Thomas Ieong
aab6ea6f41
gnu: Add go-github-com-matryer-try.
...
* gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1
2024-01-30 22:58:22 +00:00
Thomas Ieong
b998d58221
gnu: Add go-github-com-djherbis-atime.
...
* gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d
2024-01-30 22:58:22 +00:00
Sharlatan Hellseher
376bba6030
gnu: Add (gnu packages golang-xyz) module.
...
* gnu/packages/golang-xyz.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope.
Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
2024-01-30 22:58:22 +00:00
Sharlatan Hellseher
fb2b72a5f3
gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web).
...
Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by
the owner on Feb 27, 2023.
* gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.
Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103
2024-01-30 22:58:22 +00:00
Ricardo Wurmus
f6bbee5f05
gnu: axoloti-patcher: Add missing headers.
...
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic
headers in search paths.
Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a
2024-01-30 22:44:43 +01:00
Ricardo Wurmus
c2dc19aecc
gnu: axoloti-patcher: Use G-expression.
...
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression;
delete 'make-git-checkout-writable phase.
Change-Id: I4f9b98351f1752391211f1aed84d484184d32771
2024-01-30 22:44:09 +01:00
Artyom V. Poptsov
bed3a0b547
gnu: yggdrasil: Update to 0.5.5.
...
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.5.
Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-01-30 17:11:54 +01:00
David Thompson
a901e950dd
gnu: guile-hoot: Update to 0.3.0.
...
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0.
Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd
2024-01-30 11:08:37 -05:00
Ricardo Wurmus
7cdad00e30
gnu: r-scran: Update to 1.30.2.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2.
Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
2024-01-30 16:59:52 +01:00
Ricardo Wurmus
aa7950070b
gnu: r-bioccheck: Update to 1.38.2.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2.
[propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest.
Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
8d8eec7f9d
gnu: r-flowcore: Update to 2.14.1.
...
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1.
Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
9e1e462746
gnu: r-rsubread: Update to 2.16.1.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1.
Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
ca6e432089
gnu: r-edger: Update to 4.0.12.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12.
Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
4df162962d
gnu: r-biostrings: Update to 2.70.2.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2.
Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
1c27a3a8a8
gnu: r-biomart: Update to 2.58.1.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1.
Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
2024-01-30 16:59:51 +01:00
Ricardo Wurmus
6f11ca52f1
gnu: r-robustbase: Update to 0.99-2.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2.
Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
ef5640f763
gnu: r-viridis: Update to 0.6.5.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5.
Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
c72ceba47f
gnu: r-commonmark: Update to 1.9.1.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1.
Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
e6847d7a2f
gnu: r-data-table: Update to 1.15.0.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0.
Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
71936c6145
gnu: r-tfruns: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2.
Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
08d6f49857
gnu: r-spatstat-geom: Update to 3.2-8.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8.
Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
281db78112
gnu: r-iheatmapr: Update to 0.7.1.
...
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1.
Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
2024-01-30 15:48:57 +01:00
Ricardo Wurmus
2435d457e8
gnu: r-emoa: Update to 0.5-2.
...
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2.
Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
6bde30b814
gnu: r-tidygraph: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1.
Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
a03ad38b2f
gnu: r-xgboost: Update to 1.7.7.1.
...
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1.
Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
50e728fbab
gnu: r-yulab-utils: Update to 0.1.4.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4.
Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
48f41d06e8
gnu: r-bqtl: Update to 1.0-36.
...
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-36.
Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
2bb1d89f97
gnu: r-listenv: Update to 0.9.1.
...
* gnu/packages/cran.scm (r-listenv): Update to 0.9.1.
Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
2024-01-30 15:48:56 +01:00
Ricardo Wurmus
8bad30c244
gnu: r-phylobase: Update to 0.8.12.
...
* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12.
Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
b7e3c82000
gnu: r-densityclust: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
02931399e8
gnu: r-interp: Update to 1.1-6.
...
* gnu/packages/cran.scm (r-interp): Update to 1.1-6.
Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
8b0a49ad4e
gnu: r-zip: Update to 2.3.1.
...
* gnu/packages/cran.scm (r-zip): Update to 2.3.1.
Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
51d7fae43a
gnu: r-nestedcv: Update to 0.7.4.
...
* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4.
[propagated-inputs]: Add r-rhpcblasctl.
Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
775ae73c3d
gnu: r-laeken: Update to 0.5.3.
...
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3.
Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
f3af65b8d0
gnu: r-sp: Update to 2.1-3.
...
* gnu/packages/cran.scm (r-sp): Update to 2.1-3.
Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
5701d13103
gnu: r-powerlaw: Update to 0.80.0.
...
* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0.
Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
854d1be754
gnu: r-httpuv: Update to 1.6.14.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14.
Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
51ca656726
gnu: r-ga: Update to 3.2.4.
...
* gnu/packages/cran.scm (r-ga): Update to 3.2.4.
Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
cd9e88c9d0
gnu: r-ggm: Update to 2.5.1.
...
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.
Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
1541c1bb17
gnu: r-rjava: Update to 1.0-11.
...
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11.
[source]: Remove snippet.
[arguments]: Remove 'replace-bundled-minified-JavaScript phase.
[native-inputs]: Remove esbuild.
Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
2024-01-30 15:48:08 +01:00
Ricardo Wurmus
1bb0d6355c
gnu: r-catdata: Update to 1.2.4.
...
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4.
[native-inputs]: Add r-knitr.
Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
2024-01-30 15:41:54 +01:00
Ricardo Wurmus
c3e2892558
gnu: r-r-devices: Update to 2.17.2.
...
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2.
[arguments]: Add 'set-HOME phase.
[native-inputs]: Add r-r-rsp.
Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
2024-01-30 15:41:07 +01:00
Ricardo Wurmus
67c1a96196
gnu: r-igraph: Update to 2.0.1.1.
...
* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1.
[properties]: Tell updater to keep extra native input "which".
[native-inputs]: Add pkg-config and which.
Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
2024-01-30 15:36:03 +01:00
Ricardo Wurmus
788657b62d
gnu: r-antiword: Update to 1.3.3.
...
* gnu/packages/cran.scm (r-antiword): Update to 1.3.3.
[properties]: Tell updater not to remove "antiword" input.
[arguments]: Use G-expression.
Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
2024-01-30 15:31:07 +01:00
Ricardo Wurmus
a4e75305e2
gnu: r-sapa: Patch call of dstebz routine.
...
* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.
Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
2024-01-30 15:16:20 +01:00
Ricardo Wurmus
a874d44053
gnu: r-with-tests: Prevent compression of libraries.
...
Compression prevents Guix from detecting references.
This is a follow-up to commit ff0d34a29b
2024-01-30 15:16:20 +01:00
Ricardo Wurmus
afe677a623
gnu: r-minimal, r-with-tests: Use G-expressions.
...
* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use
G-expressions.
Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
2024-01-30 15:16:20 +01:00
Efraim Flashner
9f1ab898c3
gnu: python-scipy: Enable building on more architectures.
...
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.
Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
2024-01-30 13:43:32 +02:00
Efraim Flashner
7bf98da98b
gnu: libhdate: Fix pkg-config file.
...
* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust
the pkg-config file to have the correct prefix.
Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
2024-01-30 09:25:32 +02:00
Ian Eure
144c95032e
gnu: emacspeak: Update to 59.0.
...
* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0.
[source]: Switch to git-fetch.
Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-30 00:40:15 +01:00
