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Author SHA1 Message Date
Ricardo Wurmus
667d90dfee gnu: python2-ipython: Override terminado in propagated inputs. 
* gnu/packages/python.scm (python2-ipython)[inputs, propagated-inputs]:
  Override inherited "python-terminado" in propagated inputs instead of
  regular inputs.
 2015-09-21 16:27:23 +02:00
Ludovic Courtès
1def6f6b2c gnu: pixman: Work around pointer arithmetic bug. 
* gnu/packages/patches/pixman-pointer-arithmetic.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[source]: Use it.
 2015-09-21 16:01:45 +02:00
Ricardo Wurmus
91781b7498 gnu: r-scales: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.3.0.
 2015-09-21 11:04:17 +02:00
Vicente Vera Parra
2a3a8ae753 gnu: Add r-dplyr. 
* gnu/packages/statistics.scm (r-dplyr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
ffd4b47851 gnu: Add r-r6. 
* gnu/packages/statistics.scm (r-r6): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
5b9789a6ff gnu: Add r-testthat. 
* gnu/packages/statistics.scm (r-testthat): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
834f7ff3c0 gnu: Add r-crayon. 
* gnu/packages/statistics.scm (r-crayon): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
b668a95cf3 gnu: Add r-memoise. 
* gnu/packages/statistics.scm (r-memoise): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
0661b4db2e gnu: Add r-pryr. 
* gnu/packages/statistics.scm (r-pryr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
1cf1cbb0ac gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
4f0e84845d gnu: Add r-microbenchmark. 
* gnu/packages/statistics.scm (r-microbenchmark): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
213656b95b gnu: Add r-knitr. 
* gnu/packages/statistics.scm (r-knitr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
ea3a80957a gnu: Add r-yaml. 
* gnu/packages/statistics.scm (r-yaml): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
3f8ac35330 gnu: Add r-markdown. 
* gnu/packages/statistics.scm (r-markdown): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
acbb40fa20 gnu: Add r-mime. 
* gnu/packages/statistics.scm (r-mime): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
ad3f005bdd gnu: Add r-highr. 
* gnu/packages/statistics.scm (r-highr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
c5bf3abe34 gnu: Add r-formatr. 
* gnu/packages/statistics.scm (r-formatr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
256ccc926c gnu: Add r-evaluate. 
* gnu/packages/statistics.scm (r-evaluate): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra
675c9f447b gnu: Add r-bh. 
* gnu/packages/statistics.scm (r-bh): New variable.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus
9cda36227b gnu: Use cran-uri in source expressions. 
* gnu/packages/statistics.scm (r-colorspace, r-dichromat, r-digest,
  r-gtable, r-labeling, r-magrittr, r-munsell, r-rcpp, r-plyr, r-proto,
  r-rcolorbrewer, r-stringi, r-stringr, r-reshape2, r-scales, r-ggplot2,
  r-assertthat, r-lazyeval, r-dbi): Use cran-uri in source expressions.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus
fed5a6898b gnu: Add shotwell. 
* gnu/packages/gnome.scm (shotwell): New variable.
 2015-09-21 07:45:20 +02:00
Ricardo Wurmus
b0f9c4b86c gnu: Add gexiv2. 
* gnu/packages/gnome.scm (gexiv2): New variable.
 2015-09-21 07:31:50 +02:00
Ricardo Wurmus
af8f9f231e gnu: Add libgee. 
* gnu/packages/gnome.scm (libgee): New variable.
 2015-09-21 07:31:42 +02:00
Eric Bavier
da494dad8e gnu: autogen: Update to 5.18.6. 
* gnu/packages/autogen.scm (autogen): Update to 5.18.6.
 2015-09-20 15:09:52 -05:00
Eric Bavier
f210647da2 gnu: gnu-pw-mgr: Update to 1.5. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.5.
 2015-09-20 15:09:51 -05:00
Ludovic Courtès
07779d0add linux-initrd: Add LUKS/dm-crypt modules to the initrd. 
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.

Partly fixes <http://bugs.gnu.org/19190>.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add dm-crypt
  and xts.
 2015-09-20 22:05:50 +02:00
Ludovic Courtès
cc0e575a94 linux-boot: Mount /dev as a devtmpfs from the start. 
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.
Reported by Duncan Keall <duncan@duncankeall.com>.

Partly fixes <http://bugs.gnu.org/19190> by populating /dev/mapper
early enough.

* gnu/build/linux-boot.scm (mount-essential-file-systems): Mount /dev as
  a devtmpfs.
  (move-essential-file-systems): Add /dev.
  (mount-root-file-system): Mount /rw-root/dev as a devtmpfs instead of
  calling 'make-essential-device-nodes'.
  (boot-system): Remove call to 'make-essential-device-nodes'.
* gnu/system/file-systems.scm (%devtmpfs-file-system): Remove.
* doc/guix.texi (File Systems): Adjust accordingly.
 2015-09-20 22:05:36 +02:00
Ricardo Wurmus
7ee5db15bf gnu: openal: Use full path to audio backend libraries. 
* gnu/packages/audio.scm (openal)[arguments]: Add build phase to patch in the
  full paths to backend audio libraries.
 2015-09-20 13:43:38 +02:00
Ricardo Wurmus
594360f508 gnu: vpnc: Use https for source URL. 
* gnu/packages/vpn.scm (vpnc)[source]: Use https protocol for source URL.
 2015-09-20 11:37:43 +02:00
Ricardo Wurmus
127b04d741 gnu: lilypond: Update to 2.19.27. 
* gnu/packages/music.scm (lilypond): Update to 2.19.27.
  [inputs]: Add font-tex-gyre.
 2015-09-20 11:37:36 +02:00
Ricardo Wurmus
7d1b5022e9 gnu: sfml: Update to 2.3.2. 
* gnu/packages/game-development.scm (sfml): Update to 2.3.2.
  [native-inputs]: Remove.
 2015-09-20 10:08:26 +02:00
Cyril Roelandt
d7af106987 gnu: Add python2-keyring. 
* gnu/packages/python.scm (python2-keyring): New variable.
 2015-09-20 04:42:15 +02:00
Cyril Roelandt
7261d9eb16 gnu: Add python2-pyflakes and fix python2-pyflakes-0.8.1. 
* gnu/packages/python.scm (python2-pyflakes): New variable.
* gnu/packages/python.scm (python2-pyflakes-0.8.1): Fix the definition.
 2015-09-20 04:41:51 +02:00
Cyril Roelandt
350ba0a32b gnu: Add python-prettytable 
* gnu/packages/python.scm (python-prettytable,
  python2-prettytable): New variables.
 2015-09-20 04:29:10 +02:00
David Thompson
f88ee3ade7 gnu: avahi: Enable libdns_sd compatibility. 
* gnu/packages/avahi.scm (avahi): Add '--enable-compat-libdns_sd' configure
  flag.
 2015-09-19 21:38:33 -04:00
Mark H Weaver
65d54af49f gnu: icu4c: Add fixes for CVE-2014-6585 and CVE-2015-1270. 
* gnu/packages/patches/icu4c-CVE-2014-6585.patch,
  gnu/packages/patches/icu4c-CVE-2015-1270.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/icu4c.scm (icu4c)[source]: Add patches.
 2015-09-19 21:35:18 -04:00
Andreas Enge
a5002ae77c gnu: Add R/qtl. 
* gnu/packages/bioinformatics.scm (r-qtl): New variable.

Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
 2015-09-20 00:32:45 +02:00
Andreas Enge
e49b339608 gnu: libmtp: Add additional MTP devices. 
* gnu/packages/patches/libmtp-devices.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/patches/libmtp-devices.patch (libmtp)[source]: Add patch.
 2015-09-19 23:38:51 +02:00
Mark H Weaver
257abebba3 gnu: gtk+: Adapt pre-configure phase to version 3.16.6. 
This is a followup to commit a35b8fc6c4.

* gnu/packages/gtk.scm (gtk+)[arguments]: In 'pre-configure' phase, remove
  substitutions of 'gtk-update-icon-cache' in demo Makefiles.
 2015-09-19 17:32:10 -04:00
Pjotr Prins
edb15985f1 gnu: Add bioruby. 
* gnu/packages/bioinformatics.scm (bioruby): New variable.
 2015-09-19 12:41:52 -04:00
Pjotr Prins
28c5d42d35 gnu: Add ruby-libxml. 
* gnu/packages/ruby.scm (ruby-libxml): New variable.
 2015-09-19 12:31:42 -04:00
Ricardo Wurmus
7ac4610f7e gnu: Add ruby-shindo. 
* gnu/packages/ruby.scm (ruby-shindo): New variable.
 2015-09-19 08:51:27 -04:00
Ricardo Wurmus
8528365b0e gnu: Add ruby-formatador. 
* gnu/packages/ruby.scm (ruby-formatador): New variable.
 2015-09-19 08:51:13 -04:00
Ricardo Wurmus
d152162fc1 gnu: Add ruby-notiffany. 
* gnu/packages/ruby.scm (ruby-notiffany): New variable.
 2015-09-19 08:49:11 -04:00
Ricardo Wurmus
c5d14d4228 gnu: Add ruby-shellany. 
* gnu/packages/ruby.scm (ruby-shellany): New variable.
 2015-09-19 08:45:12 -04:00
Ricardo Wurmus
70b4cf3818 gnu: Add ruby-nenv. 
* gnu/packages/ruby.scm (ruby-nenv): New variable.
 2015-09-19 08:44:13 -04:00
Ricardo Wurmus
ec79018e68 gnu: Add ruby-lumberjack. 
* gnu/packages/ruby.scm (ruby-lumberjack): New variable.
 2015-09-19 08:43:23 -04:00
Pjotr Prins
6aaa815e9f gnu: Add ruby-docile. 
* gnu/packages/ruby.scm (ruby-docile): New variable.
 2015-09-19 08:34:14 -04:00
Ludovic Courtès
8874f7668a gnu: ifstatus: Fix license. 
* gnu/packages/networking.scm (ifstatus)[license]: Set to GPL2+.
 2015-09-18 21:57:53 +02:00
Stefan Reichoer
24a848c8e3 gnu: Add ifstatus. 
* gnu/packages/networking.scm (ifstatus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-09-18 21:54:03 +02:00
Federico Beffa
c093f9f63a gnu: Add scmutils. 
* gnu/packages/scheme.scm (scmutils): New variable.
 2015-09-18 14:55:53 +02:00
Pjotr Prins
212d563d26 gnu: Add ruby-bio-logger. 
* gnu/packages/ruby.scm (ruby-bio-logger): New variable.
 2015-09-17 17:41:22 -04:00
Christopher Allan Webber
be3feafedf gnu: guile: Add guile-next 
* gnu/packages/guile.scm (guile-next): New variable.
* gnu/packages/guile.scm (guile-for-guile-emacs):
  Adjust to inherit from guile-next rather than guile-2.0

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-09-17 14:38:19 +02:00
宋文武
0a129f391b gnu: harfbuzz: Comment on the "bin" output. 
* gnu/packages/gtk.scm (harfbuzz): Comment on why "bin" output.
 2015-09-17 19:57:36 +08:00
Ludovic Courtès
2d1db448bd gnu: Add emacs-typo. 
* gnu/packages/emacs.scm (typo): New variable.
 2015-09-17 11:21:42 +02:00
Ludovic Courtès
d001bb5ab5 gnu: Add emacs-butler. 
* gnu/packages/emacs.scm (butler): New variable.
 2015-09-17 11:21:42 +02:00
Ludovic Courtès
3ffe36f534 gnu: Add emacs-deferred. 
* gnu/packages/emacs.scm (emacs-deferred): New variable.
 2015-09-17 11:21:42 +02:00
Pjotr Prins
cd89fecbe7 gnu: Add ruby-cucumber-core. 
* gnu/packages/ruby.scm (ruby-cucumber-core): New variable.
 2015-09-16 20:56:16 -04:00
Ben Woodcroft
41ddebdd2a gnu: Add mafft. 
* gnu/packages/bioinformatics.scm (mafft): New variable.
 2015-09-16 23:06:14 +02:00
Efraim Flashner
e864722731 gnu: Add keepassx. 
* gnu/packages/password-utils.scm (keepassx): New variable.
 2015-09-16 23:00:01 +02:00
Cyril Roelandt
2c9d96767a gnu: Add python-requests-mock. 
* gnu/packages/openstack.scm (python-requests-mock,
  python2-requests-mock): New variables.
 2015-09-16 22:53:36 +02:00
Cyril Roelandt
de34aface7 gnu: Add python-webob. 
* gnu/packages/python.scm (python-webob, python2-webob): New variables.
 2015-09-16 22:53:36 +02:00
Cyril Roelandt
c7c7a93621 gnu: Add python-oslo.context. 
* gnu/packages/openstack.scm (python-oslo.context,
  python2-oslo.context): New variables.
 2015-09-16 22:53:36 +02:00
Cyril Roelandt
5702efe3e9 gnu: Add python-oslo.serialization. 
* gnu/packages/openstack.scm (python-oslo.serialization,
  python2-oslo.serialization): New variables.
 2015-09-16 22:53:36 +02:00
Ricardo Wurmus
979f9e8aed gnu: sfarklib: Update to 2.24. 
* gnu/packages/compression.scm (sfarklib): Update to 2.24.
 2015-09-16 22:42:45 +02:00
Ludovic Courtès
2ed74cea5c gnu: imagemagick: Update to 6.9.2-1. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.2-1.
  [source]: Add imagemagick-test-segv.patch.
  [inputs]: Replace LIBJPEG-8 with LIBJPEG.
 2015-09-16 17:59:16 +02:00
Pjotr Prins
f9ae2c068d gnu: Add ruby-log4r. 
* gnu/packages/ruby.scm (ruby-log4r): New variable.
 2015-09-16 08:41:46 -04:00
Vicente Vera Parra
8ea6b30fea gnu: Add r-dbi. 
* gnu/packages/statistics.scm (r-dbi): New variable.
 2015-09-16 12:01:12 +02:00
Mark H Weaver
1d6c8db57c gnu: valgrind: Adapt to glibc-2.22 and linux-libre-4.x. 
* gnu/packages/patches/valgrind-glibc-2.21.patch: Rename to ...
  gnu/packages/patches/valgrind-glibc-2.22.patch: ... this, and add a case for
  glibc-2.22.
* gnu/packages/patches/valgrind-linux-libre-4.x.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new file, and rename the other one.
* gnu/packages/valgrind.scm (valgrind)[source]: Add new patch.
 2015-09-15 18:21:16 -04:00
Andreas Enge
b76b1dcb96 gnu: cups-filters: Add glib:bin as a native input. 
* gnu/packages/cups.scm (cups-filters)[native-inputs]: Add the bin output
  of the glib package.
 2015-09-15 23:55:09 +02:00
Ludovic Courtès
f4e92db3cb nls: Add "TRANSLATORS:" comment about Texinfo. 
* gnu/packages/abiword.scm: Add comment above 'description'.
 2015-09-15 22:48:53 +02:00
Vicente Vera Parra
6af4813430 gnu: Add r-lazyeval. 
* gnu/packages/statistics.scm (r-lazyeval): New variable.
 2015-09-15 22:33:57 +02:00
Mark H Weaver
d02f38f3f8 gnu: gcc-toolchain: Don't try to delete OUT/bin/sh, which no longer exists. 
* gnu/packages/commencement.scm (gcc-toolchain)[arguments]: Remove code that
  deletes OUT/bin/sh and OUT/bin/bash, since those files no longer exist in
  our libc package.
 2015-09-15 16:12:35 -04:00
Vicente Vera Parra
ed6094fc77 gnu: Add r-assertthat. 
* gnu/packages/statistics.scm (r-assertthat): New variable.
 2015-09-15 21:09:02 +02:00
pjotr.public12@thebird.nl
62e4cc5aa1 gnu: Add ruby-gherkin3. 
* gnu/packages/ruby.scm (ruby-gherkin3): New variable.
 2015-09-15 14:37:09 -04:00
宋文武
c136546aaa gnu: librsvg: Update to 2.40.10. 
* gnu/packages/gnome.scm (librsvg): Update to 2.40.10.
 2015-09-15 20:32:23 +08:00
宋文武
4ea50f2bc8 gnu: libgsf: Update to 1.14.34. 
* gnu/packages/gnome.scm (libgsf): Update to 1.14.34.
 2015-09-15 20:31:47 +08:00
宋文武
eb6afbcde7 gnu: harfbuzz: Add "bin" output. 
* gnu/packages/gtk.scm (harfbuzz)[outputs]: New field.
  [arguments]<#:configure-flags>: Pass '--bindir'.
 2015-09-15 20:19:39 +08:00
宋文武
fd9b3b43ab gnu: harfbuzz: Propagate graphite2 and icu4c. 
* gnu/packages/gtk.scm (harfbuzz): Move graphite2 and icu4c to 'propagated-inputs'.
  [source]: Improve formatting.
 2015-09-15 20:11:52 +08:00
Mark H Weaver
40f4817846 gnu: util-linux: Adapt util-linux-tests.patch to version 2.27. 
This is a followup to commit 57a66c2729.

* gnu/packages/patches/util-linux-tests.patch: Adapt to util-linux 2.27.
 2015-09-15 01:41:57 -04:00
Mark H Weaver
57a66c2729 gnu: util-linux: Update to 2.27. 
* gnu/packages/linux.scm (util-linux): Update to 2.27.
 2015-09-15 00:17:50 -04:00
Mark H Weaver
8338c24163 gnu: util-linux: Minor fixes. 
* gnu/packages/linux.scm (util-linux)[source]: Return #t from the snippet.
  [arguments]: Remove "--enable-ddate" from configure flags, as it is no
  longer recognized (ddate is no longer included in util-linux).
 2015-09-15 00:17:49 -04:00
Mathieu Lirzin
17d8e33f31 doc: Use the recommended Scheme format. 
Apply the recommended formatting rules from '.dir-locals.el' to the
examples in the manual in order to fulfill it's purpose of being a
reference.

* doc/package-hello.scm: Indent it.
* doc/guix.texi (Defining Packages, Version Numbers): Likewise.
* gnu/packages/base.scm (hello): Be consistent with the manual.
 2015-09-14 23:10:58 +02:00
Pjotr Prins
9c38b54027 gnu: Add bio-locus. 
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
 2015-09-14 12:06:04 -04:00
David Thompson
801a0a2219 Revert "gnu: Add bio-locus." 
This reverts commit b429c4fbb0.
 2015-09-14 12:05:15 -04:00
Pjotr Prins
b429c4fbb0 gnu: Add bio-locus. 
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
 2015-09-14 11:36:30 -04:00
宋文武
1b7b7f27bd gnu: cmake: Update to 3.3.1. 
* gnu/packages/cmake.scm (cmake): Update to 3.3.1.  Enable parallel
  tests.
 2015-09-14 21:05:38 +08:00
David Thompson
239db054a7 gnu: system: Add Linux container module. 
* gnu/system/linux-container.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/system.scm: Export 'operating-system-etc-directory',
  'operating-system-boot-script', 'operating-system-locale-directory', and
  'file-union'.
  (operating-system-boot-script): Add #:container? keyword argument.
  (operating-system-activation-script): Add #:container?  keyword argument.
  Don't call 'activate-firmware' or 'activate-ptrace-attach' when activating a
  container.
 2015-09-14 08:30:46 -04:00
宋文武
f56e8f5730 gnu: pciutils: Update to 3.3.1. 
* gnu/packages/pciutils.scm (pciutils): Update to 3.3.1.
 2015-09-14 20:01:13 +08:00
宋文武
62bffcaa3b Revert "gnu: libtasn1: Update to 4.6." 
Causes a test of GnuTLS to fail:
<http://lists.gnu.org/archive/html/help-libtasn1/2015-09/msg00003.html>.

This reverts commit 866ee34f7e.
 2015-09-14 19:21:23 +08:00
Cyril Roelandt
27cc9f2544 gnu: Add python-oslo.utils. 
* gnu/packages/openstack.scm (python-oslo.utils, python2-oslo.utils): New variables.
 2015-09-14 00:14:56 +02:00
Cyril Roelandt
2713527e06 gnu: Add python-debtcollector. 
* gnu/packages/openstack.scm (python-debtcollector,
  python2-debtcollector): New variables.
 2015-09-14 00:14:56 +02:00
Cyril Roelandt
5e412b6383 gnu: Add python-monotonic. 
* gnu/packages/python.scm (python-monotonic, python2-monotonic): New variables.
 2015-09-14 00:14:56 +02:00
Cyril Roelandt
b85c85becd gnu: Add python-iso8601. 
* gnu/packages/python.scm (python-iso8601, python2-iso8601): New variables.
 2015-09-14 00:14:55 +02:00
Cyril Roelandt
8c692a5258 gnu: Add python-wrapt 
* gnu/packages/python.scm (python-wrapt, python2-wrapt): New variables.
 2015-09-14 00:14:53 +02:00
Cyril Roelandt
ed56af06bc gnu: Add python-oslo.config. 
* gnu/packages/openstack.scm (python-oslo.config, python2-oslo.config): New variables.
 2015-09-13 23:31:57 +02:00
Cyril Roelandt
673d1a9deb gnu: Add python-stevedore. 
* gnu/packages/openstack.scm (python-stevedore, python2-stevedore): New variables.
 2015-09-13 23:28:50 +02:00
Cyril Roelandt
6e5e39f406 gnu: Add python-netaddr. 
* gnu/packages/python.scm (python-netaddr, python2-netaddr): New variables.
 2015-09-13 23:21:54 +02:00
Ludovic Courtès
fb76332f80 gnu: libidn: Update to 1.32. 
* gnu/packages/libidn.scm (libidn): Update to 1.32.
 2015-09-13 21:36:13 +02:00
Ludovic Courtès
75710da667 Merge branch 'master' into core-updates 2015-09-13 21:28:01 +02:00