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Author SHA1 Message Date
Ricardo Wurmus
c7646437a2
gnu: Add python-contourpy. 
* gnu/packages/python-xyz.scm (python-contourpy): New variable.

Change-Id: Icbbe4a358242095fae36639c5c039c029eea4ee3
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
037cb397c1
gnu: python-kiwisolver: Update to 1.4.5. 
* gnu/packages/maths.scm (python-kiwisolver): Update to 1.4.5.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-typing-extension.
[native-inputs]: Add python-cppy, python-pytest, and python-setuptools-scm.

Change-Id: Iea75440dc58fa342dcf4a2a381b6dcc17e71e618
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
9ea9346168
gnu: Add python-cppy. 
* gnu/packages/python-xyz.scm (python-cppy): New variable.

Change-Id: I584fcddc3430960098d65f1916278a7473249a87
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
fa5d8c839a
gnu: python-umap-learn: Update to 0.5.5. 
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove 'numpy-compatibility and custom 'check phases.

Change-Id: I2123f66519730d43e454d9536e8cb7b6c4569d56
 2024-01-16 12:44:35 +01:00
Ricardo Wurmus
ca1749c243
gnu: python-pynndescent: Update to 0.5.11. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.11.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[propagated-inputs]: Add python-importlib-metadata.

Change-Id: I14f15ea98157ed15b360971c30fe00c5f00af4a7
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
247c427302
gnu: python-scikit-learn: Update to 1.3.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.3.2.
[build-system]: Use pyproject-build-system.
[arguments]: Move test flags to #:test-flags.
[native-inputs]: Replace python-cython with python-cython-0.29.35.

Change-Id: Iac6107dae752c42d9f57448a66eed0526974d57e
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
e759380796
gnu: python-matplotx: Disable test_png test. 
* gnu/packages/python-xyz.scm (python-matplotx)[arguments]: Disable test_png
test.

Change-Id: I19a954786d828a1b717c9c4021ad7f5c6172366c
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
2057f778a4
gnu: python-pypng: Update to 0.20220715.0. 
* gnu/packages/python-xyz.scm (python-pypng): Update to 0.20220715.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add 'pre-check phase.
[native-inputs]: Add python-pytest.

Change-Id: Ic47c653f94a688048383eba216f01d7987625680
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
e2c76bdd83
gnu: python-scikit-image: Update to 0.22.0. 
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; remove custom 'build phase; simplify 'check
phase; enable all tests.
[propagated-inputs]: Add python-lazy-loader.
[native-inputs]: Add meson-python, python-numpydoc, python-packaging, and
python-wheel.

Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
32edfc4a85
gnu: python-imageio: Update to 2.33.1. 
* gnu/packages/python-xyz.scm (python-imageio): Update to 2.33.1.
[propagated-inputs]: Remove python-psutil; add python-tifffile.
[native-inputs]: Add python-black, python-flake8, python-fsspec, and
python-pytest-cov.

Change-Id: I5c64d939f5ee94ac9ec8fdbd7b51cd978b7df0fb
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
6fbbffd6ef
gnu: python-lazy-loader: Update to 0.3. 
* gnu/packages/python-xyz.scm (python-lazy-loader): Update to 0.3.
[native-inputs]: Add python-pre-commit.

Change-Id: Id4f8b61e6e60dd6da04beb8c1e4d064dc34d994c
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
299455fef2
gnu: python-tifffile: Update to 2023.12.9. 
* gnu/packages/python-xyz.scm (python-tifffile): Update to 2023.12.9.
[propagated-inputs]: Remove python-imagecodecs.
[native-inputs]: Add python-pytest.

Change-Id: I2567bef390e286ed4399cc67b80a9df503f53c0a
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
accd091fff
gnu: python-scipy: Update to 1.11.4. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4.
[arguments]: Use mesonpy backend.
[inputs]: Replace pybind11 with pybind11-2.10.
[native-inputs]: Add python-click, python-doit, python-pooch, and
python-pydevtool; replace python-cython with python-cython-0.29.35.

Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
22c5d2d835
gnu: meson-python: Update to 0.15.0. 
* gnu/packages/build-tools.scm (meson-python): Update to 0.15.0.
[arguments]: Add phase 'delete-directory.
[propagated-inputs]: Add python-cython, python-pyproject-metadata-0.7, and
python-typing-extensions.
[native-inputs]: Add python-pytest-cov.

Change-Id: I412af929c9e0485aa2a15e316d247f58e6f3477b
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
08f48f2939
gnu: Add python-pydevtool. 
* gnu/packages/python-xyz.scm (python-pydevtool): New variable.

Change-Id: I325b81fa6421094a5a64084c06e66b8fa136e270
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
1c91d45724
gnu: Add python-pyproject-metadata-0.7. 
* gnu/packages/python-xyz.scm (python-pyproject-metadata-0.7): New variable.

Change-Id: I7c47c911fa2a33c0b5711b0009f31b3e32c1c1d7
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
1fb5d95e75
gnu: python-doit: Update to 0.36.0. 
* gnu/packages/python-xyz.scm (python-doit): Update to 0.36.0.
[build-system]: Use pyproject-build-system.
[arguments]: Disable test_execute test.
[propagated-inputs]: Remove python-pyinotify; add python-importlib-metadata.
[description]: Add missing spaces between two sentences.

Change-Id: I1d046201c9bef63477f8fb0a2f8494bffbbbc711
 2024-01-16 12:44:34 +01:00
Ricardo Wurmus
1d91698478
gnu: Add pybind11-2.10. 
* gnu/packages/python-xyz.scm (pybind11-2.10): New variable.

Change-Id: Ia7915af3baca36b0677d3f762046585abc473f56
 2024-01-16 12:44:33 +01:00
Ricardo Wurmus
ce451cdcb8
gnu: Add python-cython-0.29.35. 
* gnu/packages/python-xyz.scm (python-cython-0.29.35): New variable.

Change-Id: I09ec851a2051e885f6417524bbeeb81b743bef0b
 2024-01-16 12:44:33 +01:00
Ricardo Wurmus
33d0a549e9
gnu: Add python-pydoc-markdown. 
* gnu/packages/python-xyz.scm (python-pydoc-markdown): New variable.

Change-Id: I03e45c2b87f626f7a8113d785c72c14a301d79be
 2024-01-16 12:36:08 +01:00
Ricardo Wurmus
b05fe5c763
gnu: python-yapf: Update to 0.32.0. 
* gnu/packages/python-xyz.scm (python-yapf): Update to 0.32.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Add python-importlib-metadata, python-platformdirs, and
python-tomli.

Change-Id: I30fa0b9d643f6585624da87d5c1a1edbb59425c4
 2024-01-16 12:21:07 +01:00
Ricardo Wurmus
1fcf3d2a0c
gnu: Add python-docspec-python. 
* gnu/packages/python-xyz.scm (python-docspec-python): New variable.

Change-Id: Ic607d0a34a8601dd464251edd8c8509314b7489c
 2024-01-16 11:56:34 +01:00
Ricardo Wurmus
8721b9c1fb
gnu: Add python-nr-util. 
* gnu/packages/python-xyz.scm (python-nr-util): New variable.

Change-Id: I26dda5e5bc03334fb476e3f1fd2fa6aaf93a91c3
 2024-01-16 11:37:07 +01:00
Artyom V. Poptsov
21f5d20d68
gnu: go-github-com-arceliar-ironwood: Update to v0.0.0-20231127131626-465b82dfb5bd. 
* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Update to
  v0.0.0-20231127131626-465b82dfb5bd.

Change-Id: Ia94d7c88e54d33f7bb7b5054a757d7ef203d47c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-15 23:18:58 +00:00
Artyom V. Poptsov
5358b308a1
gnu: yggdrasil: Update to 0.5.4. 
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.4.

Change-Id: I4f386e1b69627b0c5a6095c42274b8a8bff8bfd9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-15 23:18:35 +00:00
Troy Figiel
eb0f35e16d
gnu: hypercorn: Reformat with guix style. 
* gnu/packages/python-web.scm (hypercorn): Reformat with guix style.
 2024-01-15 22:43:58 +00:00
Troy Figiel
68763a00a3
gnu: hypercorn: Adjust inputs. 
* gnu/packages/python-web.scm (hypercorn)[propagated-inputs]: Add
python-exceptiongroup and python-tomli. Remove python-toml and
python-typing-extensions.
[native-inputs]: Remove python-mock.
 2024-01-15 22:43:35 +00:00
Ricardo Wurmus
287dee537b
gnu: Remove python-tslearn. 
This package now lives in the guix-science channel.

* gnu/packages/machine-learning.scm (python-tslearn): Remove variable.

Change-Id: I655df3417d258cb1231746626817fde9628e9569
 2024-01-15 23:35:25 +01:00
Ricardo Wurmus
ddde736722
gnu: Add python-docspec. 
* gnu/packages/python-xyz.scm (python-docspec): New variable.

Change-Id: I3103bde3483273a335156b38de742f493fd366f1
 2024-01-15 23:06:15 +01:00
Ricardo Wurmus
12ae026e51
gnu: Add python-databind-json. 
* gnu/packages/python-xyz.scm (python-databind-json): New variable.

Change-Id: Iaab64e28ba6772c14704ff67cffab21a2f555460
 2024-01-15 23:06:15 +01:00
Ricardo Wurmus
97692be948
gnu: Add python-databind-core. 
* gnu/packages/python-xyz.scm (python-databind-core): New variable.

Change-Id: I45bf0ec5ef123ea20c50e2ca3caf930bfba45eea
 2024-01-15 23:06:15 +01:00
Ricardo Wurmus
6b81503bae
gnu: Add python-typeapi. 
* gnu/packages/python-xyz.scm (python-typeapi): New variable.

Change-Id: Id89f3152bcd593d677c4fcb7c98d586cd50e820b
 2024-01-15 23:06:15 +01:00
Ricardo Wurmus
7dfe41aa71
gnu: Add python-nr-stream. 
* gnu/packages/python-xyz.scm (python-nr-stream): New variable.

Change-Id: I59489156e4675a64a31b1cb7f62b7c845c005ce8
 2024-01-15 23:06:15 +01:00
Ricardo Wurmus
aa51d1d25f
gnu: Add python-nr-date. 
* gnu/packages/python-xyz.scm (python-nr-date): New variable.

Change-Id: I4251aef073df29ccada70f1398bce38cfb8962ba
 2024-01-15 23:06:15 +01:00
Ricardo Wurmus
7a2d128779
gnu: Add python-namex. 
* gnu/packages/python-xyz.scm (python-namex): New variable.

Change-Id: I02d4ed5e426f0b432c27086aa90628ae54759ca2
 2024-01-15 23:06:15 +01:00
Troy Figiel
19db1551dc
gnu: python-requests-kerberos: Enable tests. 
* gnu/packages/python-web.scm (python-requests-kerberos): Enable tests.
[source]: Replace the PyPI release by the Github release.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-pytest and python-pytest-mock.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iea750cf722293c4054a6c6e43787806f8f2fd5e2
 2024-01-15 21:47:27 +00:00
Troy Figiel
da3764b75c
gnu: python-requests-kerberos: Fix build. 
* gnu/packages/python-web.scm (python-requests-kerberos)[propagated-inputs]:
Add python-gssapi.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I65d1fac0339a119e7a4912d5db150b4adb7586ad
 2024-01-15 21:43:20 +00:00
Sharlatan Hellseher
7061f0b1d0
gnu: python-pyspnego: Propagate python-krb5. 
* gnu/packages/python-xyz.scm (python-pyspnego)[propagated-inputs]: Add
python-krb5.

Change-Id: I2c8ccbd66394cb90ea047f7327d05ecbfe2ec22d
 2024-01-15 21:29:49 +00:00
Troy Figiel
bba2fa646d
gnu: Add python-krb5. 
* gnu/packages/python-xyz.scm (python-krb5): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-15 21:15:09 +00:00
Sharlatan Hellseher
1e3f1f9f92
gnu: Remove python-activepapers. 
<https://issues.guix.gnu.org/68425>

This package fails to build and has been not maintained since 2017.

* gnu/packages/python-xyz.scm (python-activepapers): Remove variable.

Reported-by: Troy Figiel <troy@troyfigiel.com>
Change-Id: Id1e968cd4e06919a80ad05e5c8d3fb207426fdde
 2024-01-15 20:56:22 +00:00
Ludovic Courtès
162d6a2fdd
gnu: hpcguix-web: Add explicit dependency on Guile-GnuTLS. 
This is necessary in hpcguix-web 0.4.1 to connect to
https://disarchive.guix.gnu.org.

* gnu/packages/web.scm (hpcguix-web)[arguments]: In ‘wrap-program’ phase,
add guile-gnutls to the wrapper’s search path.
[inputs]: Add GUILE-GNUTLS.

Change-Id: Ic4d6f65adeb763a404fc24c7e1c87fd7d26550c7
 2024-01-15 08:57:01 +01:00
Tanguy Le Carrour
f6afaf58b0
gnu: fish-foreign-env: Update to 0.20230823. 
* gnu/packages/shells.scm (fish-foreign-env): Update to 0.20230823.
[arguments]: Do no substitute in file that no longer exists.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I04138c1d3e8c174b2197e5ca60aaca4caa5453cc
 2024-01-14 23:00:04 +01:00
Ludovic Courtès
68f04aa339
gnu: cuirass: Update to 7bcd3d0. 
* gnu/packages/ci.scm (cuirass): Update to 7bcd3d0.

Change-Id: Iefc460df509a2c006f3a49d6050ef08940ed2850
 2024-01-14 23:00:04 +01:00
Jack Hill
ef270f9d73
gnu: openssh: Fix build on ppc64le. 
* gnu/packages/ssh.scm (openssh)[source]:
Use 'openssh-gcc-13-ppc64le-fzero-call-used-regs.patch'.
* gnu/packages/patches/openssh-gcc-13-ppc64le-fzero-call-used-regs.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Reported-by: Marcel van der Boom <marcel@van-der-boom.nl>.

Change-Id: I41b1350b2cdd1487a8fd69b13b64f63c0dc166c9
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-14 23:00:04 +01:00
Artyom V. Poptsov
80bec14a9e
gnu: guile-ssh: Update to 0.16.4. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.4.
  [arguments]: Improve the style.

Change-Id: Ib7d741e7f4fc7a1fc167cfa4f7953f84d9f4d390
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-14 23:00:04 +01:00
Ludovic Courtès
fe736803da
gnu: hpcguix-web: Update to 0.4.1. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.4.1.

Change-Id: I8bd642735b3cbdf03b07cdd184295b6e32a4e6f7
 2024-01-14 23:00:03 +01:00
Tomas Volf
0aec4e7b70
tests: install: Fix encrypted-home-os, encrypted-home-os-key-file tests. 
The installation no longer fits into the 1.6G, leading to a warning while
running the test:

    guix system: warning: at least 1526.8 MB needed but only 1408.4 MB available in /mnt

Followed by a failure:

     93% [####################################################################     ]note: build failure may have been caused by lack of free disk space
    builder for `/gnu/store/8wl8q8nc1za0vlyv21jpzwgml45njgk2-module-import-compiled.drv' failed with exit code 1

This commit increases the root partition to 2G, making the test pass again.

* gnu/tests/install.scm (%encrypted-root-installation-script): Increase the
root partition to 2G.
(%test-encrypted-home-os), (%test-encrypted-home-os-key-file): Increase the
target size to 3G to accommodate for the larger root partition.

Change-Id: I0f7092f7b7fc9992d3f895a1eaecf1f2065b7360
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-14 23:00:03 +01:00
Tomas Volf
2bfff0da33
tests: install: Fix encrypted-root-os test. 
The installation no longer fits into the 1.6G, leading to a warning while
running the test:

    guix system: warning: at least 1526.8 MB needed but only 1408.4 MB available in /mnt

Followed by a failure:

     93% [####################################################################     ]note: build failure may have been caused by lack of free disk space
    builder for `/gnu/store/8wl8q8nc1za0vlyv21jpzwgml45njgk2-module-import-compiled.drv' failed with exit code 1

This commit increases the root partition to 2G, making the test pass again.

* gnu/tests/install.scm (%encrypted-root-installation-script): Increase the
root partition to 2G.

Change-Id: I4cc5c78cfbd93ab2ae92ec77603ce6fee0289843
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-14 23:00:03 +01:00
Tomas Volf
a355131ba8
tests: install: Use the smallest possible iteration time for LUKS. 
For testing that installation works, there is no need to spent 2000ms (the
default) iterating while generating the encryption key.  This commit therefore
sets the iteration time to the lowest possible value, 1(ms).

* gnu/tests/install.scm (%encrypted-root-installation-script):
(%encrypted-home-installation-script):
(%encrypted-root-not-boot-installation-script): Pass -i 1 to luksFormat
invocation.

Change-Id: Iab79459b48bebe4d293b18290a236c6414fb27fc
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-14 23:00:03 +01:00
Tomas Volf
10ea0dba00
tests: Add `encrypted-home-os-key-file' installation test. 
Based on encrypted-home-os, this test verifies unlocking via a key file.

* gnu/tests/install.scm (%encrypted-home-os-key-file),
(%encrypted-home-os-key-file-source): New variables.
(%test-encrypted-home-os-key-file): New exported variables.
(%encrypted-home-installation-script): Generate initrd with a key file for
unlocking the LUKS.

Change-Id: I04460155284bdef7e18da645f2b4b26bd8e86636
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-14 23:00:03 +01:00