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Author SHA1 Message Date
Tobias Geerinckx-Rice
ba902a1598
gnu: eigen: Add upstream bugfix patch. 
This fixes the build of nanopolish, imp, and others.

Reported by apteryx in #guix.

* gnu/packages/algebra.scm (eigen)[source]: Add patch.
* gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-11-23 19:22:31 +01:00
Tobias Geerinckx-Rice
2d3c932073
gnu: parallel: Update to 20201122. 
* gnu/packages/parallel.scm (parallel): Update to 20201122.
 2020-11-23 19:22:30 +01:00
Niklas Eklund
ddfaae3136
gnu: Add emacs-orderless. 
* gnu/packages/emacs-xyz.scm (emacs-orderless): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-11-23 23:49:40 +05:30
David Thompson
4411029777
gnu: guile-chickadee: Update to 0.6.0. 2020-11-23 12:57:15 -05:00
David Thompson
b4b15389b7
gnu: Deprecate guile3.0-chickadee. 2020-11-23 12:56:51 -05:00
Efraim Flashner
964bc9e5fe
gnu: Add cwltool. 
* gnu/packages/bioinformatics.scm (cwltool): New variable.
 2020-11-23 15:43:38 +02:00
Efraim Flashner
a78159547f
gnu: Add python-shellescape. 
* gnu/packages/python-xyz.scm (python-shellescape): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner
5c3d81802d
gnu: Add python-arcp. 
* gnu/packages/python-xyz.scm (python-arcp): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner
7face25953
gnu: Add python-schema-salad. 
* gnu/packages/bioinformatics.scm (python-schema-salad): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner
01b6864125
gnu: Add python-cachecontrol-0.11. 
* gnu/packages/python-web.scm (python-cachecontrol-0.11): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner
5a5f16ec42
gnu: Add python-prov. 
* gnu/packages/python-xyz.scm (python-prov): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner
f00165a736
gnu: Add python-bagit. 
* gnu/packages/python-xyz.scm (python-bagit): New variable.
 2020-11-23 15:43:36 +02:00
Efraim Flashner
f8be147411
gnu: python-pydot: Update home-page URI. 
* gnu/packages/graphviz.scm (python-pydot)[home-page]: Update to new
home-page URI.
 2020-11-23 15:43:36 +02:00
Efraim Flashner
b1aac582ca
gnu: python-pydot: Run tests. 
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch.
[arguments]: Override check phase.
[native-inputs]: Add graphviz.
* gnu/packages/patches/python-pydot-regression-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2020-11-23 15:43:36 +02:00
Efraim Flashner
79f3e26184
gnu: python-pydot: Update to 1.4.1. 
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.1.
 2020-11-23 15:43:32 +02:00
Efraim Flashner
77b7d990ec
gnu: grub: Fix cross-compiling for other architectures. 
Reported by cbaines and xelxebar on IRC.

* gnu/packages/bootloaders.scm (grub)[arguments]: In custom
'set-freetype-variables phase only use the native-inputs version of
freetype.
 2020-11-23 15:43:32 +02:00
Mathieu Othacehe
d9e57db724
store: Fix ensure-path docstring. 
Suggested by Ludovic Courtès.

* guix/store.scm (ensure-path): Fix the docstring.
 2020-11-23 14:10:34 +01:00
Guillaume Le Vaillant
f14c6af5dc
gnu: Add djvusmooth. 
* gnu/packages/djvu.scm (djvusmooth): New variable.
 2020-11-23 13:28:19 +01:00
Guillaume Le Vaillant
72fbbca80d
gnu: Add python-djvulibre. 
* gnu/packages/python-xyz.scm (python-djvulibre): New variable.
 2020-11-23 13:28:18 +01:00
Pierre Neidhardt
add4749917
etc: snippets: Prefill Common Lisp package names. 
* etc/snippets/text-mode/guix-commit-message-add-cl-package: New file.
 2020-11-23 11:14:22 +01:00
Pierre Neidhardt
8307b8f184
etc: snippets: Fix package name extraction. 
* etc/snippets/text-mode/guix-commit-message-add-package: Properly extract
name when the diff contains a very short `define-public ...` above the actual
new package.  This can happen when the above package is a small inherited
definition or cl/ecl package.
 2020-11-23 11:13:58 +01:00
Tobias Geerinckx-Rice
f942c09b66
gnu: lsof: Cross-compile. 
* gnu/packages/lsof.scm (lsof)[arguments]: Use CC-FOR-TARGET.
 2020-11-23 05:44:11 +01:00
Tobias Geerinckx-Rice
2bf502138c
gnu: lsof: Make test failures fatal. 
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite
failures stop the build.
* gnu/packages/patches/lsof-fatal-test-failures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice
70303d073a
gnu: lsof: Respect #:tests?. 
* gnu/packages/lsof.scm (lsof)[arguments]: The 'check phase takes and
respects a TESTS? keyword.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice
518b21e058
gnu: lsof: Update to 4.94.0. 
* gnu/packages/lsof.scm (lsof): Update to 4.94.0.
[source]: Switch to new git upstream.
[native-inputs]: Add groff.
[arguments]: Remove custom 'unpack phase.  Add a 'build-man-page phase.
Remove the upstreamed glibc@2.28 test fix.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice
83371ccddd
gnu: hdparm: Update to 9.60. 
* gnu/packages/linux.scm (hdparm): Update to 9.60.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice
096a6938c2
gnu: ipset: Update to 7.9. 
* gnu/packages/linux.scm (ipset): Update to 7.9.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice
079bdcddd4
gnu: ipset: Use HTTPS home page. 
* gnu/packages/linux.scm (ipset)[source, home-page]: Use HTTPS.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice
c22ef8dd06
gnu: webkitgtk: Update to 2.30.3. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.30.3.
 2020-11-23 05:44:09 +01:00
Tobias Geerinckx-Rice
66ddd9664a
gnu: python-pandocfilters: Update to 1.4.3. 
* gnu/packages/textutils.scm (python-pandocfilters): Update to 1.4.3.
 2020-11-23 05:44:09 +01:00
Tobias Geerinckx-Rice
6fc2b686a0
gnu: facter: Update to 4.0.46. 
* gnu/packages/admin.scm (facter): Update to 4.0.46.
 2020-11-23 05:44:09 +01:00
Tobias Geerinckx-Rice
aeeb246a3b
gnu: duplicity: Update to 0.8.17. 
* gnu/packages/backup.scm (duplicity): Update to 0.8.17.
 2020-11-23 05:44:09 +01:00
Brett Gilio
0ada181aa1
gnu: ocaml-cairo2: Patch test phase. 
* gnu/local.mk (ocaml-cairo2-caml_ba_array_fix.patch): Add ref.
* gnu/packages/ocaml.scm (ocaml-cairo2): Utilize patch.
* gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Add file.
 2020-11-22 21:02:59 -06:00
Leo Famulari
12ed211b75
gnu: linux-libre 4.4: Update to 4.4.245. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.245.
(linux-libre-4.4-pristine-source): Update hash.
 2020-11-22 20:28:37 -05:00
Leo Famulari
0f9b2d231b
gnu: linux-libre 4.9: Update to 4.9.245. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.245.
(linux-libre-4.9-pristine-source): Update hash.
 2020-11-22 20:28:37 -05:00
Leo Famulari
bdf3589c14
gnu: linux-libre 4.14: Update to 4.14.208. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.208.
(linux-libre-4.14-pristine-source): Update hash.
 2020-11-22 20:28:36 -05:00
Leo Famulari
26d720013c
gnu: linux-libre 4.19: :Update to 4.19.159. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.159.
(linux-libre-4.19-pristine-source): Update hash.
 2020-11-22 20:28:36 -05:00
Leo Famulari
6d35c844df
gnu: linux-libre 5.4: Update to 5.4.79. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.79.
(linux-libre-5.4-pristine-source): Update hash.
 2020-11-22 20:28:36 -05:00
Leo Famulari
43e9217d32
gnu: linux-libre: Update to 5.9.10. 
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.10.
(linux-libre-5.9-pristine-source): Update hash.
 2020-11-22 20:28:28 -05:00
Brett Gilio
dd8e4411ba
gnu: Add python-transient. 
* gnu/packages/virtualization.scm (python-transient): New variable.
 2020-11-22 17:25:15 -06:00
Brett Gilio
3aa605692c
gnu: python-marshmallow: Update to 3.9.1. 
* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.9.1.
 2020-11-22 17:25:05 -06:00
Marius Bakke
79caf46a9c
gnu: exa: Add missing arguments keyword. 
This was inadvertently removed in 3dbf3a7f51.

* gnu/packages/rust-apps.scm (exa)[arguments]: Add #:phases.
 2020-11-23 00:22:49 +01:00
Efraim Flashner
1ca0c34867
build-system/cargo: Set gettext environment variable when available. 
* guix/build/cargo-build-system.scm (configure): When gettext is
available in the build environment set the GETTEXT_SYSTEM variable.
* gnu/packages/crates-io.scm (rust-gettext-rs-0.5, rust-gettext-rs-0.4,
rust-gettext-sys-0.19)[arguments]: Remove phase to help find system gettext.
 2020-11-22 19:45:43 +02:00
Efraim Flashner
8aae54f46b
gnu: rust-slog-2.5: Rename to rust-slog-2. 
* gnu/packages/crates-io.scm (rust-slog-2.5): Rename to rust-slog-2.
(rust-uuid-0.8, rust-uuid-0.7)[arguments]: Adjust accordingly.
 2020-11-22 19:45:43 +02:00
Efraim Flashner
4c93127697
gnu: rust-slog-2.4: Remove variable. 
* gnu/packages/crates-io.scm (rust-slog-2.4): Remove variable.
(rust-uuid-0.7)[arguments]: Replace rust-slog-2.4 with 2.5.
 2020-11-22 19:45:43 +02:00
Efraim Flashner
73dbcc4b5f
build-system/cargo: Set libclang environment variable when available. 
* guix/build/cargo-build-system.scm (configure): When clang is available
in the build environment set the LIBCLANG_PATH variable.
* gnu/packages/crates-graphics.scm (rust-aom-sys-0.1,
uust-dav1d-sys-0.3),
* gnu/packages/crates-io.scm (rust-bindgen-0.55, rust-bindgen-0.54,
rust-bindgen-0.53, rust-bindgen-0.52, rust-cexpr-0.4, rust-cexpr-0.3,
rust-cexpr-0.2, rust-clang-sys-1, rust-clang-sys-0.29,
rust-clang-sys-0.26, rust-clang-sys-0.22, rust-clang-sys-0.11,
rust-libpijul-0.12, rust-nettle-7, rust-nettle-sys-2,
rust-sequoia-openpgp-0.9)[arguments]: Remove phases which set an
environment variable to find clang.
[inputs]: Rename instances of libclang with clang.
 2020-11-22 19:44:53 +02:00
Efraim Flashner
3dbf3a7f51
build-system/cargo: Set openssl environment variable when available. 
* guix/build/cargo-build-system.scm (configure): When openssl is
available set the OPENSSL_DIR variable to discover its location.
* gnu/packages/crates-io.scm (rust-curl-sys-0.4, rust-libgit2-sys-0.10,
rust-libpijul-0.12, rust-libssh2-sys-0.2, rust-native-tls-0.2,
rust-openssl-sys-0.9, rust-openssl-0.7, rust-trust-dns-rustls-0.6),
* gnu/packages/rust-apps.scm (tokei, exa)[arguments]: Remove redundant
setenv for openssl.
 2020-11-22 19:44:43 +02:00
John Soo
93b14be52e
gnu: Add rust-thrussh-libsodium-0.1. 
* gnu/packages/crates-io.scm (rust-thrussh-libsodium-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-11-22 19:44:42 +02:00
John Soo
863c66e306
gnu: Add rust-shell-escape-0.1. 
* gnu/packages/crates-io.scm (rust-shell-escape-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-11-22 19:44:42 +02:00
John Soo
f1c3c08b5b
gnu: Add rust-tokio-net-0.2. 
* gnu/packages/crates-io.scm (rust-tokio-net-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-11-22 19:44:42 +02:00