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Author SHA1 Message Date
Ricardo Wurmus
b9b8b447ec
gnu: Add r-wiggleplotr. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): New variable.
 2019-04-03 17:42:17 +02:00
Ricardo Wurmus
8830664d61
gnu: Add r-wrench. 
* gnu/packages/bioconductor.scm (r-wrench): New variable.
 2019-04-03 17:42:17 +02:00
guy fleury iteriteka
807900804d
gnu: gnu-mate-icon-theme-faenza: Update to 1.20.0. 
* gnu/packages/mate.scm (gnu-mate-icon-theme-faenza): Update to 1.20.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:10 +02:00
guy fleury iteriteka
1e4999de71
gnu: mate-polkit: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-polkit): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:10 +02:00
guy fleury iteriteka
4e5b1221e7
gnu: mate-system-monitor: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-system-monitor): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
b3dcbc0408
gnu: pluma: Update to 1.22.0. 
* gnu/packages/mate.scm (pluma): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
56689aa5fb
gnu: engrampa: Update to 1.22.0. 
* gnu/packages/mate.scm (engrampa): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
b85d568203
gnu: eom: Update to 1.22.0. 
* gnu/packages/mate.scm (eom): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
Guy fleury
24eee2c025
gnu: mate-utils: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-utils): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:08 +02:00
guy fleury iteriteka
d3440c5313
gnu: mate-screensaver: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-screensaver): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
5150ba6f17
gnu: mate-netbook: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-netbook): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
9c688deccc
gnu: backgrounds: Update to 1.22.0. 
* gnu/packages/mate.scm (backgrounds): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
d96a83b883
gnu: mate-calc: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-calc): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
59c410dd3e
gnu: mate-user-guide: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-user-guide): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:07 +02:00
guy fleury iteriteka
0e4c492d4d
gnu: mate-control-center: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-control-center): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:05 +02:00
guy fleury iteriteka
4373626b5a
gnu: caja-extensions: Update to 1.22.0. 
* gnu/packages/mate.scm (caja-extensions): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:05 +02:00
guy fleury iteriteka
98b81c2e9e
gnu: atril: Update to 1.22.0. 
* gnu/packages/mate.scm (atril): Update to 1.22.0.
[arguments]<#:configure-flags>: Remove pre-GTK3 option.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
cca6216bfc
gnu: marco: Update to 1.22.0. 
* gnu/packages/mate.scm (marco): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
296c42b9e8
gnu: caja: Update to 1.22.0. 
* gnu/packages/mate.scm (caja): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
da5ef2a085
gnu: mate-media: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-media): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
75a9f76066
gnu: mate-applets: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-applets): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
e568d8339b
gnu: mate-panel: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-panel): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:04 +02:00
guy fleury iteriteka
45bafe5501
gnu: mate-menus: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-menus): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:03 +02:00
guy fleury iteriteka
a628389fa9
gnu: libmatekbd: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatekbd): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:03 +02:00
guy fleury iteriteka
660aa5d9f8
gnu: libmatemixer: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatemixer): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
541dfa45da
gnu: mate-settings-daemon: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-settings-daemon): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
bc96f8c4a7
gnu: mate-session-manager: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-session-manager): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
27d4e820d1
gnu: mate-terminal: Update to 1.22.0 
* gnu/packages/mate.scm (mate-terminal): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
595abe8688
gnu: libmatewether: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatewether): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
2dc975d7c0
gnu: mate-desktop: Update to 1.22.2. 
* gnu/packages/mate.scm (mate-desktop): Update to 1.22.0.
[inputs]: Add iso-codes.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
b465500686
gnu: mate-themes: Update to 3.22.19. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.19.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
80e8305146
gnu: mate-icon-theme: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.20.3.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
8b493c7cf0
gnu: mate-common: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-common): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:57 +02:00
Ricardo Wurmus
44e06f9cf3
gnu: Add brlaser. 
* gnu/packages/printers.scm (brlaser): New variable.
 2019-04-02 22:04:08 +02:00
Kei Kebreau
932d6e276b
gnu: wxmaxima: Update to 19.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
 2019-04-02 14:45:22 -04:00
Leo Famulari
a6f9f18c7e
gnu: livemedia-utils: Update to 2019.03.06. 
* gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06.
[source]: Remove snippet.
 2019-04-02 14:44:14 -04:00
Leo Famulari
295197500f
gnu: Syncthing: Update to 1.1.1. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.1.
 2019-04-02 13:07:03 -04:00
Leo Famulari
9c1b4316dc
gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes]. 
Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256
GiB of keystream is generated, or if the counter otherwise grows greater than 32
bits, the amd64 implementation will first generate incorrect output, and then
cycle back to previously generated keystream.

https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d

* gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519,
go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to
0.0.0-3.b7391e9.
(go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add
go-golang-org-x-sys-cpu.
(go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal):
Inherit from go-golang-org-x-crypto-bcrypt.
 2019-04-02 13:07:03 -04:00
Leo Famulari
4a136536e8
gnu: Add go-golang-org-x-sys-cpu. 
* gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable.
 2019-04-02 13:07:03 -04:00
Ludovic Courtès
1ccc0f807d
environment: '-C' creates namespaces where the user is not root. 
* guix/scripts/environment.scm (launch-environment/container): Add UID
and GID.  Use them in PASSWD and GROUPS.  Pass them as #:guest-uid and
 #:guest-gid to 'call-with-container'.
* tests/guix-environment-container.sh: Test the inner UID.
In '--user' test, replace hard-coded 0 with 1000.
* doc/guix.texi (Invoking guix environment): Adjust accordingly.
 2019-04-02 18:15:37 +02:00
Ludovic Courtès
af76c020bf
linux-container: Make the guest UID and GID a parameter. 
* gnu/build/linux-container.scm (initialize-user-namespace): Add
 #:guest-uid and #:guest-gid parameters and honor them.
(run-container): Likewise.
(call-with-container): Likewise.
* tests/containers.scm ("call-with-container, user namespace, guest UID/GID"):
New test.
 2019-04-02 18:15:37 +02:00
Ludovic Courtès
36d69ac993
nls: Update 'de' translation of the manual. 2019-04-02 18:15:37 +02:00
Ricardo Wurmus
cbe40b8b24
gnu: pigx-scrnaseq: Use older loompy. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
python-loompy with python-loompy-for-pigx-scrnaseq.
 2019-04-02 16:11:23 +02:00
Ricardo Wurmus
dc112a0fe2
gnu: Add python-loompy-for-pigx-scrnaseq. 
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
 2019-04-02 16:11:12 +02:00
Ricardo Wurmus
82cc117450
gnu: pigx-chipseq: Update to 0.0.40. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40.
 2019-04-02 15:53:23 +02:00
Ricardo Wurmus
b4a33870f6
gnu: python-scanpy: Add python-louvain to inputs. 
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort
inputs and add python-louvain.
[arguments]: Do not delete test that depends on louvain.
 2019-04-02 15:11:45 +02:00
Ricardo Wurmus
6ee48091a4
gnu: Add python-louvain. 
* gnu/packages/graph.scm (python-louvain): New variable.
 2019-04-02 15:11:45 +02:00
Rutger Helling
ba907ae362
gnu: faudio: Update to 19.04. 
* gnu/packages/audio.scm (faudio): Update to 19.04.
 2019-04-02 11:30:05 +02:00
Clément Lassieur
c97ad2fd8b
gnu: Add emacs-evil-numbers. 
* gnu/packages/emacs-xyz.scm (emacs-evil-numbers): New variable.
 2019-04-02 10:55:07 +02:00
Ludovic Courtès
d6fda4d3d1
gnu: gnome-shell: Add dependency on libgnomekbd. 
This fixes the "Show keyboard layout" button in the keyboard layout
switcher.

* gnu/packages/gnome.scm (gnome-shell)[arguments]: In
'record-absolute-file-names' phase, record file name of
'gkbd-keyboard-display'.
[inputs]: Add LIBGNOMEKBD.
 2019-04-01 23:21:02 +02:00