite.

Change-Id: I8fd3b7c179b7d4e06ad1e7f592add40b77061eee
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
199305df78
gnu: r-dearseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.16.0.

Change-Id: I34f7edb001fb1f63e67b5e2c8378f746aa8b7ad8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
94b4335bd5
gnu: r-damefinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.16.0.

Change-Id: I934f27e813e05d5cfef32eb0bec0bd784a200c5a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
091e0144a2
gnu: r-dama: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.76.0.

Change-Id: Ia2f960bffb184165a8aecfdb6673c03f4f10fc57
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
ba9b588001
gnu: r-cummerbund: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.46.0.

Change-Id: Ia93d7cb81143bfd418d943717ee1cd5e748a0902
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
6134ddd012
gnu: r-coverageview: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.42.0.

Change-Id: I357e71ea80487c2ea7d6c0b8444684567c901af1
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
5c83d7b88c
gnu: r-coregx: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.8.0.

Change-Id: I1d33a891228edf133d8cb0948bb605df2c9c5765
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
cf92a83ec2
gnu: r-cellid: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.12.0.

Change-Id: I620fe4d005eb28786f3d6b50b3459953f23e8184
2024-05-08 12:53:20 +02:00
Ricardo Wurmus
807f16e459
gnu: r-cardelino: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.6.0.

Change-Id: I2b3b37fb959546ae218f03cd727a32a1808a224b
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
5ae5bc6a87
gnu: r-breakpointr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.22.0.

Change-Id: If1c9422eb8780bbeafb5054c5b0533411f40590d
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
94cb2cee11
gnu: r-biocgenerics: Update to 0.50.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.50.0.

Change-Id: I2b44832f6cde8d943db8307050efa6b68bb814b4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
eaeab2d12d
gnu: r-biocversion: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.19.1.

Change-Id: Ia707fe47c7749cc63fa057dddcc0d49f7443c2a1
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
06f7d75e10
gnu: r-barcodetrackr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.12.0.

Change-Id: Ia20e92c383c7a89e1d6accba98cf879cd57de25a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
89c8795fb8
gnu: r-banocc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.28.0.

Change-Id: I90a50fc574f2c064375acad39315b167c5cb3586
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
47ab649ecd
gnu: r-bandits: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.20.0.

Change-Id: Icaa2655549d255e2894ed15977f0e5f0c9041fc4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
3f1b37c851
gnu: r-bambu: Update to 3.6.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.6.0.

Change-Id: I206c2867ba40bba100bd23c7d861bc3be778e09f
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
23d6984ba1
gnu: r-badregionfinder: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.32.0.

Change-Id: I396ff2488562d13c93280082e93e5de3821c93da
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
ef47716688
gnu: r-bader: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.42.0.

Change-Id: I6fa42bf109b5e5bfad1eb4f032e453475af42c2e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
2f1fe68bee
gnu: r-basespacer: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.48.0.

Change-Id: I9e2b2cb3a9497453e2653cdbe0288987ea187f0a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
48c7540a27
gnu: r-bags: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-bags): Update to 2.44.0.

Change-Id: I4d7438dca325f8814d7c3bc644aa79c2ebab9d22
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
204c59d2fd
gnu: r-baalchip: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.30.0.
[inputs]: Remove perl.

Change-Id: I42125e71f8985a4b9d9e797b1178386d2f9d6451
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
e1c3e7b8d0
gnu: r-awst: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.12.0.

Change-Id: I1d9bdf4378b978bf9a3ee6e996c78eb25c2e10ad
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
6622a40596
gnu: r-awfisher: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.18.0.

Change-Id: I0f28eefaa791426014d2ed3268aa6a8cff6ac6ef
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
030591f684
gnu: r-attract: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.56.0.

Change-Id: Ic9657b83e27fd228ef454b4f455fbb79002f056e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
00c6334309
gnu: r-atsnp: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.20.0.

Change-Id: I36f9baa45b2483bcbb0c9a25c5b938c4a0df16fa
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
cd616ff646
gnu: r-atena: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.10.0.
[propagated-inputs]: Add r-cli, r-genomicfeatures, and r-matrixgenerics.

Change-Id: I2aef381c001638e111125cd60b07b5fc7b9e01a9
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
499ca07277
gnu: r-asset: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.22.0.

Change-Id: Ie3984d92c32734b258f4106d9bef01bef060e089
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
537c1879a8
gnu: r-assessorf: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.22.0.

Change-Id: Ic2f5c1a2e5443e69574e30abe86ae3a19c2156ea
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
2fc6d3bf31
gnu: r-aspli: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.14.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: Ib60f87bf6166c68c6baded4e8555bafcf9573100
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
e9d16dec70
gnu: r-asics: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.0.

Change-Id: I6a778323b57e99a8bc8c1a2e2227079d9bdaff1c
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
ddddc13f93
gnu: r-asgsca: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.38.0.

Change-Id: I3f22548eae87db3eeb6691b45c30ab2edd452aac
2024-05-08 12:53:19 +02:00
Ricardo Wurmus
dffc5cf95c
gnu: r-aseb: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.48.0.

Change-Id: Ifb4450374fa2831bab9e360de6ec12f7c22f47d9
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
f4c71864d5
gnu: r-asafe: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.30.0.

Change-Id: Id54647b1dadf071ea51c180ca50e5386a6078188
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
3f31823f41
gnu: r-arrayquality: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.82.0.

Change-Id: I94b389cd121cb3748ad7a938c37b0c5152820ba3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
a0cef9b470
gnu: r-arraymvout: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.62.0.

Change-Id: Ic8cc9efc851af7471125e2ff2084d685c099d32b
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
db7d9feb79
gnu: r-arrayqualitymetrics: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.60.0.

Change-Id: Ia67c533b2b5c227a8cd2acaac8ab717517cd5d05
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
e17b3add0d
gnu: r-arrayexpress: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.64.0.

Change-Id: I01be57f62c13271442c4fb174ad923e29f8f63e8
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
98eebefbf8
gnu: r-antiprofiles: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.44.0.

Change-Id: Iac22dec83898624e88ad67983d4809729d6e2d09
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
98890f8da7
gnu: r-annmap: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.46.0.

Change-Id: I2f693693c75b2729aa81c593c0ff3c07cc4f486f
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
22784fbacf
gnu: r-anf: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anf): Update to 1.26.0.

Change-Id: I0027bfaa713cf5b75c9ec52d72715c1d56955b92
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
28cbac7461
gnu: r-aneufinder: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.32.0.

Change-Id: I1e3061cf514b735c84abc8b4e850236f493dd75d
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
416fb74e92
gnu: r-altcdfenvs: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.66.0.

Change-Id: I4d6881076a68394206501f254045ff59a2b4bcec
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
d237852199
gnu: r-alpsnmr: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.6.0.

Change-Id: Ia35eda0125de276989767b8d663a128f3014582a
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
b6f742d0f6
gnu: r-alphabeta: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.18.0.

Change-Id: I9970a01aec806faad204033d9ece392becfaca99
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
70ac81d484
gnu: r-alevinqc: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.20.0.

Change-Id: Ib24ff6f3db37bf5d746c745999b768e1ec89dca3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus
af81afffd5
gnu: r-aldex2: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.36.0.

Change-Id: Iab362c11ad5960901eaefa016cda09cf65d23355
2024-05-08 12:53:18 +02:00