Commit graph

127055 commits

Author SHA1 Message Date
Ricardo Wurmus
c9533f5df9
gnu: r-cytoml: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.14.0.

Change-Id: Ibfe47c6d75d500b0f89fd1f8abf3d670035136d3
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
0d5d1163d7
gnu: r-opencyto: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.14.0.

Change-Id: I888c78a43379b91be3ce60e761e6b1b199fcf86d
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
127590d8ad
gnu: r-flowstats: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.0.
[propagated-inputs]: Add r-clue.

Change-Id: Ib1c5eb4d5122bf25ca0e68d4404777cc8406526a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d97e582d89
gnu: r-flowworkspace: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.0.

Change-Id: I97248860f6b887d00787e22e9ac873123ba1f2c2
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
e6188fe703
gnu: r-rprotobuflib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.0.

Change-Id: I91320a80b921f1dc7b9fb858465328be105170aa
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
ca1998e47d
gnu: r-flowclust: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.40.0.

Change-Id: I50c0766d93b13489adfe800d2d06b11545bfa43b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
be37da9b54
gnu: r-flowviz: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.66.0.

Change-Id: I118ccc0471534316abff95cd1ab9eabd859f6831
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
32a16be414
gnu: r-ggcyto: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.30.0.

Change-Id: I961a281d462a3e4105b58ba692590812fe375a3f
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
451730851d
gnu: r-ncdfflow: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.48.0.

Change-Id: Ifa2ccc14f1f4b23fe582f31c219eac0bb5d0b9db
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
3ef5cbf874
gnu: r-flowmeans: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.62.0.

Change-Id: Ia9a88f9dbb6f061657444da54312c1303002c578
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
bd5d74cbdf
gnu: r-flowcore: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.0.

Change-Id: Ib1498e1d9fa450ef256487fe5137a0e2a4cf1fea
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
10d2d6225d
gnu: r-cytolib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.0.

Change-Id: Ib7dba25c2a9a7ccd400bf0f487f2cb01914411ad
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
196e98c19b
gnu: r-consensusclusterplus: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.66.0.

Change-Id: I96e93fff95f137a17c727219c53013cb02c22017
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
8c7c2359f5
gnu: r-flowai: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.32.0.

Change-Id: I7ef9deac6a209985c3fce5f6de1c36828c8dd3d9
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d1e907e41e
gnu: r-rsubread: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.0.

Change-Id: Iae1f568a867b22833df9927f856c75e6d7cd4d48
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
bea6315bb8
gnu: r-annotatr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.28.0.

Change-Id: I29292f62456e22cfdcf6d00a30c279270380b26e
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d29c9b145b
gnu: r-biosigner: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.30.0.

Change-Id: Iabd8f36615e8196e7e3df266ba8dd721bb398fba
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
c73f59a9d2
gnu: r-ropls: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.34.0.

Change-Id: Id26eafa238908b529270ffd1470102f677f10c65
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
69b935ebc1
gnu: r-multidataset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.30.0.

Change-Id: Ib3dcef1bfd56a01dee0cd6ba2a1ebefb65bb1e5a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
633560c283
gnu: r-birewire: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.34.0.

Change-Id: Ib3971ff76cc414462c14ab739855d14c3ec40df7
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
ffccc882fa
gnu: r-rqc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.36.0.

Change-Id: I7ccebf76e59f39512d24399e78a1422644cd9f6b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
a6c729f6ac
gnu: r-quasr: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.42.1.

Change-Id: Ia7d0cb971a413b41864170e464a1533ee66d4ae7
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
6a62e84948
gnu: r-rhisat2: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.18.0.

Change-Id: I79c54d0826ca2b6284b9ef8682f58042e3d81443
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
e92cb01bc3
gnu: r-sgseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.36.0.

Change-Id: I8cbf81533b9153ce237819d17241928aced30f2b
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
0f4db0e2de
gnu: r-rbowtie: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.42.0.

Change-Id: Ifc4c80de76e82cfc93bf848d6a08460ca81023db
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d2ee7821d1
gnu: r-iclusterplus: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.38.0.

Change-Id: I546a8dabf09008ba0a35c3523f8956fe59f573c8
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
77491d9dc4
gnu: r-biocfilecache: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.1.

Change-Id: I5e71ba6fe180d64679b163b2863bd96fc1ca77ae
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
6b18a2b370
gnu: r-arrmnormalization: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.42.0.

Change-Id: I54b1101547a4e360dd9e5a24425b42bad3cc77dd
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
f059ade231
gnu: r-progeny: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.24.0.

Change-Id: Ib4f1cfd6c92defe302bf07fe4b3ca4ac4df37fab
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
12a25de450
gnu: r-rbowtie2: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.8.0.

Change-Id: If97d5baf3dea63021e5f44c4bced43cd10070eda
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
cd3f0aa976
gnu: r-zfpkm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.24.0.

Change-Id: I5decb580a3fcfe73ecedcfe0acb4f8a5410f9ac3
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
9cd71a55e8
gnu: r-zinbwave: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.24.0.

Change-Id: Ibf32bcbf8919363ff413f4abf96473179a4e9d55
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
3393f89fdc
gnu: r-webbioc: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.74.0.

Change-Id: I7fdd670151d5aa49b1a99bd5d6dd2c107db79c1f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0c0d4e9d74
gnu: r-widgettools: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.80.0.

Change-Id: Iaa880fa331e4ddeec45ef36f68ab3e7e4003a046
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e83637da77
gnu: r-wiggleplotr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.26.0.

Change-Id: I971b261e23b896e51618fa4a064152891ba8d03f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
bf2e150d5c
gnu: r-wrench: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.20.0.

Change-Id: Ia2597dfb17c6a04ac19253663fa50d0155a3c8e0
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
4464ee09a8
gnu: r-wppi: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.10.0.

Change-Id: Idbb7791b3fc6bd0beaaf2544ee1765ae4980f005
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
6ea628ec1c
gnu: r-xcms: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.0.
[propagated-inputs]: Add r-msexperiment, r-progress, and r-spectra.

Change-Id: Id2f96ef91565b64456d41fc49cd157a0bcb79967
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
c76e35ac50
gnu: r-massspecwavelet: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.68.0.

Change-Id: Ie5da6f03da44a85d16ecd610f7d935b460fc05ce
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
8bb88c275f
gnu: r-roar: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.38.0.

Change-Id: Ia5adaa7e12a1dfba8840aa95ebbabf2edbcd1525
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
385193c92b
gnu: r-yarn: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.28.0.

Change-Id: I2af46c89a04e0d5fa6e82ae8c366e731b4b0aa2f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
92853c5e1a
gnu: r-quantro: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.36.0.

Change-Id: If092862e4c9b370b294809762523c93f87782758
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
a05f9cbab2
gnu: r-gcrma: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.74.0.

Change-Id: If9e27c7f36d132e71c24900cfaf052817510faea
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
8d91d64009
gnu: r-yapsa: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.28.0.

Change-Id: I5e3e4f3136a4a490cedb45b88d4879cfd210e249
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
d3550856ab
gnu: r-somaticsignatures: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.38.0.

Change-Id: If54820695dbbe0b8940f4f9b9e8e0bdd5268e0ed
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
5072f0664c
gnu: r-gtrellis: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.34.0.

Change-Id: Iab26e32c78943d713f889ccec1d1af863b9daa7e
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0ba77ac5ae
gnu: r-yamss: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.28.0.

Change-Id: I7045aee52aeabb0605249f6da52dc362c4399d04
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
ec2cd3861c
gnu: r-ebimage: Update to 4.44.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.44.0.

Change-Id: If431ef62ecf9f710394d285fb15ebb52e4cab80c
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
23c25f0423
gnu: r-aucell: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.24.0.

Change-Id: Ic0f65a553dc0ea84db788621367815882b592b27
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0eb64979aa
gnu: r-allelicimbalance: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.40.0.

Change-Id: I89a4410e142a0f00942765d98fa1a8ba27706c75
2023-11-03 22:49:22 +01:00