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Author SHA1 Message Date
Ricardo Wurmus
af0f729823
gnu: r-ggeffects: Update to 1.7.1. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.7.1.

Change-Id: Ia9fdfd5ac287d9c85ea7b1303e176cb62670a0b2
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
c371fccfff
gnu: r-slam: Update to 0.1-53. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-53.

Change-Id: Ifacc47e340dc4c7c5cc00705e661e0ad7d59ed82
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
ee67626d51
gnu: r-golem: Update to 0.5.1. 
* gnu/packages/cran.scm (r-golem): Update to 0.5.1.

Change-Id: I4dbe75ad60b944b9f620e38e78ebecd4f055da0b
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
b5c6fd5878
gnu: r-insight: Update to 0.20.4. 
* gnu/packages/cran.scm (r-insight): Update to 0.20.4.

Change-Id: I17b052a82b76c7c0e98d7a1a2c88dbeaf841c93e
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
db0649de27
gnu: r-openxlsx: Update to 4.2.7. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.7.

Change-Id: I8e02c793104ab017e80faf41fa043ac37d53eaf1
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
b01480a866
gnu: r-ctrdata: Update to 1.19.2. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.19.2.

Change-Id: Ib73a643b49c5ef774622bc50b294cc364a53ffe8
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
1d6d048df9
gnu: r-servr: Update to 0.31. 
* gnu/packages/cran.scm (r-servr): Update to 0.31.

Change-Id: Ia91b99deb3ca1d3e4a032017aa5d141a54e803d5
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
603397e0dc
gnu: r-vegan: Update to 2.6-8. 
* gnu/packages/cran.scm (r-vegan): Update to 2.6-8.

Change-Id: Ibcc5edca0109d1abb0c91797c839b9ad38f9f827
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
4b48e54331
gnu: r-climaemet: Update to 1.4.0. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.4.0.
[propagated-inputs]: Add r-xml2.

Change-Id: I8a1250894c6daad16f113ec67e5a22543c35d395
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
0a62e33064
gnu: r-broom-helpers: Update to 1.17.0. 
* gnu/packages/cran.scm (r-broom-helpers): Update to 1.17.0.
[propagated-inputs]: Add r-cards.

Change-Id: I11f08aa6500d9d88dc32ce49d72939078c4596cf
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
d6acde89b0
gnu: r-valr: Update to 0.8.2. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.8.2.

Change-Id: Ief21d6bdf38193d996df513e16ae74350e8ff92c
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
7b6c2deac7
gnu: r-archivist: Update to 2.3.8. 
* gnu/packages/cran.scm (r-archivist): Update to 2.3.8.
[native-inputs]: Remove r-knitr.

Change-Id: I826db8b923c7954aafab2bb922ca814e6b718373
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
f46da63454
gnu: r-geometry: Update to 0.5.0. 
* gnu/packages/cran.scm (r-geometry): Update to 0.5.0.

Change-Id: I8097c44562c17e5892e55529894664ef9f1ea221
 2024-09-06 23:53:47 +02:00
Ricardo Wurmus
ab2f80e6cd
gnu: Add r-cards. 
* gnu/packages/cran.scm (r-cards): New variable.

Change-Id: I17c61d254407574610f78cb4afd21d8829632922
 2024-09-06 23:53:47 +02:00
Vagrant Cascadian
18d02443e1
gnu: lcsync: Update to 0.3.1. 
* gnu/packages/networking.scm (lcsync): Update to 0.3.1.
 2024-09-06 14:04:37 -07:00
Vagrant Cascadian
4e60d5dfb4
gnu: lcrq: Add compiler optimizations. 
* gnu/packages/networking.scm (lcrq)[arguments]: Pass compiler optimizations
to configure. [phases]: Add 'speedtest phase.
 2024-09-06 14:04:27 -07:00
Vagrant Cascadian
695eb1e41c
gnu: lcrq: Update to 0.2.1. 
* gnu/packages/networking.scm (lcrq): Update to 0.2.1.
 2024-09-06 14:04:17 -07:00
David Thompson
8485eb6e96
gnu: guile-hoot: Update to 0.5.0. 
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.5.0.

Change-Id: I6f205218eb9b2044378ebbda736407a3a85035b1
 2024-09-06 14:09:10 -04:00
jgart
0cadadad3b
gnu: trealla: Update to 2.55.35. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.35.

Change-Id: Ibdc23c3f443d55a4e2f8c256531b64a97fc42c2f
 2024-09-06 12:53:19 -05:00
jgart
2cc5c836c5
gnu: trealla: Update to 2.55.34. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.34.

Change-Id: Ida254b8f5877291cbcf8ac6ccb5e45a2f6d79a7f
 2024-09-06 12:53:18 -05:00
Andreas Enge
904631033e
Add file to core-packages team. 
* etc/teams.scm (core-packages): Add multiprecision.scm, which contains
inputs for gcc.

Change-Id: I36bf34450942c55529a471838fcfca29ceb9ae45
 2024-09-06 18:41:34 +02:00
Andreas Enge
997eabecc0
Add myself to teams. 
* etc/teams.scm: Add teams to myself.

Change-Id: I4d8c5bc5144cdd094063960c079527628ace4bbc
 2024-09-06 18:41:31 +02:00
Zheng Junjie
643e7ecbe6
gnu: kmime: Disable testFancyFormat test. 
Fixes <issues.guix.gnu.org/73067>

* gnu/packages/kde-pim.scm (kmime)[arguments]: Disable testFancyFormat test.

Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba
 2024-09-07 00:31:49 +08:00
Zheng Junjie
2c8e2933f4
gnu: qcoro-qt6: Adjust synopsis. 
* gnu/packages/qt.scm (qcoro-qt6)[synopsis]: Adjust it.

Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-09-06 22:47:21 +08:00
Doğan Çeçen
4d19bacc8e
gnu: qcoro-qt: Build with -fPIC 
* gnu/packages/qt.scm (qcoro-qt5, qcoro-qt6)[arguments]: Adjust
  configure-flags to add -fPIC to CMAKE_CXX_FLAGS.

Change-Id: I5ed2ee18cec120b282863ce6a5f6b6b149059515
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-09-06 22:47:21 +08:00
Roman Scherer
e308bbe0bf
gnu: kwin: Disable failing test on aarch64. 
* gnu/packages/kde-plasma.scm (kwin)[arguments]: Disable failing test on
aarch64.

Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-09-06 22:47:21 +08:00
Andy Tai
444b4bbcc5
gnu: nano: Update to 8.2. 
* gnu/packages/text-editors.scm (nano): Update to 8.2.

Change-Id: I72d3ead40cc5cabf52931567195d6bafd3e86d6e
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-09-06 22:47:21 +08:00
Zheng Junjie
776334bfdb
gnu: flatpak: Update to 1.14.10 [security fixes]. 
Fixes CVE-2024-42472.
Fixes <https://issues.guix.gnu.org/73059>.

* gnu/packages/package-management.scm (flatpak): Update to 1.14.10.
* gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: Adjust it.

Change-Id: Ia0bd866ee46e8b0cd24d37d14df61cdc22692d4e
 2024-09-06 22:47:21 +08:00
Zheng Junjie
fc20559209
gnu: bubblewrap: Update to 0.10.0. 
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.10.0.
[source]: Switch to git-fetch.
[build-system]: Switch to meson-build-system.
[native-inputs]: Add pkg-config.
[arguments]: Use G-expressions, Remove trailing #t.

Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba
 2024-09-06 22:47:17 +08:00
Nicolas Goaziou
d4fbd1ab34
gnu: xournalpp: Show icons. 
Fixes: <https://issues.guix.gnu.org/51968>

* gnu/packages/pdf.scm (xournalpp)[arguments]: Add phase to wrap
GDK_PIXBUF_MODULE_FILE.
[inputs]: Add ADWAITA-ICON-THEME.

Change-Id: Ie0e20249462c66f974b2fe1e3156d5fc9cb01b62
 2024-09-06 12:02:08 +02:00
Maxime Devos
c1283e2039
activation: Fix TOCTTOU in mkdir-p/perms. 
Fixes <https://issues.guix.gnu.org/47584>.

I removed the 'Based upon mkdir-p from (guix build utils)'
comment because it's quite a bit different now.

* gnu/build/activation.scm (verify-not-symbolic): Delete.
(mkdir-p/perms): Rewrite in terms of 'openat'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: Id2f5bcbb903283afd45f6109190210d02eb383c7
 2024-09-06 11:46:26 +02:00
David Elsing
571c605f17
gnu: python-pytorch-lightning: Update to commit 2064887. 
* gnu/packages/machine-learning.scm (python-pytorch-lightning): Update to
commit 2064887.
[source]: Update URL.
[arguments]<#:tests-flags>: Skip additional failing tests.
<#:phases>: Adjust 'patch-version-detection' phase.
 2024-09-06 11:46:26 +02:00
David Elsing
77f59d1458
gnu: python-torchmetrics: Update to 1.4.1. 
* gnu/packages/machine-learning.scm (python-torchmetrics): Update to 1.4.1.
[source]: Switch to GitHub repository.
[arguments]: New field.
[propagated-inputs]: Add python-lightning-utilities.
[home-page]: Update URL.
 2024-09-06 11:46:26 +02:00
David Elsing
e4b99a7918
gnu: python-lightning-utilities: Update to 0.11.6. 
* gnu/packages/machine-learning.scm (python-lightning-utilities): Update to
0.11.6.
[source] Adjust URI.
[build-system]: Move to pyproject-build-system.
 2024-09-06 11:46:25 +02:00
David Elsing
a9e4ce6a58
gnu: python-torchvision: Update to 0.19.0. 
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.19.0.
[arguments]: Add 'setenv' phase for finding libjpeg-turbo.
[inputs]: Add ffmpeg.
 2024-09-06 11:46:25 +02:00
David Elsing
b44b2e346c
gnu: python-pytorch: Update to 2.4.0. 
This also updates the qnnpack-pytorch package.

* gnu/packages/machine-learning.scm (%python-pytorch-version): Set to 2.4.0.
(%python-pytorch-src): Adjust hash accordingly.
[source]: Remove obsolete file deletions in snippet.
(python-pytorch)[arguments]<#:phases>: Disable telemetry and set Python
install directory.  Remove obsolete USE_FFMPEG, USE_OPENCV and
USE_PYTORCH_QNNPACK environment variables.
[native-inputs]: Remove python-typing-extensions.
[inputs]: Add brotli, cpp-httplib and zlib.  Remove qnnpack.  Use oneapi-dnnl,
qnnpack-pytorch and xnnpack for all systems.
[propagated-inputs]: Add onnx and python-typing-extensions.  Use cpuinfo for
all systems.
[supported-systems]: New field.
(python-pytorch-for-r-torch)[inputs]: Add qnnpack.
* gnu/packages/patches/python-pytorch-fix-codegen.patch: Adjust patch.
* gnu/packages/patches/python-pytorch-runpath.patch: Adjust patch.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust patch.
* gnu/packages/patches/python-pytorch-without-kineto.patch: Adjust patch.
 2024-09-06 11:46:25 +02:00
David Elsing
87fd4d217c
gnu: cpp-httplib: Update to 0.16.0. 
* gnu/packages/cpp.scm (cpp-httplib): Update to 0.16.0.
 2024-09-06 11:46:25 +02:00
David Elsing
21bacce230
gnu: gloo: Update to commit 81925d1. 
* gnu/packages/machine-learning.scm (gloo): Update to commit 81925d1.
[arguments]: Add -DCMAKE_CXX_STANDARD=17 to #:configure-flags.
[supported-systems]: New field.
 2024-09-06 11:46:25 +02:00
David Elsing
73302e3cae
gnu: onnx-optimizer: Update to 0.3.19. 
* gnu/packages/machine-learning.scm (onnx-optimizer): Update to 0.3.19.
* gnu/packages/patches/onnx-optimizer-system-library.patch: Adjust patch.

Co-authored-by: Andy Tai <atai@atai.org>
 2024-09-06 11:46:25 +02:00
David Elsing
595cc594b6
gnu: onnx: Update to 1.16.2. 
* gnu/packages/machine-learning.scm (onnx): Update to 1.16.2.
[source]: Remove patch.
[build-system]: Move to pyproject-build-system.
[arguments]<#:tests?>: Disable for systems where python-nbval is not
supported.
<#:phases>: Remove 'relax-requirements' phase.  Pass "-DONNX_BUILD_TESTS" to
CMake depending on tests?.
[native-inputs]: Add python-fb-re2 and python-parameterized-next.  Remove
python-nbval on unsupported systems.
* gnu/packages/patches/onnx-shared-libraries.patch: Adjust patch.
* gnu/packages/patches/onnx-skip-model-downloads.patch: Adjust patch.
* gnu/packages/patches/onnx-use-system-googletest.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Co-authored-by: Andy Tai <atai@atai.org>
 2024-09-06 11:46:25 +02:00
David Elsing
852c75a125
gnu: Remove onnx-for-torch2. 
* gnu/packages/machine-learning.scm (onnx-for-torch2): Delete variable.
 2024-09-06 11:46:25 +02:00
David Elsing
95cec3af47
gnu: Remove onnx-optimizer-for-torch2. 
* gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): Delete variable.
 2024-09-06 11:46:24 +02:00
David Elsing
8f6919f252
gnu: Add python-parameterized-next. 
* gnu/packages/check.scm (python-parameterized-next): New variable.
 2024-09-06 11:46:24 +02:00
David Elsing
8349d30806
gnu: python-nbval: Update to 0.11.0. 
* gnu/packages/python-check.scm (python-nbval): Update to 0.11.0.
[arguments]<#:phases>: Adjust 'check' phase.
[native-inputs]: Remove python-pytest.
[propagated-inputs]: Add python-coverage and python-pytest.  Remove
python-six.
 2024-09-06 11:46:24 +02:00
David Elsing
e85b3fc595
gnu: Add xnnpack-for-r-torch. 
* gnu/packages/machine-learning.scm (xnnpack-for-r-torch): New variable.
(xnnpack)[inputs]: Use xnnpack-for-r-torch instead of xnnpack.
 2024-09-06 11:46:24 +02:00
David Elsing
f1d0626605
gnu: xnnpack: Update to commit 08f1489. 
More tests fail when building the shared library, so they are disabled.  The
scripts to generate the autogenerated files run all commands at once, so they
are converted to Makefiles first.

* gnu/packages/machine-learning.scm (xnnpack): Update to commit 08f1489.
[source]: Remove patch.  Adjust snippet.
[arguments]<#:configure-flags>: Add "-DXNNPACK_BUILD_TESTS=OFF".
<#:tests?>: Disable tests.
<#:phases>: Adjust 'fix-cmake' phase.  Convert code generation scripts to
Makefiles and run them.  Run different missing scripts.
* gnu/packages/patches/xnnpack-remove-broken-tests.patch: Remove file.
* gnu/packages/patches/xnnpack-system-libraries.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2024-09-06 11:46:24 +02:00
David Elsing
e943d9ad53
gnu: fbgemm: Update to 0.7.0. 
* gnu/packages/machine-learning.scm (fbgemm): Update to 0.7.0.
 2024-09-06 11:46:24 +02:00
David Elsing
d433001154
gnu: oneapi-dnnl: Update to 3.5.3. 
* gnu/packages/machine-learning.scm (oneapi-dnnl): Update to 3.5.3.
 2024-09-06 11:46:24 +02:00
David Elsing
cf468ebd38
gnu: nnpack: Depend on python-peachpy only for x86_64. 
* gnu/packages/machine-learning.scm (nnpack)[native-inputs]: Provide
python-peachpy only when 'target-x86-64?'.
 2024-09-06 11:46:23 +02:00
David Elsing
e5bf0cfa97
gnu: cpuinfo: Update to commit 05332fd. 
Also disable tests on aarch64, because they fail in the build container.

* gnu/packages/parallel.scm (cpuinfo): Update to commit 05332fd.
[arguments]<#:tests?>: Disable on aarch64.
[supported-systems]: Remove field.
 2024-09-06 11:46:23 +02:00