Ricardo Wurmus
|
03a415365a
|
gnu: r-ensembldb: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.1.
|
2018-11-09 19:41:54 +01:00 |
|
Ricardo Wurmus
|
88514b9124
|
gnu: r-biostrings: Update to 2.50.1.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.1.
|
2018-11-09 19:41:53 +01:00 |
|
Ricardo Wurmus
|
77bea84ba1
|
gnu: r-biocviews: Update to 1.50.5.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.5.
|
2018-11-09 19:41:53 +01:00 |
|
Ricardo Wurmus
|
a1e83a9856
|
gnu: pplacer-scripts: Use INVOKE.
* gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 10:06:35 +01:00 |
|
Ricardo Wurmus
|
ce49fdcce9
|
gnu: roary: Use INVOKE.
* gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T
unconditionally.
|
2018-11-08 09:58:05 +01:00 |
|
Ricardo Wurmus
|
a9542937c8
|
gnu: seek: Use INVOKE.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T
unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
|
2018-11-08 09:54:22 +01:00 |
|
Ricardo Wurmus
|
9f527c9199
|
gnu: sailfish: Use INVOKE.
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of
SYSTEM*.
|
2018-11-08 09:52:46 +01:00 |
|
Ricardo Wurmus
|
86c6928ea3
|
gnu: vsearch: Update to 2.9.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
|
2018-11-08 09:46:42 +01:00 |
|
Ricardo Wurmus
|
15c9609482
|
gnu: sra-tools: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3.
[arguments]: Remove build phase patch-away-glibc-conflict.
|
2018-11-08 09:46:05 +01:00 |
|
Ricardo Wurmus
|
b17333414f
|
gnu: plink-ng: Fetch sources from git.
* gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git.
|
2018-11-08 09:30:59 +01:00 |
|
Ricardo Wurmus
|
87408854ec
|
gnu: ncbi-vdb: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3.
|
2018-11-08 09:30:16 +01:00 |
|
Ricardo Wurmus
|
8d3eaa9262
|
gnu: ngs-sdk: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.3.
|
2018-11-08 09:29:58 +01:00 |
|
Ricardo Wurmus
|
3da3cedf76
|
gnu: ngs-sdk: Use INVOKE.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:15:05 +01:00 |
|
Ricardo Wurmus
|
e78e54d029
|
gnu: emboss: Use INVOKE.
* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:14:09 +01:00 |
|
Ricardo Wurmus
|
8b685c4720
|
gnu: taxtastic: Use INVOKE.
* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:13:35 +01:00 |
|
Ricardo Wurmus
|
2e2d88539c
|
gnu: sra-tools: Use INVOKE.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:12:43 +01:00 |
|
Ricardo Wurmus
|
179416467f
|
gnu: muscle: Use INVOKE.
* gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:11:38 +01:00 |
|
Ricardo Wurmus
|
0881d62f25
|
gnu: newick-utils: Remove custom autoconf phase.
* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
|
2018-11-08 09:10:58 +01:00 |
|
Ricardo Wurmus
|
e35dce0170
|
gnu: mash: Remove custom autoconf phase.
* gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
|
2018-11-08 09:10:20 +01:00 |
|
Ricardo Wurmus
|
31c41a8cfe
|
gnu: vsearch: Remove custom autogen phase.
* gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
|
2018-11-08 09:04:34 +01:00 |
|
Ricardo Wurmus
|
c527d36f02
|
gnu: java-picard-1.113: Use INVOKE.
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE
and return #T unconditionally.
|
2018-11-08 09:02:34 +01:00 |
|
Ricardo Wurmus
|
e438c96558
|
gnu: fraggenescan: Use INVOKE.
* gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in
build phases and return #T unconditionally.
|
2018-11-08 08:58:46 +01:00 |
|
Ricardo Wurmus
|
c098c49b3e
|
gnu: sailfish: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
|
2018-11-08 08:53:54 +01:00 |
|
Ricardo Wurmus
|
4031e7f1ec
|
gnu: ngs-sdk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
|
2018-11-08 08:53:53 +01:00 |
|
Ricardo Wurmus
|
6a7d9ee39f
|
gnu: ncbi-vdb: Use INVOKE and end phases on #T.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and
unconditionally end phases with #T.
|
2018-11-08 08:53:53 +01:00 |
|
Ricardo Wurmus
|
3398dfb764
|
gnu: ncbi-vdb: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
|
2018-11-08 08:53:53 +01:00 |
|
Ricardo Wurmus
|
e0f1aa2d2b
|
gnu: tadbit: Fetch sources from git.
* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git.
[version]: Use "2.0.0" instead of "2.0".
|
2018-11-08 08:53:50 +01:00 |
|
Ricardo Wurmus
|
f3f34b132c
|
gnu: filevercmp: Fetch sources from git.
* gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git.
[arguments]: Add #T to the end of the install phase.
|
2018-11-07 23:17:36 +01:00 |
|
Ricardo Wurmus
|
3b888065da
|
gnu: ritornello: Update to 2.0.1.
* gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1.
[arguments]: Adjust file patching.
|
2018-11-07 23:17:36 +01:00 |
|
Ricardo Wurmus
|
7145f4e519
|
gnu: ritornello: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ritornello)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
e0a8fc85dd
|
gnu: snap-aligner: Fetch sources from git.
* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
6236524409
|
gnu: sortmerna: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sortmerna)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
273df99d7d
|
gnu: vsearch: Fetch source from git.
* gnu/packages/bioinformatics.scm (vsearch)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
67caa4b773
|
gnu: preseq: Update to 2.0.3.
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.3.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
37e285be43
|
gnu: preseq: Fetch sources from git.
* gnu/packages/bioinformatics.scm (preseq)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
63f3255e13
|
gnu: seqtk: Update to 1.3.
* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
[source]: Remove outdated snippet.
[arguments]: Use INVOKE and return #T unconditionally.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
019fcdf20a
|
gnu: seqtk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (seqtk)[source]: Fetch from git.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
b9d0c3564b
|
gnu: raxml: Update to 8.2.12.
* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.12.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
d9ba126d17
|
gnu: python2-biom-format: Fix build.
This is a follow-up to commit 239716fb0b.
* gnu/packages/bioinformatics.scm (python2-biom-format)[arguments]: Modify
phases of base package.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
4715d4af17
|
gnu: raxml: Fetch sources from git.
* gnu/packages/bioinformatics.scm (raxml)[source]: Fetch from git.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
5e242b02c3
|
gnu: pyicoteo: Fetch sources from git.
* gnu/packages/bioinformatics.scm (pyicoteo)[source]: Fetch from git.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
2b773a9273
|
gnu: sra-tools: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sra-tools)[source]: Fetch from git.
|
2018-11-07 21:41:56 +01:00 |
|
Ricardo Wurmus
|
55698df260
|
gnu: libgff: Fetch sources from git.
* gnu/packages/bioinformatics.scm (libgff)[source]: Fetch from git.
|
2018-11-07 21:41:56 +01:00 |
|
Ricardo Wurmus
|
4257c10ad2
|
gnu: kentutils: Fetch sources from git.
* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
1a20bcadf3
|
gnu: r-seqgl: Fetch sources from git.
* gnu/packages/bioinformatics.scm (r-seqgl)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
a2b9d6a8d0
|
gnu: pplacer: Fetch sources from git.
* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git.
[arguments]: Make files writable; use INVOKE.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
6052264b56
|
gnu: minced: Update to 0.3.2.
* gnu/packages/bioinformatics.scm (minced): Update to 0.3.2.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
9d94ca0ebf
|
gnu: minced: Fetch sources from git.
* gnu/packages/bioinformatics.scm (minced)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
b58d9e4aa2
|
gnu: metabat: Fetch sources from git.
* gnu/packages/bioinformatics.scm (metabat)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
5c1f35e71b
|
gnu: mash: Update to 2.1.
* gnu/packages/bioinformatics.scm (mash): Update to 2.1.
|
2018-11-07 21:41:55 +01:00 |
|