* guix/import/cran.scm (%cran-canonical-url): New variable.
(description->package): Construct home-page using canonical URL.
Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu/packages/cups.scm (foo2zjs)[inputs]: Add coreutils and sed.
[arguments]: Add new phases ''make-install-dirs', 'wrap-wrappers', and
'install-cups-filters-symlinks'.
Signed-off-by: Leo Famulari <leo@famulari.name>
Includes fixes for CVE-2020-16042, CVE-2020-26971, CVE-2020-26973,
CVE-2020-26974, CVE-2020-26978, CVE-2020-35111, CVE-2020-35112, and
CVE-2020-35113.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
This avoids repeated (mkdir-p "/gnu/store/.links") calls when
deduplicating lots of files.
* guix/store/deduplication.scm (deduplicate): Remove initial call to
'mkdir-p'. Add ENOENT case in 'link' exception handler. Reindent.
* tests/store-deduplication.scm ("deduplicate, ENOSPC"): Check
for (<= links 4) to account for the initial 'link' call.
* guix/store/database.scm (timestamp): New procedure.
(sqlite-register): Use it as the default for #:time.
(register-items): Likewise for #:registeration-time.
Fixes <https://bugs.gnu.org/44760>.
Previously, the 'register-path' call would re-traverse ITEM to compute
its nar hash, even though that hash is already known in the initial
store. This patch also avoids repeated opening/closing of the
database.
* guix/store/database.scm (call-with-database): Export.
* guix/scripts/system.scm (copy-item): Add 'db' parameter. Call
'sqlite-register' instead of 'register-path'.
(copy-closure): Remove redundant call to 'references*'. Call
'call-with-database' and pass the database to 'copy-item'.
Partly fixes <https://bugs.gnu.org/44760>.
* guix/build/store-copy.scm (copy-store-item): New procedure.
(populate-store): Use it instead of the inline 'copy-recursively' call.
* guix/scripts/system.scm (copy-item): Likewise.
Pass #:reset-timestamps? and #:deduplicate? to 'register-path'.
It is now up to the caller to deduplicate store contents.
* guix/store/database.scm (register-items): Remove #:deduplicate?
parameter and call to 'deduplicate'.
(register-path): Call 'deduplicate' when #:deduplicate? is true.
* gnu/build/image.scm (register-closure): Adjust call accordingly.
* gnu/build/vm.scm (register-closure): Likewise.
* guix/nar.scm (finalize-store-file): Likewise.
* guix/scripts/pack.scm (store-database): Likewise.
Until now deduplication was performed as an additional pass after
copying files, which involve re-traversing all the files that had just
been copied.
* guix/store/deduplication.scm (copy-file/deduplicate): New procedure.
* tests/store-deduplication.scm ("copy-file/deduplicate"): New test.
* guix/build/store-copy.scm (populate-store): Add #:deduplicate?
parameter and honor it.
* tests/gexp.scm ("gexp->derivation, store copy"): Pass #:deduplicate? #f
to 'populate-store'.
* gnu/build/image.scm (initialize-root-partition): Pass #:deduplicate?
to 'populate-store'. Pass #:deduplicate? #f to 'register-closure'.
* gnu/build/vm.scm (root-partition-initializer): Likewise.
* gnu/build/install.scm (populate-single-profile-directory): Pass
#:deduplicate? #f to 'populate-store'.
* gnu/build/linux-initrd.scm (build-initrd): Likewise.
* guix/scripts/pack.scm (self-contained-tarball)[import-module?]: New
procedure.
[build]: Pass it as an argument to 'source-module-closure'.
* guix/scripts/pack.scm (squashfs-image)[build]: Wrap in
'with-extensions'.
* gnu/system/linux-initrd.scm (expression->initrd)[import-module?]: New
procedure.
[builder]: Pass it to 'source-module-closure'.
* gnu/system/install.scm (cow-store-service-type)[import-module?]: New
procedure. Pass it to 'source-module-closure'.
The assumption now is that the caller took care of resetting timestamps
and permissions.
* guix/store/database.scm (register-items): Remove #:reset-timestamps?
parameter and the call to 'reset-timestamps'.
(register-path): Adjust accordingly and add call to 'reset-timestamps'.
* gnu/build/image.scm (register-closure): Remove #:reset-timestamps?
parameter to 'register-items'.
* gnu/build/vm.scm (register-closure): Likewise.
* guix/nar.scm (finalize-store-file): Adjust accordingly.
* guix/scripts/pack.scm (store-database)[build]: Likewise.
Until now, 'populate-store' would reset permissions but not timestamps,
so callers would resort to going through an extra directory traversal to
reset timestamps.
* guix/build/store-copy.scm (reset-permissions): Remove.
(copy-recursively): New procedure.
(populate-store): Pass #:keep-permissions? to 'copy-recursively'.
Remove call to 'reset-permissions'.
* tests/gexp.scm ("gexp->derivation, store copy"): In BUILD-DRV, check
whether 'populate-store' canonicalizes permissions and timestamps.
* gnu/build/image.scm (initialize-root-partition): Pass #:reset-timestamps? #f
to 'register-closure'.
* gnu/build/vm.scm (root-partition-initializer): Likewise.
This avoids having to traverse and re-read the files that we have just
restored, thereby reducing I/O.
* guix/serialization.scm (dump-file): New procedure.
(restore-file): Add #:dump-file parameter and honor it.
* guix/store/deduplication.scm (tee, dump-file/deduplicate): New
procedures.
* guix/nar.scm (restore-one-item): Pass #:dump-file to 'restore-file'.
(finalize-store-file): Pass #:deduplicate? #f to 'register-items'.
* tests/nar.scm <top level>: Call 'setenv' to set "NIX_STORE".
* guix/serialization.scm (restore-file): Set the permissions and mtime
of FILE.
* guix/nar.scm (finalize-store-file): Pass #:reset-timestamps? #f to
'register-items'.
* tests/nar.scm (rm-rf): Add 'chmod' calls to ensure files are writable.
("write-file + restore-file with symlinks"): Ensure every file in OUTPUT
passes 'canonical-file?'.
* tests/guix-archive.sh: Run "chmod -R +w" before "rm -rf".
* guix/serialization.scm (fold-archive): Call PROC with a
'directory-complete tag when done with a directory.
(restore-file): Handle it.
* guix/scripts/archive.scm (list-contents): Likewise.
* guix/scripts/challenge.scm (archive-contents): Likewise.
* tests/nar.scm ("write-file-tree + fold-archive"): Adjust accordingly.
This reverts commit 03fb57ff77, which
breaks most system tests. Specifically, grub.cfg.drv fails to build:
ERROR: In procedure canonicalize-path:
In procedure canonicalize-path: No such file or directory
* gnu/packages/linux.scm (iproute)[arguments]: Set CC and HOSTCC in
make-flags. Add custom phase to replace the value for PKG_CONFIG in
hand-written configure script.
* gnu/packages/crates-io.scm (rust-ndarray-0.12): New variable.
* gnu/packages/patches/rust-ndarray-remove-blas-src-dep.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
