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Author SHA1 Message Date
Ricardo Wurmus
8e15f86139
gnu: Add r-a4reporting. 
* gnu/packages/bioconductor.scm (r-a4reporting): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
b8d13e2c0e
gnu: Add r-a4preproc. 
* gnu/packages/bioconductor.scm (r-a4preproc): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
9ae37581e0
gnu: Add r-a4classif. 
* gnu/packages/bioconductor.scm (r-a4classif): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
0ec0a5ecc9
gnu: Add r-a4core. 
* gnu/packages/bioconductor.scm (r-a4core): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
a793e88c5e
gnu: Add r-annaffy. 
* gnu/packages/bioconductor.scm (r-annaffy): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
ce77562a9e
gnu: Add r-mlinterfaces. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
409a13fe76
gnu: Add r-mpm. 
* gnu/packages/cran.scm (r-mpm): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
74cada8ef1
gnu: Add r-mlbench. 
* gnu/packages/cran.scm (r-mlbench): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
efba56139a
gnu: Add r-threejs. 
* gnu/packages/cran.scm (r-threejs): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
d59df3340b
gnu: Add r-gbm. 
* gnu/packages/cran.scm (r-gbm): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
8473597f80
gnu: Add r-ggvis. 
* gnu/packages/cran.scm (r-ggvis): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
fe3fb4e7ef
gnu: Add r-rda. 
* gnu/packages/cran.scm (r-rda): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
aae0b86d35
gnu: Add r-pamr. 
* gnu/packages/cran.scm (r-pamr): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
1c0c4b544d
gnu: Add r-varselrf. 
* gnu/packages/cran.scm (r-varselrf): New variable.
 2019-03-28 18:23:22 +01:00
Efraim Flashner
1aa662b309
gnu: ogre: Don't use unstable tarball. 
* gnu/packages/graphics.scm (ogre)[source]: Download using git-fetch.
 2019-03-28 12:14:22 +02:00
Efraim Flashner
d5640c587f
gnu: googletest: Don't use unstable tarball. 
* gnu/packages/check.scm (googletest)[source]: Download using git-fetch.
* gnu/packages/crypto.scm (encfs)[arguments]: Adjust accordingly.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Same.
* gnu/packages/terminals.scm (eternalterminal)[arguments]: Same.
* gnu/packages/graphics.scm (ogre)[arguments]: Same. Remove now
unnecessary custom 'pre-build phase.
 2019-03-28 12:14:15 +02:00
Ricardo Wurmus
d98fb5603b
gnu: hpcguix-web: Fix indentation. 
* gnu/packages/web.scm (hpcguix-web): Fix indentation.
 2019-03-27 23:11:20 +01:00
Efraim Flashner
d8de2c01ff
gnu: emacs-emmet-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode)[source]: Download using
git-fetch.
 2019-03-27 23:05:08 +02:00
Efraim Flashner
0f8ff55513
gnu: emacs-tablist: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-tablist)[source]: Download using
git-fetch.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
b762dde997
gnu: emacs-mmm-mode: Update to 0.5.7. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.7.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
d3f6617b26
gnu: emacs-mmm-mode: Remove unnecessary phase. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[arguments]: Remove
unnecessary 'autogen phase.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
8cd07b72e9
gnu: emacs-mmm-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[source]: Don't use
unstable tarball.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
49464d2b16
gnu: emacs-google-maps: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-google-maps)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner
2c19ff18e2
gnu: emacs-direnv: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-direnv)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner
39a46a1f10
gnu: emacs-calfw: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-calfw)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner
b4f96f3b3b
gnu: emacs-autothemer: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[source]: Download using
git-fetch.
 2019-03-27 23:05:05 +02:00
Efraim Flashner
3cf9a85ba7
gnu: emacs-ag: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-ag)[source]: Download using
git-fetch.
 2019-03-27 23:05:02 +02:00
Efraim Flashner
c6abe90478
gnu: font-open-dyslexic: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-open-dyslexic)[source]: Download using
git-fetch.
 2019-03-27 22:25:17 +02:00
Efraim Flashner
1e90e4b0d9
gnu: font-google-material-design-icons: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-google-material-design-icons)[source]:
Download using git-fetch.
 2019-03-27 22:25:17 +02:00
Efraim Flashner
1f07550c86
gnu: font-tamzen: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-tamzen)[source]: Download using
git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
 2019-03-27 22:25:16 +02:00
Efraim Flashner
c2426dbddc
gnu: font-fira-sans: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-fira-sans)[source]: Download using
git-fetch.
 2019-03-27 22:25:16 +02:00
Efraim Flashner
8f4dccf75d
gnu: font-adobe-source-han-sans: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-adobe-source-han-sans)[source]: Download
using git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
 2019-03-27 22:25:13 +02:00
Ricardo Wurmus
3d17dc5d8f
gnu: r-geometry: Update to 0.4.1. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.1.
[propagated-inputs]: Fix typo.
 2019-03-27 21:00:28 +01:00
Ricardo Wurmus
1d7022f706
gnu: r-feather: Update to 0.3.3. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.3.
 2019-03-27 21:00:28 +01:00
Nicolas Goaziou
24540c310f
gnu: Add emacs-relint. 
* gnu/packages/emacs-xyz.scm (emacs-relint): New variable.
 2019-03-27 20:41:29 +01:00
Brian Leung
c881ed8698
gnu: Add emacs-zones. 
* gnu/packages/emacs-xyz.scm (emacs-zones): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-27 22:18:32 +03:00
Ricardo Wurmus
f8295ee6de
gnu: Add r-clusterprofiler. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus
9c30cf65d2
gnu: Add r-enrichplot. 
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus
305050b56d
gnu: Add r-dose. 
* gnu/packages/bioconductor.scm (r-dose): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus
11f226e124
gnu: Add r-ggraph. 
* gnu/packages/cran.scm (r-ggraph): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
b5b0a2ff49
gnu: Add r-europepmc. 
* gnu/packages/cran.scm (r-europepmc): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
83f43284c3
gnu: Add r-ggforce. 
* gnu/packages/cran.scm (r-ggforce): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
d4ff09af0d
gnu: Add r-urltools. 
* gnu/packages/cran.scm (r-urltools): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
09dde7fb01
gnu: Add r-polyclip. 
* gnu/packages/cran.scm (r-polyclip): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
91e06bedf8
gnu: Add r-tweenr. 
* gnu/packages/cran.scm (r-tweenr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
85431ca3a8
gnu: Add r-triebeard. 
* gnu/packages/cran.scm (r-triebeard): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
e25828839d
gnu: Add r-ggplotify. 
* gnu/packages/cran.scm (r-ggplotify): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
1c59ec707e
gnu: Add r-farver. 
* gnu/packages/cran.scm (r-farver): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
585d5ae0fb
gnu: Add r-gridgraphics. 
* gnu/packages/cran.scm (r-gridgraphics): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
f8a5af4653
gnu: Add r-do-db. 
* gnu/packages/bioconductor.scm (r-do-db): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
af26c7ae70
gnu: Add r-fgsea. 
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
0d50d0df08
gnu: Add r-msigdbr. 
* gnu/packages/cran.scm (r-msigdbr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
2d70460892
gnu: Add r-xkcd. 
* gnu/packages/cran.scm (r-xkcd): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
2331bf2a64
gnu: Add r-extrafont. 
* gnu/packages/cran.scm (r-extrafont): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus
b6933ea634
gnu: Add r-extrafontdb. 
* gnu/packages/cran.scm (r-extrafontdb): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus
81df4e1e98
gnu: Add r-rttf2pt1. 
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
 2019-03-27 16:17:18 +01:00
Ludovic Courtès
06013a45aa
gnu: emacs-debbugs: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
 2019-03-27 14:59:42 +01:00
Ricardo Wurmus
18c51cf3d3
gnu: Add r-xyz. 
* gnu/packages/cran.scm (r-xyz): New variable.
 2019-03-27 14:43:26 +01:00
Ludovic Courtès
45c0d1d790
vm: Ask QEMU for more RAM in the VM that makes ISO9660 images. 
* gnu/system/vm.scm (iso9660-image): Pass #:memory-size to
'expression->derivation-in-linux-vm'.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
391e0d65d7
services: Deprecate 'xfce-desktop-service'. 
* gnu/services/desktop.scm (xfce-desktop-service-type)[default-value]
[description]: New fields.
(xfce-desktop-service): Deprecate.
* gnu/system/examples/desktop.tmpl: Use the (service …) form.
* gnu/installer/services.scm (%desktop-environments): Add TODO comment.
* doc/guix.texi (Desktop Services): Adjust accordingly, and fix spelling
of "Xfce" throughout.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
ee05cc7fe3
services: Deprecate 'gnome-desktop-service'. 
* gnu/services/desktop.scm (gnome-desktop-service-type)[default-value]:
New field.
(gnome-desktop-service): Deprecate.
* gnu/installer/services.scm (%desktop-environments): Use the (service …)
form for GNOME.
* gnu/system/examples/desktop.tmpl: Likewise.
* doc/guix.texi (Desktop Services): Adjust accordingly.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
1c155ec76b
installer: Use the (service …) form for MATE. 
* gnu/installer/services.scm (%desktop-environments): Use
'mate-desktop-service-type' for MATE.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
c73e554c3f
installer: Ask for confirmation before formatting partitions. 
* gnu/installer/newt/page.scm (run-confirmation-page): New procedure.
* gnu/installer/newt/partition.scm (draw-formatting-page): Call it.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
50247be5f4
installer: Produce an 'initrd-modules' field if needed. 
* gnu/installer/parted.scm (root-user-partition?): New procedure.
(bootloader-configuration): Use it.
(user-partition-missing-modules, initrd-configuration): New procedures.
(user-partitions->configuration): Call 'initrd-configuration'.o
* gnu/installer.scm (not-config?): Rename to...
(module-to-import?): ... this.  Add cases to exclude non-installer and
non-build (gnu …) modules.
(installer-program)[installer-builder]: Add GUIX to the extension list.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
54043bf23f
installer: Emit 'bootloader' field before 'swap-devices'. 
* gnu/installer/parted.scm (user-partitions->configuration): Move
'bootloader' section above 'swap-devices'.
 2019-03-27 11:54:05 +01:00
Pierre Neidhardt
37099f5844
gnu: Add emacs-webfeeder. 
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
 2019-03-27 11:33:09 +01:00
Ricardo Wurmus
58d8225ddb
gnu: trim-galore: Add pigz. 
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
 2019-03-27 11:32:08 +01:00
Ricardo Wurmus
5f1e31094d
gnu: trim-galore: Fix test for Python. 
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
 2019-03-27 11:28:38 +01:00
Ricardo Wurmus
2a509880d4
gnu: hdf-java: Adjust indentation. 
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
 2019-03-27 10:47:34 +01:00
Ricardo Wurmus
64dc8b0bfd
gnu: hdf-java: Fix build. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
 2019-03-27 10:13:46 +01:00
Ricardo Wurmus
9286c0f7e8
gnu: hdf-java: Use INVOKE. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
 2019-03-27 10:12:57 +01:00
Ricardo Wurmus
dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
a12c527d3c
gnu: r-hdf5r: Update to 1.1.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
a7332d1a2f
gnu: r-caret: Update to 6.0-82. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
733b3c59da
gnu: r-gtable: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
fc64504f2d
gnu: grantlee: Delete broken tests. 
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
 2019-03-27 09:33:50 +01:00
Kei Kebreau
4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl. 
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
 2019-03-26 20:59:15 -04:00
Pierre Langlois
4dcf221c85
gnu: qjackctl: Re-enable xunique. 
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.

See d54a1da43f/ChangeLog (L9)

* gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique"
from configure-flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-27 00:09:38 +01:00
Ricardo Wurmus
dd2f0cdba1
gnu: python-django-overextends: Use INVOKE. 
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
 2019-03-27 00:04:07 +01:00
Ricardo Wurmus
de6be02379
gnu: python-django-contact-form: Use INVOKE. 
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
 2019-03-27 00:03:31 +01:00
Ricardo Wurmus
7cdc7e579b
gnu: fritzing: Update to 0.9.3b. 
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
 2019-03-26 23:58:33 +01:00
Ricardo Wurmus
68631e037b
gnu: ldc: Use INVOKE. 
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE. 
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
27cd31e6a5
gnu: open-adventure: Use INVOKE. 
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
7b67bb1fab
gnu: 0ad: Use INVOKE. 
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
 2019-03-26 23:13:51 +01:00
Pierre Neidhardt
c771b799bd
gnu: Add jami-client-gnome. 
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt
b630967247
gnu: Add libringclient. 
* gnu/packages/telephony.scm (libringclient): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt
1bfcb19bc3
gnu: Add libring. 
* gnu/packages/telephony.scm (libring): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt
915829e662
gnu: Add pjproject-jami. 
* gnu/packages/telephony.scm (pjproject-jami): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt
bd4b6f4164
gnu: Add pjproject. 
* gnu/packages/telephony.scm (pjproject): New variable.
 2019-03-26 19:17:01 +01:00
Ludovic Courtès
863519f660
gnu: current-guix: Delay effectful bits. 
* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'.
 2019-03-26 18:11:52 +01:00
Ricardo Wurmus
28d32817d8
gnu: python-scanpy: Update to 1.4. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.
[source]: Fetch from git.
[arguments]: Disable broken tests.
[native-inputs]: Add python-pytest.
[home-page]: Use HTTPS.
 2019-03-26 18:06:35 +01:00
Ricardo Wurmus
8c9372c124
gnu: python-anndata: Update to 0.6.18. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.6.18.
 2019-03-26 17:13:13 +01:00
Ricardo Wurmus
fdc316f374
gnu: trim-galore: Update to 0.6.1. 
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
 2019-03-26 16:40:42 +01:00
Ricardo Wurmus
9ac17c6242
gnu: cutadapt: Update to 2.1. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
 2019-03-26 16:40:42 +01:00
Ricardo Wurmus
24d6498972
gnu: python-xopen: Update to 0.5.0. 
* gnu/packages/python-xyz.scm (python-xopen): Update to 0.5.0.
 2019-03-26 16:40:42 +01:00
Pierre Neidhardt
f95e33a7ad
gnu: edgar: Rename package to the-legend-of-edgar. 
* gnu/packages/games.scm (edgar): Define in terms of
'deprecated-package'.
(the-legend-of-edgar): New variable, formerly known as "edgar".
 2019-03-26 13:44:01 +01:00
Pierre Neidhardt
b1aee9fce2
gnu: btanks: Rename package to battle-tanks. 
* gnu/packages/games.scm (btanks): Define in terms of
'deprecated-package'.
(battle-tanks): New variable, formerly known as "btanks".
 2019-03-26 13:44:00 +01:00
Pierre Neidhardt
f6a21d61de
gnu: tome4: Rename package to tales-of-maj-eyal. 
* gnu/packages/games.scm (tome4): Define in terms of
'deprecated-package'.
(tales-of-maj-eyal): New variable, formerly known as "tome4".
 2019-03-26 13:44:00 +01:00