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Author SHA1 Message Date
Ricardo Wurmus
c544f5ce82
gnu: r-biomartr: Update to 1.0.7. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.7.

Change-Id: I7f02a92d86506b4fbca950a13ed106753e1b7f76
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
633db77deb
gnu: r-arrow: Update to 14.0.0.2. 
* gnu/packages/cran.scm (r-arrow): Update to 14.0.0.2.

Change-Id: Icff453a1aa0ad59d7e707a0fdfc23e3d4dd1f7c0
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
517fedb360
gnu: apache-arrow: Update to 14.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 14.0.0.

Change-Id: I5689b37fbfee2cb049cbaf351caed2e3cd07094c
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
8f72116222
gnu: r-interactivedisplay: Add missing input. 
* gnu/packages/bioconductor.scm (r-interactivedisplay)[propagated-inputs]: Add
r-biocmanager.

Change-Id: I7e29c28202496ba58ec35adf03b77ac84691e492
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
837c91501e
gnu: r-dt: Update to 0.31. 
* gnu/packages/statistics.scm (r-dt): Update to 0.31.
[source]: Simplify by using git repositories for extensions instead of
fetching every file from the datatables CDN.
[native-inputs]: Update to datatables-plugins 1.13.6.

Change-Id: Ibebd2ae1f3b4d51739b756ad808bebf2663e1009
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
2efa72be46
gnu: r-interactivedisplay: Add missing JavaScript sources. 
* gnu/packages/bioconductor.scm (r-interactivedisplay)[source]: Update list of
minified JavaScript files to delete.
[arguments]: Use minify-build-system to process JavaScript files.
[native-inputs]: Add js-d3-v2; relabel js-datatables as js-datatables-1.10;
add js-datatables-1.9.

Change-Id: If8b6d9378680e9f69d71be56ce28add70b1a4564
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
8881398803
gnu: r-bookdown: Update to 0.37. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.37.
[arguments]: Use minify-build-system to process JavaScript.

Change-Id: I53ff5ef1527976e40e7caf8b34f77af7eb3e833f
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
b55d0a4abf
gnu: r-crosstalk: Update to 1.2.1. 
* gnu/packages/cran.scm (r-crosstalk): Update to 1.2.1.
[source]: Add snippet to delete bundled minified JavaScript.
[arguments]: Use minify-build-system to minify JavaScript files from source;
add phase 'replace-bundled-minified-JavaScript.
[native-inputs]: Add esbuild and js-selectize.

Change-Id: I2a4a773d5f40a8f27e594e2f1b627624cab8755e
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
5374d0d89b
gnu: Add js-datatables-1.9. 
* gnu/packages/javascript.scm (js-datatables-1.9): New variable.

Change-Id: I9b022e12119247c8385ebbcec07f54c4106155df
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
b3fd9eeb81
gnu: r-bslib: Update to 0.6.1. 
* gnu/packages/cran.scm (r-bslib): Update to 0.6.1.
[source]: Update list of minified JavaScript to delete.
[arguments]: Use minify-build-system; update process-javascript phase.
[propagated-inputs]: Add r-lifecycle.
[native-inputs]: Remove typescript-components; update js-bootstrap5-bundle.

Change-Id: I0aeae3f11a35211e6b429461042dbce2eca85313
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
39b8404168
gnu: r-pkgbuild: Update to 1.4.3. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.3.
[propagated-inputs]: Remove r-crayon, r-prettyunits, and r-rprojroot.

Change-Id: I0b83188e69aae19ddc62d71da18358777ed9c454
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
1da863cc3b
gnu: r-wgcna: Update to 1.72-5. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.72-5.

Change-Id: Ib9d3b0e6ba191839e4b22cb0b8f63e6b0e9d2baa
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
5ad3b5d786
gnu: r-spacetime: Update to 1.3-1. 
* gnu/packages/cran.scm (r-spacetime): Update to 1.3-1.

Change-Id: I1fe54f97452c0dd738c6cfced56c406498de73c4
 2023-12-15 16:13:07 +01:00
Ricardo Wurmus
51702785da
gnu: r-openmx: Update to 2.21.11. 
* gnu/packages/cran.scm (r-openmx): Update to 2.21.11.

Change-Id: I1349e0965508f42d183d2e705c356fdd3ac9faf0
 2023-12-15 16:13:06 +01:00
Ricardo Wurmus
4d272fa3a9
gnu: r-spacyr: Update to 1.3.0. 
* gnu/packages/cran.scm (r-spacyr): Update to 1.3.0.
[native-inputs]: Add r-r-rsp.

Change-Id: I999db8ad92b2d0799ffa4350847980db30c75409
 2023-12-15 16:13:06 +01:00
Ricardo Wurmus
af28dc137f
gnu: r-scales: Update to 1.3.0. 
* gnu/packages/cran.scm (r-scales): Update to 1.3.0.
[propagated-inputs]: Add r-cli and r-glue.

Change-Id: I37c4a09d6910f9d8885d253547808d3dc2761748
 2023-12-15 16:13:06 +01:00
Ricardo Wurmus
929079dfbc
gnu: r-pbdmpi: Update to 0.5-1. 
* gnu/packages/cran.scm (r-pbdmpi): Update to 0.5-1.

Change-Id: Iede248c40a0a57bc5a23015745f426cd4485b38c
 2023-12-15 16:13:06 +01:00
Ricardo Wurmus
d6239e12d4
gnu: r-rjava: Update to 1.0-10. 
* gnu/packages/cran.scm (r-rjava): Update to 1.0-10.
[source]: Delete bundled minified JavaScript.
[arguments]: Use minify-build-system in new phase
'replace-bundled-minified-JavaScript.
[native-inputs]: Add esbuild.

Change-Id: I6ca7724ea61f53995067cca8d6835fe061621567
 2023-12-15 16:13:06 +01:00
Ricardo Wurmus
259930c8eb
gnu: Add alsa-scarlett-gui. 
* gnu/packages/music.scm (alsa-scarlett-gui): New variable.

Change-Id: Ia92a0be7e0f08cf42bc263f2c321b4617fa6935b
 2023-12-15 15:12:06 +01:00
Ricardo Wurmus
6b5c0e77a9
gnu: tascam-gtk: Update to 0.4-0.69fb86f. 
* gnu/packages/music.scm (tascam-gtk): Update to 0.4-0.69fb86f.
[inputs]: Replace libxml++-2 with libxml++-3.

Change-Id: Iae8ff22ee7ee5888ff4d24209f2f09fbecf52889
 2023-12-15 13:51:39 +01:00
Ricardo Wurmus
90cb402fbb
gnu: Add libxml++-3. 
* gnu/packages/gnome.scm (libxml++-3): New variable.

Change-Id: I2250766126f433b3f5dcc50cd7eaadec3acadad3
 2023-12-15 13:51:39 +01:00
Janneke Nieuwenhuizen
05c2afc5cb
gnu: dezyne: Update to 2.18.0. 
* gnu/packages/dezyne.scm (dezyne): Update to 2.18.0.
[inputs]: Add boost.
[arguments]: Change assoc-ref memes to use gexps.

Change-Id: I1212de52db6c2b07122e756c68597b1f8ddbb313
 2023-12-15 12:01:57 +01:00
Janneke Nieuwenhuizen
e11b57de73
gnu: Add scmackerel. 
* gnu/packages/dezyne.scm (scmackerel): New variable.
 2023-12-15 12:01:55 +01:00
Thomas Ieong
b681e339fa
services: Add rspamd-service-type. 
* gnu/services/mail.scm (rspamd-service-type): New variable.
* gnu/tests/mail.scm (%test-rspamd): New variable.
* doc/guix.texi: Document it.

Co-authored-by: Saku Laesvuori <saku@laesvuori.fi>
Change-Id: I7196643f087ffe9fc91aab231b69d5ed8dc9d198
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-14 23:12:24 +01:00
Greg Hogan
7ce0c79e7a
gnu: pypy: Update to 7.3.13. 
The validate-runpath error was previously reported in #57653.

Version update fixes the existing build errors.

* gnu/packages/python.scm (pypy3): Update to 7.3.13.
[source]: Update origin URI.
[arguments]<#:validate-runpath>: Disable check.
[arguments]<#:phases>: Update directory paths.

Change-Id: Ic6ab7dd77e30fa85d6fa5f000f9aa2528951b81e
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-14 23:12:24 +01:00
Ludovic Courtès
4017555367
services: hpcguix-web: Add ‘configuration’ action. 
* gnu/services/web.scm (hpcguix-web-shepherd-service): Define
‘config-file’ and use it.  Add ‘actions’ field.

Change-Id: I085df403270039ede3c13f21a5d60682c7510e2e
 2023-12-14 23:12:24 +01:00
Ludovic Courtès
1de1b975be
tests: childhurd: Prefer “-cpu max” over “-cpu host”. 
“-cpu host” can sometimes, for unclear reasons, lead to this error from
QEMU 8.1.1:

  qemu-system-x86_64: CPU model 'host' requires KVM or HVF

This commit fixes it.

Inspired by
<47b56e7c19>.

* gnu/tests/virtualization.scm (run-childhurd-test)[test]: Prefer
“-cpu max” over “-cpu host”.

Change-Id: I11a8a68bb0532fe1f3fd2c34b4a7a5fdb7bccb57
 2023-12-14 23:12:24 +01:00
Saku Laesvuori
59d65f66c5
services: guix: Allow gexps evaluating to a list of build-machines. 
* gnu/services/base.scm (guix-machines-files-installation): Handle
machines being a mixed list of build-machines and lists of
build-machines.
* doc/guix.texi (Base Services): Document it.

Change-Id: Ie404562ca0b564413233c3a624046da831893dc3
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-14 23:12:24 +01:00
Tomas Volf
a1347d09f1
gnu: libtorrent-rasterbar: Disable test_ssl test. 
It times out in the ci.guix.gnu.org, so this commit disables it.  It will be
re-enabled once solution is found.

* gnu/packages/bittorrent.scm
(libtorrent-rasterbar)[arguments]<#:phases>['check]: Disable test_ssl test.

Change-Id: Ib396fd8a1786e14baad72ae892bdd0fd3fe7a180
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-14 23:12:23 +01:00
Ludovic Courtès
8662741531
build-system/zig: Do not import (guix build syscalls). 
* guix/build-system/zig.scm (%zig-build-system-modules): Remove (guix
build syscalls), which is unused.

Change-Id: Ie91c46c68787e0a8ffa3cbde2c5fd2294b82ed15
 2023-12-14 23:12:23 +01:00
Guillaume Le Vaillant
ac61e9705f
gnu: txr: Remove obsolete fix. 
* gnu/packages/lisp.scm (txr)[arguments]: Remove 'inhibit-doc-syms-generation'
  phase.

Change-Id: Ibf29e28a82f1821cefbdc87e8bfdf3ffcd4219e5
 2023-12-14 10:49:23 +01:00
John Kehayias
8083c7abbf
gnu: xorg-server: Update to 21.1.10 [security fixes]. 
Fixes CVE-2023-6377 and CVE-2023-6478.  See the X.Org security advisory at
<https://lists.x.org/archives/xorg-announce/2023-December/003435.html> for
details.

* gnu/packages/xorg.scm (xorg-server): Update to 21.1.10.

Change-Id: I20ecf1a2b9fc15cafc1c57e0fa726c7cf3096a78
 2023-12-13 22:08:38 -05:00
Leo Famulari
4c4222f32a
.guix-authorizations: Update lfam's key. 
* .guix-authorizations: Update lfam's signing key fingerprint.

Change-Id: Ic34f364dfc46e403e1d431e5860a63b36143b6f3
 2023-07-23 22:26:01 -04:00
Philip McGrath
1b2505217c
gnu: racket: Update to 8.11.1. 
* gnu/packages/patches/racket-backport-8.10-rktboot.patch: Delete file.
* gnu/packages/patches/racket-backport-8.11-layered-docs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/racket/scm (%racket-origin)[patches]: Likewise.
(%racket-version): Update to 8.11.1.
(%zuo-version): Update to 1.7.
(racket)[inputs]<deinprogramm, draw, drracket, games, gui, htdp>
<parser-tools, plot, rackunit, redex, scribble, slideshow, typed-racket>
<srfi, string-constants, syntax-color, web-server, xrepl>: Update hashes.
<quickscript>: Likewise, and add snippet.
* gnu/packages/chez.scm (chez-scheme-for-racket): Update to
9.9.9-pre-release.18.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-13 12:58:43 +01:00
Ludovic Courtès
eb1f019f77
gnu: hpcguix-web: Update to 0.4.0. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.4.0.

Change-Id: I66a4689d7e3e93ed4085db937920374dbb5a796e
 2023-12-13 12:58:43 +01:00
MarcoFalke
d5ca4d4fd7
syscalls: Define riscv64 syscall ID for clone. 
* guix/build/syscalls.scm (clone): Add an entry for riscv64.

This allows the use of --container on riscv64.

Change-Id: I12b3cb5e2aa248266d006b6e456082f4ddc70e62
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-13 12:58:43 +01:00
Efraim Flashner
5f812344d2
gnu: rust-1.64: Don't make package public. 
* gnu/packages/rust.scm (rust-1.64): Use define, not define-public.

Change-Id: I475e8b1028a716f1d04a4aea5da4d6e7ca2a87d7
 2023-12-13 10:08:43 +02:00
Efraim Flashner
c9e1a72cc2
Merge branch 'rust-team' 
Change-Id: Iee33d7b9067d2180fd4b2e28d81716a251a53a01
 2023-12-13 09:28:20 +02:00
Daniel Ziltener
58bbb38c5b
gnu: chicken: Update to 5.3.0. 
* gnu/packages/chicken.scm (chicken): Update to 5.3.0.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: Id3ec15da586ddfc6dae924c0c8031fd7a4613660
 2023-12-12 11:53:36 -05:00
Guillaume Le Vaillant
17b407ccb6
gnu: inspectrum: Update to 0.3.1. 
* gnu/packages/radio.scm (inspectrum): Update to 0.3.1.

Change-Id: I51e81e328b332a32e19ab169c602875b21256c4c
 2023-12-12 15:50:01 +01:00
Andre A. Gomes
3b03873476
gnu: nyxt: Update to 3.10.0. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.10.0.
  [source]: Remove snippet.
  [inputs]: Remove sbcl-nasdf.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: Id131d7168133eb8a31214819c7605d876a1b38f3
 2023-12-12 15:50:01 +01:00
Pierre Neidhardt
40f1f5b0ca
gnu: Add cl-machine-state. 
* gnu/packages/lisp-xyz.scm (cl-machine-state, ecl-machine-state,
sbcl-machine-state): New variables.

Change-Id: I48d98dabc2fab1d74bc83857cb750efc29e85ab1
 2023-12-12 13:28:45 +01:00
Efraim Flashner
c7215819e1
Revert "gnu: openssl: Don't error when targeting avr." 
This reverts commit baeff7f546.
 2023-12-12 13:58:16 +02:00
Efraim Flashner
92e2de6fb4
ci: Don't cross compile to avr. 
* gnu/ci.scm (cross-jobs)[pointless?]: Don't build any packages for avr.

Change-Id: I1728727874d65461b82364e71b70c7d1fd050d90
 2023-12-12 13:58:16 +02:00
Pierre Neidhardt
355a57fb84
gnu: sbcl-serapeum: Update to 20231203. 
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20231203.

Change-Id: If8c364cde4dce2943d6e21770eec90c1ab05bc67
 2023-12-12 11:25:19 +01:00
Efraim Flashner
baeff7f546
gnu: openssl: Don't error when targeting avr. 
* gnu/packages/tls.scm (target->openssl-target): Add case for avr.

Change-Id: I1cfc8b50fa4b2b864f8f8aa8898cc405ffc02580
 2023-12-12 09:32:10 +02:00
Efraim Flashner
f03029a00e
gnu: system->llvm-target-arch: Add avr target. 
* gnu/packages/llvm.scm (system->llvm-target-arch): Add case for avr.

Change-Id: I5291d396ad513cfecdf8f0a6f799ea095fc8d994
 2023-12-12 08:57:10 +02:00
Efraim Flashner
0cc7fc0025
gnu: make-crust-package: Don't run from avr. 
* gnu/packages/firmware.scm (make-crust-package)[arguments]: In
make-flags don't create tools which can be run from avr.

Change-Id: I118b4941889b884de1e491ace3818d878a887d7c
 2023-12-12 08:45:46 +02:00
Hilton Chain
5df4084ecd
gnu: linux-libre: Update to 6.6.6. 
This kernel release fixes WiFi regressions introduced in 6.6.5:

https://lore.kernel.org/lkml/2023121141-mongoose-dazzler-be1b@gregkh/T/#t
https://cdn.kernel.org/pub/linux/kernel/v6.x/ChangeLog-6.6.6

* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.6.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I502e166eaa7c179c52c581e311d3055032448be9
 2023-12-12 06:54:15 +08:00
Zhu Zihao
46ec8592f7
gnu: lean: Update to 3.51.1. 
* gnu/packages/lean.scm (lean): Update to 3.51.1.
[home-page]: Use new home page.
[arguments]<#:phases>: Remove stale phase 'patch-tests-shebangs'.
[inputs]: Remove bash-minimal.

Change-Id: Ib90a124b4a6b06fb30223ad4b9254249e56dd086
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-12-11 23:39:05 +01:00