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Author SHA1 Message Date
Cyril Roelandt
d889e6c4d9 gnu: Add python-pep8. 
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
 2015-06-30 00:07:55 +02:00
Ricardo Wurmus
2573410865 gnu: withershins: Use new "libiberty" package. 
* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
   [arguments]: Simplify "find-libiberty" phase.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus
2b6b6d13e7 gnu: Add libiberty. 
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus
74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus
82c370dea1 gnu: Add Blast+. 
* gnu/packages/bioinformatics.scm (blast+): New variable.
 2015-06-29 16:13:28 +02:00
Ludovic Courtès
11906b2c38 gnu: global: Update to 6.5. 
* gnu/packages/code.scm (global): Update to 6.5.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès
622a616e33 gnu: help2man: Update to 1.47.1. 
* gnu/packages/man.scm (help2man): Update to 1.47.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès
b1f5fe0eb7 gnu: parallel: Update to 20150622. 
* gnu/packages/parallel.scm (parallel): Update to 20150622.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès
dd138fc856 gnu: screen: Update to 4.3.1. 
* gnu/packages/screen.scm (screen): Update to 4.3.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès
ce1e4bd58d gnu: texinfo: Add version 6.0. 
* gnu/packages/texinfo.scm (texinfo-6): New variable.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès
ab5f49cf6a gnu: gcc-4.8: Update to 4.8.5. 
* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
 2015-06-29 14:42:10 +02:00
Ricardo Wurmus
cc6ed47737 gnu: Add plink. 
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
 2015-06-29 12:54:48 +02:00
Eric Bavier
5c852e085d gnu: synergy: Upgrade to 1.7.3. 
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
  [source]: Use github for source download.  Add snippet to remove
  bundled source and binaries.
  [inputs]: Add openssl.
  [arguments]: Copy example configuration files to out during 'install
  phase.
 2015-06-28 12:03:30 -05:00
Ricardo Wurmus
b5ad1659ba gnu: Add sfarkxtc. 
* gnu/packages/compression.scm (sfarkxtc): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus
646898b358 gnu: Add sfarklib. 
* gnu/packages/compression.scm (sfarklib): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus
fcbeb00b70 gnu: Add Guitarix. 
* gnu/packages/audio.scm (guitarix): New variable.
 2015-06-28 18:59:57 +02:00
Ricardo Wurmus
fb029d463d gnu: ardour: Update to 4.1. 
* gnu/packages/audio.scm (ardour): Update to 4.1.
 2015-06-28 14:34:08 +02:00
Ricardo Wurmus
58593975b0 gnu: Add libtar. 
* gnu/packages/compression.scm (libtar): New variable.
 2015-06-28 12:38:46 +02:00
Claes Wallin
60def646bb gnu: Add pv. 
* gnu/package/pv.scm (pv): New file.
 * gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-06-27 17:27:49 +03:00
Ludovic Courtès
c92f1c0a33 gnu: Refer to 'gcc' instead of 'gcc-4.9'. 
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
  libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
  (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
  %gcc-static, %gcc-stripped): Likewise.
 2015-06-26 17:06:30 +02:00
Ludovic Courtès
744985761a gnu: youtube-dl: Update to 2015.06.25. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
 2015-06-26 16:56:43 +02:00
Ricardo Wurmus
3a1bfe186d gnu: Add python2-fastlmm. 
* gnu/packages/python.scm (python2-fastlmm): New variable.
 2015-06-26 15:29:01 +02:00
Ricardo Wurmus
0dde623211 gnu: Add python2-pysnptools. 
* gnu/packages/python.scm (python2-pysnptools): New variable.
 2015-06-26 15:29:01 +02:00
Mark H Weaver
1c080cb68a gnu: nettle: Disable ifunc method of library initialization. 
* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
  phase.
 2015-06-25 16:47:59 -04:00
Ricardo Wurmus
19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus
eed67cbb8f gnu: Add default GCC and default gfortran. 
* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
 2015-06-25 18:28:54 +02:00
宋文武
96693d1d92 gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'. 
This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base.

* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
  (gst-plugins-base)[native-search-paths]: Remove.
 2015-06-25 10:09:08 +08:00
Ludovic Courtès
31fbf4b637 gnu: pius: Depend on GnuPG 2.0 rather than 2.1. 
* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.
 2015-06-24 18:05:03 +02:00
Ricardo Wurmus
6d149ec349 gnu: julia: Use modify-phases syntax and add return values. 
* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
  build phases and add missing return values.
 2015-06-24 15:34:55 +02:00
Ricardo Wurmus
83a0db178f gnu: r: Use gfortran-4.9. 
* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
  gfortran-4.9.
 2015-06-24 12:03:00 +02:00
Ricardo Wurmus
c69a8b7b1b gnu: Add gfortran 4.9. 
* gnu/packages/gcc.scm (gfortran-4.9): New variable.
 2015-06-24 12:03:00 +02:00
Ben Woodcroft
c684629f7c gnu: Add hmmer. 
* gnu/packages/bioinformatics.scm (hmmer): New variable.
 2015-06-24 00:39:22 -04:00
宋文武
5a72e4665a gnu: screen: Install the Info manual. 
* gnu/packages/screen.scm (screen)[native-inputs]: New field.
 2015-06-24 09:20:27 +08:00
Ricardo Wurmus
ec8da0e25d gnu: Add setBfree. 
* gnu/packages/audio.scm (setbfree): New variable.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus
9e8505343e gnu: ftgl: Propagate "freetype". 
* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from
  "inputs" to "propagated-inputs".
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus
0543c32659 gnu: faust: Remove prebuilt library in snippet. 
* gnu/packages/audio.scm (faust)[arguments]: Remove the phase
  'remove-prebuilt-library...
* gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus
4758eaaa2d gnu: star: Update to 2.4.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.
 2015-06-23 18:37:16 +02:00
Ricardo Wurmus
0ec8b206d4 gnu: miso: Install executables. 
* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
  "setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
  and "python2-pytz".
 2015-06-23 13:13:03 +02:00
Ricardo Wurmus
c4325f6269 gnu: Add idr. 
* gnu/packages/bioinformatics.scm (idr): New variable.
 2015-06-23 10:55:52 +02:00
Mark H Weaver
f3457e7001 gnu: linux-libre: Update to 4.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.
  [inputs]: Remove gcc-4.9, since it is now the default compiler.
* gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf:
  Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>.
 2015-06-23 02:53:00 -04:00
宋文武
b7a3cf11a8 gnu: Add gnome-klotski. 
* gnu/packages/gnome.scm (gnome-klotski): New variable.
 2015-06-23 14:16:42 +08:00
Mark H Weaver
607a04ae80 gnu: Add gom. 
* gnu/packages/gnome.scm (gom): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
86d6a893b3 gnu: Add clutter-gst. 
* gnu/packages/gnome.scm (clutter-gst): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
bf7f17bad8 gnu: Add clutter-gtk. 
* gnu/packages/gnome.scm (clutter-gtk): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
fb182b8a44 gnu: Add clutter. 
* gnu/packages/gnome.scm (clutter): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
ba421ab734 gnu: Add cogl. 
* gnu/packages/gnome.scm (cogl): New variable.
 2015-06-23 01:04:53 -04:00
Andreas Enge
22ad39187c gnu: sipwitch: Update to 1.9.8. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.8.
 2015-06-23 00:19:25 +02:00
Ludovic Courtès
89223417fd gnu: commencement: Make a few variables private. 
This removes ambiguity warnings when installing these packages.

* gnu/packages/commencement.scm (glibc-final, gcc-final,
  glibc-utf8-locales-final): Make private.
 2015-06-22 23:17:16 +02:00
Ludovic Courtès
790c3717d2 gnu: imagemagick: Do not retain reference to "doc" output. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Use 'modify-phases'.
  Add 'strip-configure-xml' phase.
 2015-06-22 23:17:16 +02:00
Andreas Enge
8c2dbe3f9d gnu: ucommon: Update to 6.3.4. 
* gnu/packages/telephony.scm (ucommon): Update to 6.3.4.
 2015-06-22 12:40:53 +02:00
Mark H Weaver
bf76d98789 Merge branch 'master' into core-updates 2015-06-21 14:30:22 -04:00
Mark H Weaver
fc9ff915b3 gnu: jemalloc: Build with gcc-4.8 on i686. 
* gnu/packages/jemalloc.scm (jemalloc)[native-inputs]: When compiling natively
  on i686, add gcc-4.8.
 2015-06-21 14:14:04 -04:00
Mark H Weaver
194782a881 gnu: lame: Build with gcc-4.8 on i686. 
* gnu/packages/mp3.scm (lame)[native-inputs]: When compiling natively on i686,
  add gcc-4.8.
 2015-06-21 14:08:39 -04:00
Ben Woodcroft
12b04cbee6 gnu: Add fasttree. 
* gnu/packages/bioinformatics.scm (fasttree): New variable.
 2015-06-21 03:30:40 -04:00
Mark H Weaver
407838510d gnu: ffmpeg: Update to 2.7.1. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.1.
 2015-06-21 01:18:03 -04:00
Mark H Weaver
4d6d82818a gnu: totem-pl-parser: Add gobject-introspection support. 
* gnu/packages/gnome.scm (totem-pl-parser)[native-inputs]: Add
  gobject-introspection.
 2015-06-20 23:51:41 -04:00
Mark H Weaver
22a6ad6a81 gnu: totem-pl-parser: Move glib, gmime, and libxml2 to propagated-inputs. 
* gnu/packages/gnome.scm (totem-pl-parser)[inputs]: Move glib, gmime, and
  libxml2 to ...
  [propagated-inputs]: ... here.
 2015-06-20 23:51:41 -04:00
Mark H Weaver
180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Mark H Weaver
d80b0d4af5 gnu: gnome-doc-utils: Add python2-libxml2 to native-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/gnome.scm (gnome-doc-utils)[native-inputs]: Add
  python2-libxml2.
 2015-06-19 23:03:04 -04:00
Mark H Weaver
264d57b68a gnu: itstool: Add python2-libxml2 to propagated-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/glib.scm (itstool)[propagated-inputs]: Add python2-libxml2.
 2015-06-19 23:02:36 -04:00
Mark H Weaver
9a6953d28a gnu: mdadm: Add compilation fix for gcc-4.9. 
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (mdadm): Add patch.
 2015-06-19 22:42:12 -04:00
Ludovic Courtès
94585e881f gnu: clang: Build without debugging symbols. 
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Add #:build-type.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès
fd6ae1b983 gnu: clang: Allow 'clang' to link executables. 
* gnu/packages/patches/clang-libc-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/llvm.scm (clang-from-llvm)[source]: Use it.
  [inputs]: Add "gcc-lib".
  [arguments]. Add -DGCC_INSTALL_PREFIX and -DC_INCLUDE_DIRS to
  #:configure-flags.  Add #:phases argument.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès
ef11ac8701 gnu: clang: Add search path specifications. 
* gnu/packages/llvm.scm (clang-from-llvm)[native-search-paths]: New field.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès
d0abf829a9 gnu: Add libstdc++ as a standalone package. 
* gnu/packages/gcc.scm (make-libstdc++): New procedure.
  (libstdc++-4.9): New variable.
* gnu/packages/commencement.scm (libstdc++): Add TODO comment.
 2015-06-19 17:23:47 +02:00
pjotrp
9942e8030d gnu: Add ruby 2.1.6 
* gnu/packages/ruby.scm (ruby-2.1): New variable.
 2015-06-19 08:27:27 -04:00
David Thompson
5fd77f3f43 gnu: Make 'mount' interface in static Guile consistent with Guix API. 
Rather than expecting a pointer, the version of 'mount' in
guile-static-stripped now takes a string for the 'options' argument, just like
the 'mount' procedure in (guix build syscalls).

* gnu/packages/patches/guile-linux-syscalls.patch (mount): Expect a string or
  #f for 'options' argument.
* gnu/build/file-systems.scm (mount-file-system): Use new 'mount' interface.
 2015-06-19 07:49:18 -04:00
Ludovic Courtès
cbfb893493 gnu: unrtf: Update to 0.21.9. 
* gnu/packages/unrtf.scm (unrtf): Update to 0.21.9.
  [source]: Add 'modules' and 'snippet' fields.
  [arguments]: Remove.
 2015-06-19 11:08:20 +02:00
Ricardo Wurmus
b22755be95 gnu: Add Raul. 
* gnu/packages/audio.scm (raul): New variable.
 2015-06-19 09:39:13 +02:00
Mark H Weaver
15b4ffa6f2 Merge branch 'master' into core-updates 2015-06-18 14:09:19 -04:00
Ricardo Wurmus
b1fb59d3ef gnu: vamp: Update to 2.6. 
* gnu/packages/audio.scm (vamp): Update to 2.6.
 2015-06-18 16:29:19 +02:00
Ricardo Wurmus
b7ed678494 gnu: Add zita-resampler. 
* gnu/packages/audio.scm (zita-resampler): New variable.
 2015-06-18 16:27:32 +02:00
Ricardo Wurmus
777291f007 gnu: Add Faust. 
* gnu/packages/audio.scm (faust): New variable.
 2015-06-18 16:27:32 +02:00
Ricardo Wurmus
fe73aef43e gnu: Add Qsynth. 
* gnu/packages/audio.scm (qsynth): New variable.
 2015-06-18 16:27:32 +02:00
Mark H Weaver
8cbb562020 gnu: swig: Update to 3.0.5. 
* gnu/packages/swig.scm (swig): Update to 3.0.5.
 2015-06-18 09:46:55 -04:00
Mark H Weaver
379d41422c gnu: ocaml: Update gcc:lib input to gcc-4.9. 
* gnu/packages/ocaml.scm (ocaml)[inputs]: Use gcc:lib from gcc-4.9.
 2015-06-18 01:33:57 -04:00
Mark H Weaver
2abf678682 Merge branch 'master' into core-updates 2015-06-18 01:32:37 -04:00
Mark H Weaver
040ca34f7e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 684bf7c.
 2015-06-18 00:10:02 -04:00
Mark H Weaver
9ae1e92071 gnu: cpio: Fix symlink-bad-length test. 
* gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio): Add patch.
 2015-06-17 23:19:02 -04:00
Ben Woodcroft
684bf7c7f1 gnu: Add diamond. 
* gnu/packages/bioinformatics.scm (diamond): New variable.
 2015-06-17 19:43:54 -04:00
Ludovic Courtès
2f6d3e417f gnu: ocaml: Don't rely on (gnu packages commencement). 
* gnu/packages/ocaml.scm (ocaml)[inputs]: Use (canonical-package gcc-4.8)
  instead of GCC-FINAL.
 2015-06-18 00:25:48 +02:00
Mark H Weaver
ba981db293 gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 2c04921.
 2015-06-17 16:27:06 -04:00
Ricardo Wurmus
86517de69c gnu: miso: Use HTTPS URL. 
* gnu/packages/bioinformatics.scm (miso)[source]: Use "https" protocol for
  downloading the source tarball.
 2015-06-17 15:28:43 +02:00
Ricardo Wurmus
1bbc3b1d2c gnu: bedops: Update to 2.4.14. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.14.
 2015-06-17 14:37:29 +02:00
宋文武
6178d94706 gnu: Add wayland. 
* gnu/packages/freedesktop.scm (wayland): New variable.
 2015-06-17 18:29:15 +08:00
Mark H Weaver
01e64ef504 gnu: talloc: Change source URI to use https. 
* gnu/packages/samba.scm (talloc)[source]: Change URI to use https.
 2015-06-16 14:20:56 -04:00
宋文武
2cba3d6f9e gnu: qt: Add more inputs. 
* gnu/packages/qt.scm (qt)[inputs]: Add cups, libmng, postgresql and unixodbc.
 2015-06-16 23:30:06 +08:00
宋文武
b9ecd5ae24 gnu: Add libmng. 
* gnu/packages/image.scm (libmng): New variable.
 2015-06-16 23:30:06 +08:00
宋文武
a33b8449a0 gnu: qt: Update to 5.4.2. 
* gnu/packages/qt.scm (qt): Update to 5.4.2.
 2015-06-16 23:30:06 +08:00
宋文武
d22b9397e1 gnu: qt-4: Update to 4.8.7. 
* gnu/packages/qt.scm (qt-4): Update to 4.8.7.
 2015-06-16 23:30:06 +08:00
宋文武
9e4552aac2 gnu: talloc: Update to 2.1.2. 
* gnu/packages/samba.scm (talloc): Update to 2.1.2.
 2015-06-16 23:30:05 +08:00
Andreas Enge
d571101770 gnu: calibre: Update to 2.30.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.30.0.
 2015-06-16 12:33:08 +02:00
Mark H Weaver
8e28d22c91 gnu: libtiff: Add fixes for several CVEs. 
* gnu/packages/patches/libtiff-CVE-2012-4564.patch,
  gnu/packages/patches/libtiff-CVE-2013-1960.patch,
  gnu/packages/patches/libtiff-CVE-2013-1961.patch,
  gnu/packages/patches/libtiff-CVE-2013-4231.patch,
  gnu/packages/patches/libtiff-CVE-2013-4232.patch,
  gnu/packages/patches/libtiff-CVE-2013-4243.patch,
  gnu/packages/patches/libtiff-CVE-2013-4244.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch,
  gnu/packages/patches/libtiff-CVE-2014-8129.patch,
  gnu/packages/patches/libtiff-CVE-2014-9330.patch,
  gnu/packages/patches/libtiff-CVE-2014-9655.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[source]: Add patches.
 2015-06-16 01:02:01 -04:00
Mark H Weaver
7d02724b7b Merge branch 'master' into core-updates 2015-06-16 01:01:54 -04:00
Mark H Weaver
fef3cfaaab gnu: qemu: Add fixes for CVE-2015-{4037,4103,4104,4105,4106}. 
* gnu/packages/patches/qemu-CVE-2015-4037.patch,
  gnu/packages/patches/qemu-CVE-2015-4103.patch,
  gnu/packages/patches/qemu-CVE-2015-4104.patch,
  gnu/packages/patches/qemu-CVE-2015-4105.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
 2015-06-16 00:29:28 -04:00
Mark H Weaver
77ff9e9a99 gnu: git: Update to 2.4.3. 
* gnu/packages/version-control.scm (git, git-manpages): Update to 2.4.3.
 2015-06-16 00:21:48 -04:00
Mark H Weaver
824d9dc301 gnu: ffmpeg: Update to 2.7. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.
  [native-inputs]: Add texinfo.
 2015-06-15 21:53:04 -04:00
Mark H Weaver
4c10c6cbc6 gnu: sqlite: Update to 3.8.10.2. 
* gnu/packages/databases.scm (sqlite): Update to 3.8.10.2.
 2015-06-15 20:37:46 -04:00
David Thompson
e778a54950 gnu: Add ruby-multipart-post. 
* gnu/packages/ruby.scm (ruby-multipart-post): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
71d3e2c28d gnu: Add ruby-slop. 
* gnu/packages/ruby.scm (ruby-slop): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
66e2086364 gnu: Add ruby-git. 
* gnu/packages/ruby.scm (ruby-git): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
0808e361b0 gnu: Add ruby-minitest-bacon. 
* gnu/packages/ruby.scm (ruby-minitest-bacon): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
351308356c gnu: Add ruby-minitest-sprint. 
* gnu/packages/ruby.scm (ruby-minitest-sprint): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
2206e94892 gnu: Add ruby-minitest. 
* gnu/packages/ruby.scm (ruby-minitest): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
afbbdf7752 gnu: Add ruby-daemons. 
* gnu/packages/ruby.scm (ruby-daemons): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
4c0aeb44d6 gnu: Add ruby-net-http-persistent. 
* gnu/packages/ruby.scm (ruby-net-http-persistent): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
e259bdf008 gnu: Add ruby-connection-pool. 
* gnu/packages/ruby.scm (ruby-connection-pool): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
de59d31607 gnu: Add ruby-arel. 
* gnu/packages/ruby.scm (ruby-arel): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson
96086cc540 gnu: Add ruby-bacon. 
* gnu/packages/ruby.scm (ruby-bacon): New variable.
 2015-06-15 20:27:38 -04:00
Ludovic Courtès
d3b4c1358c gnu: tar: Skip tests that rely on undefined unlinkat(2) behavior. 
Fixes <http://bugs.gnu.org/20597>.
Reported by Andrew Patterson <ajpatter@uwaterloo.ca>.

* gnu/packages/patches/tar-skip-unreliable-tests.patch: New file.
* gnu/packages/base.scm (tar)[source](patches): Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-16 00:27:27 +02:00
Ludovic Courtès
25cc3fe703 gnu: gettext: Fix non-deterministic msgunfmt behavior. 
Suggested by Alírio Eyng <alirioeyng@gmail.com>.

* gnu/packages/patches/gettext-msgunfmt.patch: New file.
* gnu/packages/gettext.scm (gnu-gettext)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-15 23:34:01 +02:00
amz3
975b8942a6 gnu: Rename (gnu packages dwm) to (gnu packages suckless). 
* gnu/packages/dwm.scm: Rename this ...
* gnu/packages/suckless.scm: ... to this.
* gnu-system.am (GNU_SYSTEM_MODULES): Change dwm.scm to suckless.scm.
 2015-06-15 17:25:41 -04:00
amz3
3a7334209e gnu: Add st. 
* gnu/packages/dwm.scm (st): New variable.
 2015-06-15 17:25:37 -04:00
Federico Beffa
00f4bd509f gnu: Add haskell-mode. 
* gnu/packages/emacs.scm (haskell-mode): New variable.
 2015-06-15 15:18:11 +02:00
Ludovic Courtès
1f175851e6 gnu: make-bootstrap: Build libbacktrace, required by cc1. 
Fixes <http://hydra.gnu.org/build/506982/nixlog/1/tail-reload>.

* gnu/packages/make-bootstrap.scm (%gcc-static): Remove
  --disable-libbacktrace.  It is needed by cc1-checksum.
 2015-06-15 15:01:55 +02:00
Ricardo Wurmus
be0a4c261e gnu: python-scikit-learn: Update to 0.16.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
a98c6eccf8 gnu: orfm: Update to 0.4.1. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.4.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
2f6b3d2e7e gnu: python-scikit-learn: Use OpenBLAS instead of ATLAS. 
* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
  "openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
  'set-environment-variables, which is only needed when ATLAS is used.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
719b01c157 gnu: python-scipy: Build with OpenBLAS and lapack. 
* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
  and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
  "set-environment-variables" with "configure-openblas".
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
cba256f8fa gnu: python-numpy-bootstrap: Add lapack to inputs. 
* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
  inputs, because OpenBLAS does not include lapack functions.
 2015-06-15 10:36:41 +02:00
Ricardo Wurmus
2e189eb89f gnu: lv2: Update to 1.12.0. 
* gnu/packages/audio.scm (lv2): Update to 1.12.0.
 2015-06-15 08:07:37 +02:00
Ludovic Courtès
86d7043cad gnu: make-bootstrap: Update patching of gawk's configure. 
* gnu/packages/make-bootstrap.scm (%static-inputs)[gawk]: Change
  "-export-dynamic" to "-Wl,-export-dynamic" to account for current
  'configure' file.
 2015-06-15 00:09:25 +02:00
Ludovic Courtès
8dca238b15 gnu: make-bootstrap: Switch to GCC 4.9. 
* gnu/packages/make-bootstrap.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (%gcc-static): Add --disable-libcilkrts, --disable-libvtv,
  --disable-libbacktrace.
 2015-06-15 00:09:24 +02:00
Mark H Weaver
a0d385b052 gnu: screen: Update to 4.3.0. 
* gnu/packages/screen.scm (screen): Update to 4.3.0.
 2015-06-14 12:19:32 -04:00
Mark H Weaver
1a802c7ec2 gnu: openssl: Update to 1.0.2c. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2c.
 2015-06-14 08:49:50 -04:00
Mark H Weaver
bcf2971f6e Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/commencement.scm
	gnu/packages/xml.scm
 2015-06-14 08:49:42 -04:00
Ludovic Courtès
ec29907160 gnu: gcc: Build libsanitizer's bundled libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Also patch
  libsanitizer/libbacktrace/Makefile.in.
 2015-06-14 14:41:01 +02:00
Mark H Weaver
7871724df7 gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-13 23:01:07 -04:00
Mark H Weaver
0ad8f76f7f gnu: perl-net-ssleay: Disable test that fails with openssl-1.0.2b. 
* gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
 2015-06-13 23:01:07 -04:00
Mark H Weaver
4c50e5ab3a gnu: python: Disable ssl test that fails with openssl-1.0.2b. 
* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
 2015-06-13 23:01:07 -04:00
Ludovic Courtès
b5616bc33d ld-wrapper: Ignore .so files specified after "-plugin" for RUNPATH purposes. 
Reported by Mark H Weaver
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20102#58>.

* gnu/packages/ld-wrapper.in (library-files-linked): Handle "-plugin"
  similarly to "-dynamic-linker".
 2015-06-14 01:00:27 +02:00
Ludovic Courtès
932e7204af gnu: guix: Wrap 'guix' so GUILE_LOAD_PATH includes the dependencies. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Add
  'wrap-program' phase.
 2015-06-13 22:33:37 +02:00
Ludovic Courtès
02c2cf43ce gnu: guix: Use 'modify-phases'. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Use
  'modify-phases' instead of 'alist-cons-before'.
 2015-06-13 22:33:37 +02:00
Eric Bavier
0061079a19 gnu: Add hydra. 
* gnu/packages/ci.scm: New file.
* gnu/packages/patches/hydra-automake-1.15.patch,
  gnu/packages/patches/hydra-disable-darcs-test.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add file.
  (dist_patch_DATA): Add patches.
 2015-06-13 08:05:01 -05:00
Eric Bavier
6e545bbf55 gnu: Add Catalyst-Authentication-Store-DBIx-Class. 
* gnu/packages/web.scm (perl-catalyst-authentication-store-dbix-class):
  New variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier
514214cbe5 gnu: Add Catalyst-Plugin-Authorization-Roles. 
* gnu/packages/web.scm (perl-catalyst-plugin-authorization-roles): New
  variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier
1937e38d06 gnu: Add Set-Object. 
* gnu/packages/perl.scm (perl-set-object): New variable.
 2015-06-13 08:05:00 -05:00
Ricardo Wurmus
8b9ec354ed gnu: Add powertabeditor. 
* gnu/packages/music.scm (powertabeditor): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
14a17ef6f4 gnu: catch-framework: Update to 1.1.3. 
* gnu/packages/check.scm (catch-framework): Update to 1.1.3.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
cc45cff83a gnu: Add rtmidi. 
* gnu/packages/audio.scm (rtmidi): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
6ce212b868 gnu: Add pugixml. 
* gnu/packages/xml.scm (pugixml): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
ccb8da2654 gnu: Add RapidJSON. 
* gnu/packages/web.scm (rapidjson): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
76e146384c gnu: Add withershins. 
* gnu/packages/code.scm (withershins): New variable.
 2015-06-12 23:01:33 +02:00
Manolis Ragkousis
16cae799db gnu: patch: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/patch-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-12 15:46:25 +03:00
Ben Woodcroft
1e44cf8b0f gnu: Add OrfM. 
* gnu/packages/bioinformatics.scm (orfm): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
47da6268c4 gnu: icedtea7: Bootstrap with GCJ. 
* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
  with IcedTea6.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
36742f4389 gnu: Add Couger. 
* gnu/packages/bioinformatics.scm (couger): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
0931c6091c gnu: Add randomjungle. 
* gnu/packages/machine-learning.scm (randomjungle): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
71f80f5487 gnu: Add python-libsvm. 
* gnu/packages/machine-learning.scm (python-libsvm): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
741115b649 gnu: Add libsvm. 
* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-06-12 12:57:30 +02:00