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Author SHA1 Message Date
Bruno Victal
b92880d011
services: ntp-service-type: Remove deprecated server as strings support. 
* gnu/services/networking.scm (<ntp-configuration>)[servers]: Rename accessor to ntp-configuration-servers.
(ntp-configuration-servers): Remove helper procedure.
(ntp-shepherd-service): Remove helper procedure usage.
* tests/networking.scm: Remove obsolete test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:56:07 +02:00
Bruno Victal
0425c91a92
gnu: curl-minimal: Remove variable. 
* gnu/packages/curl.scm (curl-minimal): Remove variable.
* gnu/packages/astronomy.scm (python-fitsio, gnuastro): Use curl.
* gnu/packages/games.scm (odamex): Ditto.
* gnu/packages/sync.scm (onedrive): Ditto.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:53:57 +02:00
Bruno Victal
acdb42e5d0
gnu: Purge pre-1.3.0 deprecated packages. 
* gnu/packages/bioinformatics.scm (deeptools): Remove variable.
* gnu/packages/efi.scm (efi_analyzer): Ditto.
* gnu/packages/guile.scm (guile-2.2/bug-fix, guile-json): Ditto.
* gnu/packages/image.scm (libjpeg): Ditto.
* gnu/packages/kde.scm (kdevplatform): Ditto
* gnu/packages/linphone.scm (linphoneqt): Ditto.
* gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): Ditto.
* gnu/packages/mpi.scm (hwloc-2.0): Ditto.
* gnu/packages/music.scm (python-abjad, zlfo): Ditto.
* gnu/packages/perl.scm (perl-base, perl-parent): Ditto.
* gnu/packages/tryton.scm (python-trytond): Ditto.
* gnu/packages/video.scm (gnome-mpv): Ditto.
* tests/graph.scm: Use guile-json-1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:53:37 +02:00
Ryan Sundberg
110dc3fde9
gnu: Add bpftool. 
* gnu/packages/linux.scm (bpftool): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:38:42 +02:00
jgart
9635e45b1e
gnu: erlang: Update to 25.3. 
* gnu/packages/lisp.scm (erlang): Update to 25.3.
[native-inputs]: Update erlang-manpages to 0vnpds5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:38:42 +02:00
Florian Pelz
89c536775d
po: Do not auto-translate cross-references to other manuals. 
Reported by Gottfried at
<https://lists.gnu.org/archive/html/help-guix/2023-04/msg00000.html>.

* guix/build/po.scm (xref-regexp): Dispatch on the number of
arguments.  Ensure there is no info-manual argument or it is empty.
(translate-cross-references): Adapt to changed regexp.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:38:42 +02:00
Philippe SWARTVAGHER
09896b2913
gnu: hwloc: Update to 2.9.1. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.1.

Patch to skip tests requiring /sys on non-x86 systems should not be
necessary anymore, as https://github.com/open-mpi/hwloc/pull/570 has
been merged in this new version.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-07 17:38:42 +02:00
Jonathan Brielmaier
73ade0bbe5
news: Add entry for the linux-libre-lts 6.1 update. 
* etc/news.scm: Add entry.
 2023-04-07 17:18:18 +02:00
Jonathan Brielmaier
21564fada1
gnu: linux-libre-lts: Update to 6.1. 
6.1 is the newest long-term support version of the kernel.

* gnu/packages/linux.scm (linux-libre-lts-version, linux-libre-lts-gnu-revision,
linux-libre-lts-pristine-source, linux-libre-lts-source, linux-libre-lts): Use
linux-libre-6.1.

Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
 2023-04-07 17:08:56 +02:00
Florian Pelz
db4ddd0454
news: Add 'de' translation. 
* etc/news.scm: Add German translation of 'guix shell -CW' entry.
 2023-04-07 12:16:23 +02:00
Bruno Victal
5c893787be
home: xdg-base-directories: Set correct value for XDG_STATE_HOME. 
XDG Base Directory Specification 0.8 officially introduces the
XDG_STATE_HOME environment variable.

Fixes <https://issues.guix.gnu.org/issue/61809>.

* gnu/home/services/xdg.scm
(home-xdg-base-directories-configuration)[state-home]: Set default value
according to spec.  Update field documentation.
(home-xdg-base-directories-service-type): Update service description.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-04-07 09:07:32 +04:00
Leo Famulari
b46d9f2470
gnu: linux-libre 6.1: Update to 6.1.23. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.23.
(linux-libre-6.1-pristine-source): Update hash.
 2023-04-06 19:33:45 -04:00
Leo Famulari
b1ebc8d20f
gnu: linux-libre: Update to 6.2.10. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.10.
(linux-libre-6.2-pristine-source): Update hash.
 2023-04-06 19:33:40 -04:00
Ludovic Courtès
47fe66586e
news: Add entry for 'guix shell --container --nesting'. 
* etc/news.scm: Add entry.
 2023-04-06 18:34:31 +02:00
Ludovic Courtès
57db09aae7
environment: Add '--nesting'. 
* guix/scripts/environment.scm (show-environment-options-help)
(%options): Add '--nesting'.
(options/resolve-packages): Handle it.
(launch-environment/container): Add #:nesting? and honor it.
[nesting-mappings]: New procedure.
(guix-environment*): Add support for '--nesting'.
* guix/scripts/shell.scm (profile-cached-gc-root): Special-case
'nesting?'.
* tests/guix-environment-container.sh: Test it.
* doc/guix.texi (Invoking guix shell): Document it.
 2023-04-06 18:34:15 +02:00
Theofilos Pechlivanis
58769f9273
gnu: rizin: Update to 0.5.2. 
* gnu/packages/engineering.scm (rizin): Update to 0.5.2.
[arguments]: Remove libuv. Add lzma, libmspack and swift_demangler. Skip the analysis_var test.
[inputs]: Add libmspack.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:15 +02:00
Yovan Naumovski
730655d56a
gnu: janet: Update to 1.27.0. 
* gnu/packages/lisp.scm (janet): Update to 1.27.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:15 +02:00
Bruno Victal
11e671c816
gnu: libexif: Update to 0.6.24. [fixes CVE-2020-0198, CVE-2020-0452] 
* gnu/packages/photo.scm (libexif): Update to 0.6.24.
[source]: Switch to git checkout.
[native-inputs]: Add autoconf, automake, gettext-minimal and libtool.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Z572
452b2ec593
gnu: tcsh: Fix riscv64 cross-compilation. 
* gnu/packages/shells.scm (tcsh): fix riscv64 cross-build.
[arguments]<#:phase>: Add 'update-config-scripts' phase for riscv64.
[native-inputs]: Add CONFIG for riscv64.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Sergey Trofimov
b5a35caeeb
gnu: Add avfs. 
* gnu/packages/file-systems.scm (avfs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Arjan Adriaanse
cfbd3a3965
gnu: pounce: Update to 3.1. 
* gnu/packages/messaging.scm (pounce): Update to 3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Ricardo Wurmus
155db42699
gnu: r-ranger: Update to 0.15.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.15.1.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
f707d99bf5
gnu: r-sn: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-sn): Update to 2.1.1.
[native-inputs]: Add r-r-rsp.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
946f530dc0
gnu: r-rsqlite: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.1.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
bc9595cc36
gnu: r-rcpparmadillo: Update to 0.12.2.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.2.0.0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
241edf1daa
gnu: r-ggplot2: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.2.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
52d960874a
gnu: r-matrix: Update to 1.5-4. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
a2f4b3368d
gnu: r-lattice: Update to 0.21-8. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-8.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
d9285dc460
gnu: r-gstat: Update to 2.1-1. 
* gnu/packages/cran.scm (r-gstat): Update to 2.1-1.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
d98d68c60e
gnu: r-spacetime: Update to 1.3-0. 
* gnu/packages/cran.scm (r-spacetime): Update to 1.3-0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
e8b964b8dc
gnu: r-ggh4x: Update to 0.2.4. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.4.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
2dc53b757e
gnu: r-readtext: Update to 0.82. 
* gnu/packages/cran.scm (r-readtext): Update to 0.82.
[propagated-inputs]: Remove r-tibble; add r-pillar.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
9801058875
gnu: r-densestbayes: Update to 1.0-2.2. 
* gnu/packages/cran.scm (r-densestbayes): Update to 1.0-2.2.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
6ce72e8a85
gnu: r-tune: Update to 1.1.0. 
* gnu/packages/cran.scm (r-tune): Update to 1.1.0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
22f9445b3e
gnu: r-dials: Update to 1.2.0. 
* gnu/packages/cran.scm (r-dials): Update to 1.2.0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus
8f3c0aed69
gnu: r-projpred: Update to 2.5.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.5.0.
[propagated-inputs]: Remove r-dplyr, r-magrittr, and r-rlang.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
e7c284458e
gnu: r-loo: Update to 2.6.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.6.0.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
2e5d3192a0
gnu: r-openmx: Update to 2.21.8. 
* gnu/packages/cran.scm (r-openmx): Update to 2.21.8.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
97948967d1
gnu: r-topicmodels: Update to 0.2-14. 
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-14.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
12ac342f7d
gnu: r-emplik: Update to 1.3. 
* gnu/packages/cran.scm (r-emplik): Update to 1.3.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
2c4d5a1f15
gnu: r-rglpk: Update to 0.6-5. 
* gnu/packages/cran.scm (r-rglpk): Update to 0.6-5.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
73e2504652
gnu: r-parameters: Update to 0.20.3. 
* gnu/packages/cran.scm (r-parameters): Update to 0.20.3.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
d8a2e51df7
gnu: r-xgboost: Update to 1.7.5.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.5.1.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
41bbe582d0
gnu: r-seqinr: Update to 4.2-30. 
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-30.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
9263c6301b
gnu: r-sjplot: Update to 2.8.14. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.14.
[propagated-inputs]: Remove r-effectsize.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
06151f4908
gnu: r-ggeffects: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.1.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus
c840a7621a
gnu: r-glmmtmb: Update to 1.1.7. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.7.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus
7f6e70bb95
gnu: r-interp: Update to 1.1-4. 
* gnu/packages/cran.scm (r-interp): Update to 1.1-4.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus
88d8ab1809
gnu: r-flextable: Update to 0.9.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.9.1.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus
b93f3904f6
gnu: r-ellipse: Update to 0.4.5. 
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.5.
 2023-04-06 17:33:13 +02:00