Marius Bakke
|
bdc7be59eb
|
gnu: Add bcftools.
* gnu/packages/bioinformatics.scm (bcftools): New variable.
|
2016-09-27 20:06:00 +10:00 |
|
Marius Bakke
|
e301bfc886
|
gnu: python2-pbcore: Update to 1.2.10.
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
|
2016-09-27 20:06:00 +10:00 |
|
Marius Bakke
|
c2efe1aea8
|
gnu: Add python-pyxb.
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
|
2016-09-27 20:06:00 +10:00 |
|
Marius Bakke
|
fd49eb213f
|
gnu: python-pysam: Update to 0.9.1.4.
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
|
2016-09-27 20:05:57 +10:00 |
|
Ludovic Courtès
|
8a54c0ec69
|
guix build: Gracefully handle packages without source for '-S'.
Fixes <http://bugs.gnu.org/22836>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* guix/scripts/build.scm (options->derivations): Gracefully
handle (package-source p) = #f.
|
2016-09-27 11:44:56 +02:00 |
|
Ludovic Courtès
|
3c185b24f5
|
Add missing exports.
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.
* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
|
2016-09-27 11:22:56 +02:00 |
|
Leo Famulari
|
9ad0965228
|
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
|
2016-09-26 17:09:08 -04:00 |
|
Leo Famulari
|
8be42e5daf
|
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
|
2016-09-26 17:09:05 -04:00 |
|
Danny Milosavljevic
|
58478cc1cb
|
gnu: libftdi: Propagate the libusb input.
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.
Signed-off-by: Leo Famulari <leo@famulari.name>
|
2016-09-26 14:30:37 -04:00 |
|
Ricardo Wurmus
|
675d7ae26f
|
gnu: ncbi-vdb: Only build on i686 and x86_64.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
|
2016-09-26 14:30:59 +02:00 |
|
Ricardo Wurmus
|
bc600b80a2
|
gnu: ghc-pandoc: Update to 1.17.2.
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
|
2016-09-26 14:30:59 +02:00 |
|
Ricardo Wurmus
|
5a502d9abd
|
gnu: ghc-texmath: Update to 0.8.6.5.
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
|
2016-09-26 14:30:58 +02:00 |
|
Ricardo Wurmus
|
2e9b1276b7
|
gnu: ghc-cmark: Update to 0.5.3.1.
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
|
2016-09-26 14:30:58 +02:00 |
|
Ricardo Wurmus
|
8f1e2dca55
|
gnu: ghc-highlighting-kate: Update to 0.6.3.
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
|
2016-09-26 14:30:58 +02:00 |
|
Ricardo Wurmus
|
ae87e4fcde
|
gnu: ghc-pandoc-types: Update to 1.16.1.1.
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
|
2016-09-26 14:30:58 +02:00 |
|
Ricardo Wurmus
|
1da48e4302
|
gnu: ghc-tagsoup: Update to 0.14.
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
|
2016-09-26 14:30:58 +02:00 |
|
Ricardo Wurmus
|
1a545a1e7c
|
gnu: tbb: Fail on test errors.
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
|
2016-09-26 14:30:58 +02:00 |
|
Ricardo Wurmus
|
ba4529c4f7
|
gnu: ghc-tls: Update to 1.3.8.
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
|
2016-09-26 14:30:57 +02:00 |
|
Ricardo Wurmus
|
7f5ca399bf
|
gnu: tbb: Use modify-phases syntax.
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
|
2016-09-26 14:30:57 +02:00 |
|
Ben Woodcroft
|
af8de20386
|
gnu: vsearch: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
|
2016-09-26 20:35:32 +10:00 |
|
Ricardo Wurmus
|
204adc3017
|
gnu: azr3: Fix libsigc++ build errors.
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
|
2016-09-26 10:47:58 +02:00 |
|
Ricardo Wurmus
|
3ef08dceb3
|
gnu: qtractor: Update to 0.7.9.
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
|
2016-09-26 08:16:13 +02:00 |
|
Ricardo Wurmus
|
7ddc178093
|
profiles: Build GTK+ input module cache.
* guix/profiles.scm (gtk-im-modules): New procedure.
(%default-profile-hooks): Add it.
|
2016-09-26 07:58:17 +02:00 |
|
Ricardo Wurmus
|
2c9f4786c9
|
profiles: manifest-lookup-package: Optionally match version prefix.
* guix/profiles.scm (manifest-lookup-package): Optionally filter store
item matches by version prefix.
|
2016-09-26 07:58:17 +02:00 |
|
Ricardo Wurmus
|
f3cfe4515a
|
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
New variable.
|
2016-09-26 07:47:55 +02:00 |
|
Ricardo Wurmus
|
684f29bd2e
|
gnu: Add r-grohmm.
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
|
2016-09-26 07:47:55 +02:00 |
|
Ricardo Wurmus
|
7f903d7300
|
gnu: Add r-systempiper.
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
|
2016-09-26 07:47:55 +02:00 |
|
Ricardo Wurmus
|
cb99d457f0
|
gnu: Add r-shortread.
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
|
2016-09-26 07:47:54 +02:00 |
|
Ricardo Wurmus
|
89f40c5e4e
|
gnu: Add r-gostats.
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
|
2016-09-26 07:47:54 +02:00 |
|
Ricardo Wurmus
|
1a1931f7e0
|
gnu: Add r-category.
* gnu/packages/bioinformatics.scm (r-category): New variable.
|
2016-09-26 07:47:54 +02:00 |
|
Ricardo Wurmus
|
ad740ff818
|
gnu: Add r-gseabase.
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
|
2016-09-26 07:47:53 +02:00 |
|
Ricardo Wurmus
|
cd9e7dc7ff
|
gnu: Add r-rbgl.
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
|
2016-09-26 03:25:23 +02:00 |
|
Ricardo Wurmus
|
e816377374
|
gnu: Add r-annotationforge.
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
|
2016-09-26 03:25:17 +02:00 |
|
Ricardo Wurmus
|
9e330278ee
|
gnu: Add r-batchjobs.
* gnu/packages/statistics.scm (r-batchjobs): New variable.
|
2016-09-26 03:25:11 +02:00 |
|
Ricardo Wurmus
|
dc4fb16d25
|
gnu: Add r-fail.
* gnu/packages/statistics.scm (r-fail): New variable.
|
2016-09-26 03:25:06 +02:00 |
|
Ricardo Wurmus
|
cd26ec3bbf
|
gnu: Add r-bbmisc.
* gnu/packages/statistics.scm (r-bbmisc): New variable.
|
2016-09-26 03:25:02 +02:00 |
|
Ricardo Wurmus
|
929d4aaea1
|
gnu: Add r-checkmate.
* gnu/packages/statistics.scm (r-checkmate): New variable.
|
2016-09-26 03:24:59 +02:00 |
|
Ricardo Wurmus
|
0d90462fa3
|
gnu: Add r-backports.
* gnu/packages/statistics.scm (r-backports): New variable.
|
2016-09-26 03:24:55 +02:00 |
|
Ricardo Wurmus
|
8e1bfc7e8c
|
gnu: Add r-sendmailr.
* gnu/packages/statistics.scm (r-sendmailr): New variable.
|
2016-09-26 03:24:50 +02:00 |
|
Ricardo Wurmus
|
0c77fd50f8
|
gnu: Add r-pheatmap.
* gnu/packages/statistics.scm (r-pheatmap): New variable.
|
2016-09-26 03:24:44 +02:00 |
|
Ricardo Wurmus
|
092197a548
|
gnu: Add r-matrix.
* gnu/packages/statistics.scm (r-matrix): New variable.
|
2016-09-26 03:21:32 +02:00 |
|
Ricardo Wurmus
|
ad34f0ac96
|
gnu: Add r-deseq2.
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
|
2016-09-26 03:21:27 +02:00 |
|
Ricardo Wurmus
|
2301fd3e4d
|
gnu: Add r-genefilter.
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
|
2016-09-26 03:21:19 +02:00 |
|
Ricardo Wurmus
|
2d21d44dbd
|
gnu: Add r-hmisc.
* gnu/packages/statistics.scm (r-hmisc): New variable.
|
2016-09-26 03:21:13 +02:00 |
|
Ricardo Wurmus
|
07a664cde0
|
gnu: Add r-geneplotter.
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
|
2016-09-26 03:21:07 +02:00 |
|
Ricardo Wurmus
|
8c6de58849
|
gnu: Add r-annotate.
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
|
2016-09-26 03:20:59 +02:00 |
|
Ricardo Wurmus
|
2213730c5b
|
gnu: Add r-rpart.
* gnu/packages/statistics.scm (r-rpart): New variable.
|
2016-09-26 03:20:52 +02:00 |
|
Ricardo Wurmus
|
356c6d61a6
|
gnu: Add r-rjson.
* gnu/packages/web.scm (r-rjson): New variable.
|
2016-09-26 03:20:44 +02:00 |
|
Ricardo Wurmus
|
bbed0ab6b4
|
gnu: Add r-hwriter.
* gnu/packages/web.scm (r-hwriter): New variable.
|
2016-09-26 03:20:19 +02:00 |
|
Ricardo Wurmus
|
57a31efb4b
|
gnu: tcc: Disable build on MIPS.
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
|
2016-09-26 03:01:06 +02:00 |
|