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4194 commits

Author SHA1 Message Date
Ricardo Wurmus
cc6ed47737 gnu: Add plink. 
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
 2015-06-29 12:54:48 +02:00
Eric Bavier
5c852e085d gnu: synergy: Upgrade to 1.7.3. 
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
  [source]: Use github for source download.  Add snippet to remove
  bundled source and binaries.
  [inputs]: Add openssl.
  [arguments]: Copy example configuration files to out during 'install
  phase.
 2015-06-28 12:03:30 -05:00
Ricardo Wurmus
b5ad1659ba gnu: Add sfarkxtc. 
* gnu/packages/compression.scm (sfarkxtc): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus
646898b358 gnu: Add sfarklib. 
* gnu/packages/compression.scm (sfarklib): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus
fcbeb00b70 gnu: Add Guitarix. 
* gnu/packages/audio.scm (guitarix): New variable.
 2015-06-28 18:59:57 +02:00
Ricardo Wurmus
fb029d463d gnu: ardour: Update to 4.1. 
* gnu/packages/audio.scm (ardour): Update to 4.1.
 2015-06-28 14:34:08 +02:00
Ricardo Wurmus
58593975b0 gnu: Add libtar. 
* gnu/packages/compression.scm (libtar): New variable.
 2015-06-28 12:38:46 +02:00
Claes Wallin
60def646bb gnu: Add pv. 
* gnu/package/pv.scm (pv): New file.
 * gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-06-27 17:27:49 +03:00
Ludovic Courtès
c92f1c0a33 gnu: Refer to 'gcc' instead of 'gcc-4.9'. 
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
  libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
  (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
  %gcc-static, %gcc-stripped): Likewise.
 2015-06-26 17:06:30 +02:00
Ludovic Courtès
744985761a gnu: youtube-dl: Update to 2015.06.25. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
 2015-06-26 16:56:43 +02:00
Ricardo Wurmus
3a1bfe186d gnu: Add python2-fastlmm. 
* gnu/packages/python.scm (python2-fastlmm): New variable.
 2015-06-26 15:29:01 +02:00
Ricardo Wurmus
0dde623211 gnu: Add python2-pysnptools. 
* gnu/packages/python.scm (python2-pysnptools): New variable.
 2015-06-26 15:29:01 +02:00
Mark H Weaver
1c080cb68a gnu: nettle: Disable ifunc method of library initialization. 
* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
  phase.
 2015-06-25 16:47:59 -04:00
Ricardo Wurmus
19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus
eed67cbb8f gnu: Add default GCC and default gfortran. 
* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
 2015-06-25 18:28:54 +02:00
宋文武
96693d1d92 gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'. 
This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base.

* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
  (gst-plugins-base)[native-search-paths]: Remove.
 2015-06-25 10:09:08 +08:00
Ludovic Courtès
31fbf4b637 gnu: pius: Depend on GnuPG 2.0 rather than 2.1. 
* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.
 2015-06-24 18:05:03 +02:00
Ricardo Wurmus
6d149ec349 gnu: julia: Use modify-phases syntax and add return values. 
* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
  build phases and add missing return values.
 2015-06-24 15:34:55 +02:00
Ricardo Wurmus
83a0db178f gnu: r: Use gfortran-4.9. 
* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
  gfortran-4.9.
 2015-06-24 12:03:00 +02:00
Ricardo Wurmus
c69a8b7b1b gnu: Add gfortran 4.9. 
* gnu/packages/gcc.scm (gfortran-4.9): New variable.
 2015-06-24 12:03:00 +02:00
Ben Woodcroft
c684629f7c gnu: Add hmmer. 
* gnu/packages/bioinformatics.scm (hmmer): New variable.
 2015-06-24 00:39:22 -04:00
宋文武
5a72e4665a gnu: screen: Install the Info manual. 
* gnu/packages/screen.scm (screen)[native-inputs]: New field.
 2015-06-24 09:20:27 +08:00
Ricardo Wurmus
ec8da0e25d gnu: Add setBfree. 
* gnu/packages/audio.scm (setbfree): New variable.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus
9e8505343e gnu: ftgl: Propagate "freetype". 
* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from
  "inputs" to "propagated-inputs".
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus
0543c32659 gnu: faust: Remove prebuilt library in snippet. 
* gnu/packages/audio.scm (faust)[arguments]: Remove the phase
  'remove-prebuilt-library...
* gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus
4758eaaa2d gnu: star: Update to 2.4.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.
 2015-06-23 18:37:16 +02:00
Ricardo Wurmus
0ec8b206d4 gnu: miso: Install executables. 
* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
  "setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
  and "python2-pytz".
 2015-06-23 13:13:03 +02:00
Ricardo Wurmus
c4325f6269 gnu: Add idr. 
* gnu/packages/bioinformatics.scm (idr): New variable.
 2015-06-23 10:55:52 +02:00
Mark H Weaver
f3457e7001 gnu: linux-libre: Update to 4.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.
  [inputs]: Remove gcc-4.9, since it is now the default compiler.
* gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf:
  Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>.
 2015-06-23 02:53:00 -04:00
宋文武
b7a3cf11a8 gnu: Add gnome-klotski. 
* gnu/packages/gnome.scm (gnome-klotski): New variable.
 2015-06-23 14:16:42 +08:00
Mark H Weaver
607a04ae80 gnu: Add gom. 
* gnu/packages/gnome.scm (gom): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
86d6a893b3 gnu: Add clutter-gst. 
* gnu/packages/gnome.scm (clutter-gst): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
bf7f17bad8 gnu: Add clutter-gtk. 
* gnu/packages/gnome.scm (clutter-gtk): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
fb182b8a44 gnu: Add clutter. 
* gnu/packages/gnome.scm (clutter): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver
ba421ab734 gnu: Add cogl. 
* gnu/packages/gnome.scm (cogl): New variable.
 2015-06-23 01:04:53 -04:00
Andreas Enge
22ad39187c gnu: sipwitch: Update to 1.9.8. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.8.
 2015-06-23 00:19:25 +02:00
Ludovic Courtès
89223417fd gnu: commencement: Make a few variables private. 
This removes ambiguity warnings when installing these packages.

* gnu/packages/commencement.scm (glibc-final, gcc-final,
  glibc-utf8-locales-final): Make private.
 2015-06-22 23:17:16 +02:00
Ludovic Courtès
790c3717d2 gnu: imagemagick: Do not retain reference to "doc" output. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Use 'modify-phases'.
  Add 'strip-configure-xml' phase.
 2015-06-22 23:17:16 +02:00
Andreas Enge
8c2dbe3f9d gnu: ucommon: Update to 6.3.4. 
* gnu/packages/telephony.scm (ucommon): Update to 6.3.4.
 2015-06-22 12:40:53 +02:00
Mark H Weaver
bf76d98789 Merge branch 'master' into core-updates 2015-06-21 14:30:22 -04:00
Mark H Weaver
fc9ff915b3 gnu: jemalloc: Build with gcc-4.8 on i686. 
* gnu/packages/jemalloc.scm (jemalloc)[native-inputs]: When compiling natively
  on i686, add gcc-4.8.
 2015-06-21 14:14:04 -04:00
Mark H Weaver
194782a881 gnu: lame: Build with gcc-4.8 on i686. 
* gnu/packages/mp3.scm (lame)[native-inputs]: When compiling natively on i686,
  add gcc-4.8.
 2015-06-21 14:08:39 -04:00
Ben Woodcroft
12b04cbee6 gnu: Add fasttree. 
* gnu/packages/bioinformatics.scm (fasttree): New variable.
 2015-06-21 03:30:40 -04:00
Mark H Weaver
407838510d gnu: ffmpeg: Update to 2.7.1. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.1.
 2015-06-21 01:18:03 -04:00
Mark H Weaver
4d6d82818a gnu: totem-pl-parser: Add gobject-introspection support. 
* gnu/packages/gnome.scm (totem-pl-parser)[native-inputs]: Add
  gobject-introspection.
 2015-06-20 23:51:41 -04:00
Mark H Weaver
22a6ad6a81 gnu: totem-pl-parser: Move glib, gmime, and libxml2 to propagated-inputs. 
* gnu/packages/gnome.scm (totem-pl-parser)[inputs]: Move glib, gmime, and
  libxml2 to ...
  [propagated-inputs]: ... here.
 2015-06-20 23:51:41 -04:00
Mark H Weaver
180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Mark H Weaver
d80b0d4af5 gnu: gnome-doc-utils: Add python2-libxml2 to native-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/gnome.scm (gnome-doc-utils)[native-inputs]: Add
  python2-libxml2.
 2015-06-19 23:03:04 -04:00
Mark H Weaver
264d57b68a gnu: itstool: Add python2-libxml2 to propagated-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/glib.scm (itstool)[propagated-inputs]: Add python2-libxml2.
 2015-06-19 23:02:36 -04:00
Mark H Weaver
9a6953d28a gnu: mdadm: Add compilation fix for gcc-4.9. 
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (mdadm): Add patch.
 2015-06-19 22:42:12 -04:00