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Author SHA1 Message Date
Ricardo Wurmus
c4d627396f
gnu: r-tarchetypes: Update to 0.7.8. 
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.8.
 2023-09-14 00:04:08 +02:00
Ricardo Wurmus
52c69229f8
gnu: r-phyclust: Update to 0.1-34. 
* gnu/packages/cran.scm (r-phyclust): Update to 0.1-34.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
00a4e351eb
gnu: r-flextable: Update to 0.9.3. 
* gnu/packages/cran.scm (r-flextable): Update to 0.9.3.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
e371d89fa4
gnu: r-insight: Update to 0.19.4. 
* gnu/packages/cran.scm (r-insight): Update to 0.19.4.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
28d1e102b6
gnu: r-reticulate: Update to 1.32.0. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.32.0.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
4d0b8b39a7
gnu: r-rio: Update to 0.5.30. 
* gnu/packages/cran.scm (r-rio): Update to 0.5.30.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
a8c112e212
gnu: r-statsexpressions: Update to 1.5.2. 
* gnu/packages/cran.scm (r-statsexpressions): Update to 1.5.2.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
ad05f41553
gnu: r-prodlim: Update to 2023.08.28. 
* gnu/packages/cran.scm (r-prodlim): Update to 2023.08.28.
 2023-09-14 00:04:07 +02:00
Ricardo Wurmus
96841f9b22
gnu: r-lpsolve: Update to 5.6.19. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.19.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
d530d51c39
gnu: r-lambertw: Update to 0.6.8. 
* gnu/packages/cran.scm (r-lambertw): Update to 0.6.8.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
273b193782
gnu: r-ctrdata: Update to 1.15.1. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.15.1.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
d0928fe95c
gnu: r-rcppnumerical: Update to 0.6-0. 
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.6-0.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
f5bc3727de
gnu: r-askpass: Update to 1.2.0. 
* gnu/packages/cran.scm (r-askpass): Update to 1.2.0.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
1af29b5f27
gnu: r-mboost: Update to 2.9-8. 
* gnu/packages/cran.scm (r-mboost): Update to 2.9-8.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
4e2c4c5d4d
gnu: r-climaemet: Update to 1.2.0. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.2.0.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
34d08dc157
gnu: r-ggfittext: Update to 0.10.1. 
* gnu/packages/cran.scm (r-ggfittext): Update to 0.10.1.
 2023-09-14 00:04:06 +02:00
Ricardo Wurmus
bf9cd9521a
gnu: r-htscluster: Update to 2.0.11. 
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.11.
 2023-09-14 00:04:05 +02:00
Ricardo Wurmus
8f59ac151f
gnu: r-abn: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.0.
[propagated-inputs]: Add r-mclogit and r-stringi.
 2023-09-13 23:14:38 +02:00
Ricardo Wurmus
4676f07f6d
gnu: r-glmnetutils: Update to 1.1.9. 
* gnu/packages/cran.scm (r-glmnetutils): Update to 1.1.9.
 2023-09-13 23:02:37 +02:00
Ricardo Wurmus
b3b369f990
gnu: r-hmisc: Update to 5.1-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-1.
 2023-09-13 22:58:18 +02:00
Ricardo Wurmus
ab1f8495f9
gnu: r-rstan: Update to 2.26.23. 
* gnu/packages/cran.scm (r-rstan): Update to 2.26.23.
[native-inputs]: Remove pandoc.
[propagated-inputs]: Add r-quickjsr.
 2023-09-13 22:57:03 +02:00
Ricardo Wurmus
455dadc41a
gnu: r-iheatmapr: Update to 0.7.0. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.0.
[source]: Delete minified plotly JavaScript.
[native-inputs]: Add esbuild and js-plotly.
[arguments]: Add phase to minify plotly.js.
 2023-09-13 22:51:14 +02:00
Ricardo Wurmus
f2d690c6c5
gnu: r-leaflet: Update to 2.2.0. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.2.0.
[source]: Do not delete jquery.min.js, because it is no longer included.
[arguments]: Adjust minification accordingly.
[native-inputs]: Remove js-jquery.
[propagated-inputs]: Remove r-base64enc and r-markdown; add r-jquerylib and
r-xfun.
 2023-09-13 22:41:25 +02:00
Ricardo Wurmus
9049506d8b
gnu: python-hicmatrix: Remove custom 'check phase. 
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Remove custom
'check phase.
 2023-09-13 22:19:23 +02:00
Ricardo Wurmus
bf98283741
gnu: r-radiant-data: Update to 1.6.1. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.1.
[propagated-inputs]: Add r-arrow.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
080d088016
gnu: r-arrow: Update to 13.0.0. 
* gnu/packages/cran.scm (r-arrow): Update to 13.0.0.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
6739c534f8
gnu: apache-arrow: Update to 13.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 13.0.0.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
aaaaa2ea07
gnu: r-minqa: Update to 1.2.6. 
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.6.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2023-09-13 22:18:27 +02:00
Ricardo Wurmus
4e8ec5a16b
gnu: r-dt: Update to 0.29. 
* gnu/packages/statistics.scm (r-dt): Update to 0.29.
[propagated-inputs]: Add r-httpuv.
 2023-09-13 22:18:27 +02:00
Mădălin Ionel Patrașcu
2c1d86e2e0
gnu: python-hicmatrix: Remove syntax error in setup.py. 
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Add phase
remove-invalid-syntax.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-09-13 22:17:21 +02:00
Ricardo Wurmus
dc172966ba
gnu: Add r-quickjsr. 
* gnu/packages/cran.scm (r-quickjsr): New variable.
 2023-09-13 22:17:21 +02:00
Ricardo Wurmus
b6441f7bd0
upstream: Compare symbols to symbols. 
The UNCHANGED? comparison would always yield #FALSE, because we have been
comparing lists of strings with lists of symbols.

* guix/upstream.scm (update-package-inputs): Convert string labels to symbols
before comparison.
 2023-09-13 22:17:21 +02:00
Andy Tai
67268d9a81
gnu: octave-cli: Update to 8.3.0 
* gnu/packages/maths.scm (octave-cli): Update to 8.3.0

Signed-off-by: Eric Bavier <bavier@posteo.net>
 2023-09-13 09:22:28 -05:00
Andre A. Gomes
4f933f977d
gnu: nyxt: Update to 3.7.0. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.7.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-09-13 13:38:18 +02:00
Andre A. Gomes
828b08d585
gnu: cl-nasdf: Update to 0.1.8. 
* gnu/packages/lisp-xyz.scm (sbcl-nasdf): Update to 0.1.8.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-09-13 13:37:15 +02:00
Artyom Bologov
3007f77596
gnu: cl-njson: Update to 1.2.0. 
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.2.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-09-13 13:32:42 +02:00
Navid Afkhami
cda20190bc
gnu: Add r-interactivedisplay. 
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-09-13 12:10:06 +02:00
Andreas Enge
6a01c1142b
gnu: hdf4, hdf4-alt: Update to 4.2.16-2. 
* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches
that do not apply any more.
[arguments]: Drop configure flag related to libtirpc. Add configure flag
to build xdr library and drop unneeded substitutions.
* gnu/packages/patches/hdf4-architectures.patch,
gnu/packages/patches/hdf4-tirpc.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Unregister patches.
 2023-09-13 11:18:42 +02:00
Munyoki Kilyungi
c30c9df5e9
gnu: yoyo-migrations: Update to 8.2.0. 
* gnu/packages/databases.scm (yoyo-migrations): Update to 8.2.0.
[propagated-inputs]: Add python-importlib-metadata.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:21 +01:00
Zheng Junjie
79988ab742
gnu: libvterm: Update arguments style. 
* gnu/packages/terminals.scm (libvterm)[arguments]: Update arguments style.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Zheng Junjie
8d5304b143
gnu: libvterm: Update to 0.3.3. 
* gnu/packages/terminals.scm (libvterm): Update to 0.3.3.
[source]: Use launchpad.net url.
[arguments]: Use CC-FOR-TARGET.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Hendursaga
901eaca92b
gnu: tennix: Update to 1.3.4. 
* gnu/packages/games.scm (tennix): Update to 1.3.4.
[arguments]<#:phases>: Update style and remove fix-include phase.
[inputs]: Remove labels, update to SDL2, add SDL2_gfx dependency.
[license]: Remove LGPL license, as SDL_rotozoom is no longer included.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Sharlatan Hellseher
7f150a1895
gnu: python-qtsass: Update to 0.4.0. 
This also fixes test failures preventing the package from building.

* gnu/packages/python-xyz.scm (python-qtsass): Update to 0.4.0, fix build.
[native-inputs]: Add python-flaky.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Sharlatan Hellseher
de2ee9cae6
gnu: python-libsass: Update to 0.22.0. 
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.22.0.
[phases]: Add new phase 'silent-failing-tests and disable 2 failing
tests to complete build.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:20 +01:00
Valter Nazianzeno
10bc07671e
gnu: emilua: Update to 0.4.3. 
* gnu/packages/lua.scm (emilua): Update to 0.4.3.
[source]: Remove recursive? and replace with inputs.
[arguments]: Update style, add patch phase, enable tests and enable some more
features.
[native-inputs]: Add gperf, gawk and xdd.
[inputs]: Add emilua-http and trial-protocol as origin is no longer recursive,
also add serd, sord, libcap and liburing.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-13 09:22:14 +01:00
Ricardo Wurmus
07d43c66d5
gnu: Add swineherd. 
* gnu/packages/admin.scm (swineherd): New variable.
 2023-09-12 23:30:58 +02:00
Maxim Cournoyer
4cb2e08b8e
gnu: python-django-4.0: Use $TZDIR. 
* gnu/packages/django.scm (python-django-4.0) [native-search-paths]: Use
$TZDIR.
 2023-09-12 10:05:00 -04:00
Maxim Cournoyer
f0e05411bd
search-paths: Add $TZDIR. 
* guix/search-paths.scm ($TZDIR): New search path.
 2023-09-12 10:03:44 -04:00
Maxim Cournoyer
076b3384df
gnu: qemu: Reinstate the iothreads-commit-active test. 
* gnu/packages/virtualization.scm (qemu) [arguments]: Add set-SOCK_DIR phase.
(qemu-minimal) [arguments]: Delete the disable-extra-tests phase.
 2023-09-12 09:59:47 -04:00
Ricardo Wurmus
9996896dc2
gnu: Add python-peaks2utr. 
* gnu/packages/bioinformatics.scm (python-peaks2utr): New variable.
 2023-09-12 12:28:32 +02:00