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Author SHA1 Message Date
Ricardo Wurmus
0006a9a83a
gnu: Add r-deconvr. 
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
 2022-06-12 22:51:23 +02:00
Ricardo Wurmus
eec1724ea6
gnu: Add r-rsq. 
* gnu/packages/cran.scm (r-rsq): New variable.
 2022-06-12 22:51:23 +02:00
Ludovic Courtès
622545de6c
Merge branch 'master' into staging 2022-06-12 22:49:47 +02:00
jgart
9c036f2dfb
gnu: Add emacs-corfu-doc-terminal. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-06-12 13:19:24 +02:00
jgart
a473d74ff1
gnu: Add emacs-corfu-terminal. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-06-12 13:19:23 +02:00
Efraim Flashner
e22b55f0b9
gnu: llvm-14: Fix configure-flags for cross-compiling. 
* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in
configure-flags when cross-compiling llvm.
 2022-06-12 13:50:47 +03:00
Efraim Flashner
3cbef19a90
gnu: zig: Limit to 64bit systems. 
* gnu/packages/zig.scm (zig)[supported-systems]: New field.
 2022-06-12 13:50:47 +03:00
Efraim Flashner
2a34333d0c
guix: packages: Add %32bit-supported-systems, %64bit-supported-systems. 
* guix/packages.scm (%32bit-supported-systems,
%64bit-supported-systems): New variables.
(%supported-systems): Rewrite using %32bit-supported-systems,
%64bit-supported-systems.
 2022-06-12 13:50:43 +03:00
Ricardo Wurmus
541823b318
gnu: r-hdf5array: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus
a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus
a76b657d93
gnu: r-rsubread: Update to 2.10.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
 2022-06-12 11:16:30 +02:00
Ricardo Wurmus
41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus
640b45d73c
gnu: r-monocle: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus
8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
 2022-06-12 11:16:29 +02:00
Ricardo Wurmus
46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
7a344aa9e2
gnu: r-keggrest: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
15e26f97d9
gnu: r-biocparallel: Update to 1.30.3. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
 2022-06-12 11:16:28 +02:00
Ricardo Wurmus
f5899fe58b
gnu: r-deepsnv: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
 2022-06-12 11:16:23 +02:00
Julien Lepiller
965d54e344
gnu: java-plexus-component-metadata: Fix package. 
* gnu/packages/java.scm (java-plexus-component-metadata): Apply fix for
  newer jdom.
 2022-06-12 09:07:17 +02:00
Ludovic Courtès
091eb323ba
Merge branch 'master' into staging 2022-06-08 14:53:16 +02:00
jgart via Guix-patches via
0c5299200f
gnu: Add emacs-pyimport. 
* gnu/packages/emacs-xyz.scm (emacs-pyimport): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-08 00:14:41 +02:00
Stefan Reichör
7fbf02b854
gnu: Add emacs-toodoo. 
* gnu/packages/emacs-xyz.scm (emacs-toodoo): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-08 00:09:04 +02:00
Thomas Albers
1ba8c74de3
gnu: Add emacs-opencl-mode. 
* gnu/packages/emacs-xyz.scm (emacs-opencl-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-08 00:02:53 +02:00
Ludovic Courtès
05fef7bfc6
gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6. 
The previous method of making a union with symlinks would work with 13.4
but not with 13.6, which has an extra 'canonicalize_path' call in
'find_my_exec'.

* gnu/packages/databases.scm (timescaledb)[arguments]: In
'prepare-tests', pass #:symlink argument to 'union-build'.
 2022-06-07 23:58:16 +02:00
Ludovic Courtès
b422687cbd
gnu: postgresql@10: Fix manual compilation. 
This is a followup to f0227a18c2.

* gnu/packages/databases.scm (postgresql-10)[native-inputs]: New field.
 2022-06-05 17:00:18 +02:00
Ludovic Courtès
5035be651a
gnu: docbook-sgml: Add 4.2. 
* gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New
variables.
(docbook-sgml): Make an alias to 'docbook-sgml-4.1'.
 2022-06-05 17:00:18 +02:00
Ludovic Courtès
5b6b4ade7c
gnu: go: Make 'make-go-std' memoizing. 
* gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'.
 2022-06-05 17:00:18 +02:00
Ludovic Courtès
fb21085d25
gnu: go-std: Make public. 
* gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New
variables.
 2022-06-05 17:00:17 +02:00
Tobias Geerinckx-Rice
75eae3fd78
gnu: emacs-rainbow-mode: Update to 1.0.6. 
* gnu/packages/emacs-xyz.scm (emacs-rainbow-mode): Update to 1.0.6.
 2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice
1dc22f19e8
gnu: emacs-undo-tree: Update to 0.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-undo-tree): Update to 0.8.2.
 2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice
4fc248ada2
gnu: emacs-ghub: Update to 3.5.6. 
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.5.6.
 2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice
9105c60f0d
gnu: putty: Update to 0.77. 
* gnu/packages/networking.scm (putty): Update to 0.77.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old 'chdir phase.  Add a custom 'check phase.
[native-inputs]: Add perl.
 2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice
66c5e40762
gnu: emacs-d-mode: Update to 2.0.12. 
* gnu/packages/emacs-xyz.scm (emacs-d-mode): Update to 2.0.12.
 2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice
8578b8d8b5
gnu: openmpi: Update to 4.1.4. 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.4.
 2022-06-05 02:00:00 +02:00
Jai Vetrivelan
5a42df6e49
gnu: Add emacs-xah-fly-keys. 
* gnu/packages/emacs-xyz.scm (emacs-xah-fly-keys): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:55:39 +02:00
Aleksandr Vityazev
8e6228d499
gnu: emacs-plz: Update to 0.1. 
* gnu/packages/emacs-xyz (emacs-plz): Update to 0.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:45:10 +02:00
Rostislav Svoboda
899c29805f
gnu: emacs-evil-collection: Update to 0.0.8. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.8.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:40:29 +02:00
André A. Gomes
c53a92ca2d
gnu: emacs-modus-themes: Update to 2.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.4.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:38:27 +02:00
jgart via Guix-patches via
5f4946fac5
gnu: Add emacs-popon. 
* gnu/packages/emacs-xyz.scm (emacs-popon): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-06-07 21:01:41 +02:00
derekchuank@outlook.com
b42ed3b77c
gnu: Add xwhite. 
* gnu/packages/xdisorg.scm (xwhite): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-07 18:29:13 +02:00
Foo Chuan Wei
d78478758e
gnu: Add edlin. 
* gnu/packages/text-editors.scm (edlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-07 18:29:13 +02:00
Felix Lechner
2c8c9403ae
gnu: nyacc: Update to 1.07.0. 
* gnu/packages/mes.scm (nyacc): Update to 1.07.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-07 18:29:12 +02:00
Ludovic Courtès
6764455a4b
.dir-locals: Adjust to bug-reference-mode in Emacs 28. 
* .dir-locals.el: Adjust 'bug-reference-bug-regexp' and
'bug-reference-url-format' to Emacs 28.
 2022-06-07 18:29:12 +02:00
Ludovic Courtès
71388e1fda
gnu: guile-fibers: Update to 1.1.1. 
* gnu/packages/guile-xyz.scm (guile-fibers-1.1): Update to 1.1.1.
 2022-06-07 18:29:12 +02:00
Efraim Flashner
413b85ad4f
gnu: Remove unused patch. 
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-06-07 19:11:48 +03:00
Vagrant Cascadian
96d47797dc
gnu: python-debian: Set version to build reproducibly. 
* gnu/packages/python-xyz.scm (python-debian)[arguments]: Add 'set-version
  phase.
 2022-06-07 08:42:41 -07:00
Maxim Cournoyer
ceeb2bfcae
gnu: offlate: Fix build. 
* gnu/packages/python-xyz.scm (offlate)
[phases]{patch-for-pygit2}: New phase.
 2022-06-07 09:11:56 -04:00
Maxim Cournoyer
e3d2650726
gnu: python-pygit2: Update to 1.9.2 and enable tests. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.9.2.
[tests?]: Delete argument.
[phases]{check}: New phase override.
[description]: Fix sentence.
 2022-06-07 09:11:55 -04:00
Maxim Cournoyer
5125d005ed
gnu: python-pygmsh: Update to 7.1.17. 
* gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.17.
[source]: Remove snippet and modules fields.
[origin]: Prefix tag by "v".
[phases]: Delete trailing #t.
{workaround-gmsh-detection-failure}: New phase.
{build, install}: New phase overrides.
{check}: Honor tests and remove extraneous add-installed-pythonpath call.
[native-inputs]: Remove wheel.  Add python-pypa-build and python-flit-core.
[propagated-inputs]: Remove python-importlib-metadata.
 2022-06-07 09:11:55 -04:00