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127055 commits

Author SHA1 Message Date
Ricardo Wurmus
0c92b1d860
gnu: r-mast: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.28.0.

Change-Id: I53175447d543c51fba4bf34a11cbebfabf483d61
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
22b1839f1a
gnu: r-batchelor: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.0.

Change-Id: I0d8513f7d4ba32a5c642afce49724b0e88954b40
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
7af7d3d4e2
gnu: r-residualmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.12.0.

Change-Id: I011255d102774dfc396e41102f6f3fe4c90b9b2b
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1d4787f8fa
gnu: r-icobra: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.30.0.

Change-Id: I952db827b7b11d54004aadff3420a9a6ca595141
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
82d8784abe
gnu: r-ihw: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.30.0.

Change-Id: Iee49effa9aa29957af7823a93712e459ca249975
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
09d9d27c6a
gnu: r-lpsymphony: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.30.0.
[native-inputs]: Remove gfortran.

Change-Id: I404d33ce76764d76e6cc5f50ce297c2cab193d52
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
5b36a69e0f
gnu: r-karyoploter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.28.0.

Change-Id: I22ef7507f4255cee55c502117994fe96e63458e5
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9e5d778400
gnu: r-ebseq: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.0.0.
[propagated-inputs]: Add r-bh, r-rcpp, and r-rcppeigen.

Change-Id: I013ea3d56a794c0dc28e159b787b7615ff5ebadd
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
c0ea127d3f
gnu: r-dnacopy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.76.0.

Change-Id: Iba9ff03065138d1fbd295b28d91c06f5596e2048
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
819eb5ca24
gnu: r-chipexoqual: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.26.0.

Change-Id: I1246ce25e9da6aed07d52683e0f8bec677c6a41e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
02ddd7963b
gnu: r-destiny: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.16.0.

Change-Id: I3c22657e57062e00b135e94c764db7f5fbce4a41
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
dd6e945cb4
gnu: r-biocsingular: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.18.0.

Change-Id: If1228bfbe2b4a8bd84de6c645356ea35ed632262
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1672a49c4e
gnu: r-metapod: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.0.

Change-Id: I6ae84bb0ab8e68833206b214046a0144f60ae3cb
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
8aeaa84e2a
gnu: r-ggtree: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.10.0.

Change-Id: Iec5a7eb16425f5c3dbe2d457a71e70c74eb1b159
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
74253229f1
gnu: r-treesummarizedexperiment: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.10.0.

Change-Id: I287f495062c808354edef562d6844d8bb43cfaef
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
a7cd80eaf1
gnu: r-treeio: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.26.0.
[propagated-inputs]: Remove r-cli.

Change-Id: I7776d679c5af2e622451204ea586c297d4287389
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
b8daed53af
gnu: r-scaledmatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.10.0.

Change-Id: I50c8d29395648059e815c2e9ca2d3a07d17d2aba
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
69bd0f8752
gnu: r-biocneighbors: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.0.

Change-Id: I0e0dd9c4b2d1a4077176614814ef40a3f8c26e30
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
f9b3ee2f5f
gnu: r-ruvseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.36.0.

Change-Id: Iadb6c4c38b63a986bb845a482d00f8444b47b6ef
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
9ac392fc93
gnu: r-dnabarcodes: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.32.0.

Change-Id: I7b454a6429b4e7677c300607c794180364d61bb2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
642b3c3e27
gnu: r-inspect: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.31.0.

Change-Id: I05f8e69565de977045a28a6045e1dfe131ef4b09
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
81d0dedf9a
gnu: r-plyranges: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.22.0.

Change-Id: Idb42fef9913b8a1b6600a544928f39ec4b7b16fd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
7aee11f63e
gnu: r-plgem: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.74.0.

Change-Id: I11d5554e5b7833540bcbe327d73240844e816573
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
a5eefabd87
gnu: r-rots: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.30.0.

Change-Id: Ia13e99ece1a38eac6a5e370fa18da0ca93e4c962
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e0031de95b
gnu: r-glmgampoi: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.0.

Change-Id: Iaa42254b9765e0942e045f19c15b0b9c04936235
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
3e8ae47f0d
gnu: r-glimma: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.12.0.

Change-Id: I075f2b5990724ab8e2e15e88b6ed5acd75a76e80
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
1a27f050be
gnu: r-goseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.54.0.

Change-Id: I42576c75b508d8a31f26042d148065896b65a6f2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
256a5afa3f
gnu: r-ctc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.76.0.

Change-Id: I71627e23e977d69582ac593e35f7306491e04f92
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
4dd7a424bf
gnu: r-genomicinteractions: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.36.0.

Change-Id: I285ad15b9019c128b78bf0f42158f1275b0e3ee0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
3d30484b1c
gnu: r-interactionset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.30.0.

Change-Id: I03fd7532d9f32550f50a31c42f32ac2f23dcf12f
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
89937f497b
gnu: r-riboseqr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.36.0.

Change-Id: I2a1c843c0174fe058373d80e7a5fc1ecb301d900
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
a44c944971
gnu: r-riboprofiling: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.32.0.

Change-Id: I226116cdc9408f294d4baca51b341e97a6a99e84
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
c7f6a7e802
gnu: r-chipcomp: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.32.0.

Change-Id: I2229de3fc55e54de3a2157e7210ae2981fe0e5f0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
89f04f09de
gnu: r-bayseq: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.0.

Change-Id: I45768d7f3f6197834df60816697c425166ba49ac
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
11b594314a
gnu: r-qdnaseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.38.0.

Change-Id: I057ba767886780632acb14af13402ce00c1775cd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
af7177b379
gnu: r-cghbase: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.62.0.

Change-Id: Ib7b8ca1ee0c5ffe5831f92b4b26507e53da5a3a4
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
cbd1bdf433
gnu: r-marray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.80.0.

Change-Id: I90a32ab6abf3dac1335822e87aa1b0d123ee3f6b
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
56b23251f2
gnu: r-matrixgenerics: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.14.0.

Change-Id: I1160b591dd0d35a3eaeafb4601ee446aa7eb1308
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
88a4c1ef40
gnu: r-chippeakanno: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.0.

Change-Id: Ic006e5393f6b058daf5b27eb2682dc85c50557f8
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
995fd0fb69
gnu: r-pepsnmr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.20.0.

Change-Id: Ibe357d5e6d70209d0d9efb8828133d07606bf3ca
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e42bd79949
gnu: r-ggtreeextra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.12.0.

Change-Id: Ia904f7aef5cbb322bb22b440356f341dcdc7f29a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e466895bcb
gnu: r-graph: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.80.0.

Change-Id: I1a81002cebc1a57cfcba4f99ce26ead8fa2bccf5
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
413ebda52e
gnu: r-multibac: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.12.0.

Change-Id: I4c151b28ffb076846d98156fcdc15a49de34c6e3
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
e648d5ab5a
gnu: r-mbkmeans: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.18.0.

Change-Id: Ia8808189503731978f7a6bc1e38e08b2517cbb77
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
cbf6c8c353
gnu: r-mbecs: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.6.0.
[propagated-inputs]: Remove r-markdown.

Change-Id: I13cb50d3c4dba5eb9f923117b1537d77bce9cc16
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
f76b1ecf16
gnu: r-diffbind: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.12.0.

Change-Id: Ib2ca5f8fc3e6d360ac2907ee8a35b7e0ab34251a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus
41219277e1
gnu: r-greylistchip: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.34.0.

Change-Id: I9f10a21502160eceb32cbc65c3d98c462062d4a7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
41a5c3f69a
gnu: r-apeglm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.24.0.

Change-Id: Iefd5a26f065763ad3bd7d9f73f4407f65a502888
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
79416c905f
gnu: r-apcomplex: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.68.0.

Change-Id: I48bd988a0977d873c59eb80bae2d09d349579cf4
2023-11-03 22:49:18 +01:00
Ricardo Wurmus
9b9726239a
gnu: r-qvalue: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.34.0.

Change-Id: Ibc6f25bf2dcee3d98845fffd456ea923f853fd2a
2023-11-03 22:49:18 +01:00