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Author SHA1 Message Date
Ricardo Wurmus
d1979fe4bb
gnu: r-treeio: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.2.
 2023-07-17 14:55:07 +02:00
Ricardo Wurmus
6f9894d63c
gnu: r-affycomp: Update to 1.76.1. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.1.
 2023-07-17 14:55:07 +02:00
Ricardo Wurmus
ed58e991f5
gnu: r-puniform: Update to 0.2.6. 
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
a450a5aafa
gnu: r-clubsandwich: Update to 0.5.9. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
7d6bdd1c8a
gnu: r-matrixmodels: Update to 0.5-2. 
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
b5fede2809
gnu: r-deoptimr: Update to 1.1-0. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
f96c109be9
gnu: r-mgcv: Update to 1.9-0. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
8029b180bd
gnu: r-ggh4x: Update to 0.2.5. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.5.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
a28d88e847
gnu: r-stars: Update to 0.6-2. 
* gnu/packages/cran.scm (r-stars): Update to 0.6-2.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
f702efa97e
gnu: r-seewave: Update to 2.2.1. 
* gnu/packages/cran.scm (r-seewave): Update to 2.2.1.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
4a6843b3b3
gnu: r-sccore: Update to 1.0.4. 
* gnu/packages/cran.scm (r-sccore): Update to 1.0.4.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
2824b8949d
gnu: r-sf: Update to 1.0-14. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-14.
[inputs]: Add curl, openssh, openssl, pcre2, and zlib.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
fa0788a9b4
gnu: r-longdat: Update to 1.1.2. 
* gnu/packages/cran.scm (r-longdat): Update to 1.1.2.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
b071105584
gnu: r-tidytree: Update to 0.4.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.4.4.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
2f5903c51a
gnu: r-rcppalgos: Update to 2.8.0. 
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.8.0.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
892f9dba8a
gnu: r-doby: Update to 4.6.17. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.17.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
b23bfb6de5
gnu: r-ctrdata: Update to 1.14.0. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
a20818b3e8
gnu: r-rcppspdlog: Update to 0.0.14. 
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.14.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
ecb9e3e180
gnu: r-gensa: Update to 1.1.9. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.9.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
01be464993
gnu: r-sass: Update to 0.4.7. 
* gnu/packages/cran.scm (r-sass): Update to 0.4.7.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
8ed1249d65
gnu: r-ggpp: Update to 0.5.3. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.3.
 2023-07-17 14:19:51 +02:00
Ricardo Wurmus
c30a4577a8
gnu: r-babelwhale: Update to 1.2.0. 
* gnu/packages/cran.scm (r-babelwhale): Update to 1.2.0.
 2023-07-17 14:19:51 +02:00
Ricardo Wurmus
af6b542954
gnu: r-openssl: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0.
[properties]: Add hint to keep openssl input.
[inputs]: Add zlib.
 2023-07-17 14:18:43 +02:00
Ricardo Wurmus
eda2c23874
scripts/refresh: Remove column from spec line before sorting. 
We want to sort by file and line number, but the column number messes
everything up.

This is a follow-up to commit b43841c124.

* guix/scripts/refresh.scm (guix-refresh): Trim the digits on the right of the
location string before comparing them.
 2023-07-17 13:51:54 +02:00
Christopher Baines
ad08f9331f
gnu: simulation: Fix duplicate open-simulation-interface. 
Give the python variant a different name, and fix the build.

* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
 2023-07-17 09:14:47 +01:00
Christopher Baines
22c7ac4109
gnu: gnome: Hide devhelp-with-libsoup2. 
To avoid the ambiguous package specification.

* gnu/packages/gnome.scm (devhelp-with-libsoup2): Hide package.
 2023-07-17 09:07:34 +01:00
Christopher Baines
54a74d35e6
gnu: Hide python-bcbio-gff/biopython-1.73. 
To avoid the ambiguous package specification.

* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): Hide
package.
 2023-07-17 09:06:34 +01:00
Christopher Baines
728ed83188
gnu: Remove harfbuzz-5. 
As this package definition is redundant, harfbuzz is version 5.3.1.

* gnu/packages/gtk.scm (harfbuzz-5): Remove.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Replace harfbuzz-5 with
harfbuzz.
* gnu/packages/qt.scm (qtwebengine)[inputs]: Remove redundant replace.
 2023-07-17 09:05:03 +01:00
Christopher Baines
c0d3d494cd
teams: Change email address for Christopher Baines. 
This will allow me to automatically detect when I'm getting emails related to
Guix teams.

* etc/teams.scm.in: Change email address for Christopher Baines.
 2023-07-17 08:52:49 +01:00
Christopher Baines
36cbd2654e
gnu: ghc-8.10: Fix build on i686-linux. 
As one profiling test fails very repeatedly on the bordeaux build farm, but
ghc did seem to build successfully on other machines.

* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Don't run the T11627a
profiling test on i686-linux.
 2023-07-17 08:47:10 +01:00
Danny Milosavljevic
3755941f03
gnu: jbr: Use Jetbrains' configure-flags. 
* gnu/packages/java.scm (jbr17)[arguments]<#:configure-flags>: Use Jetbrains'
configure flags.
 2023-07-17 00:14:20 +02:00
Guillaume Le Vaillant
796c823a0d
gnu: welle-io: Add missing input. 
* gnu/packages/radio.scm (welle-io)[inputs]: Add qtquickcontrols-5.
 2023-07-16 11:05:24 +02:00
Ricardo Wurmus
e767fe2ddc
gnu: libnode: Delete extra phase. 
This is a follow-up to commit 5dc2a88f99.

* gnu/packages/node.scm (libnode)[arguments]: Remove phase
'ignore-number-of-hardlinks.
 2023-07-16 10:48:26 +02:00
Ricardo Wurmus
8d2a016f1b
gnu: r-with-tests: Update to 4.3.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
 2023-07-16 10:48:00 +02:00
Ricardo Wurmus
ff0d34a29b
gnu: r-with-tests: Fix reference to grep. 
detectCores.R fails to return the number of cores when running R in a
container without grep.

Reported-by: Jonas Freimuth.

* gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to
grep and wc in detectCores.R.
[inputs]: Add grep.
 2023-07-16 10:48:00 +02:00
Liliana Marie Prikler
093e920418
gnu: capypdf: Update to 0.4.0. 
* gnu/packages/pdf.scm (capypdf): Update to 0.4.0.
 2023-07-16 09:18:09 +02:00
Lilah Tascheter
45491ea8da
gnu: mesa: Fix Vulkan on older Intel GPUs. 
Mesa split the Vulkan intel driver into two: intel and intel_hasvk.
Enables intel_hasvk so vulkan functions on older intel GPUs again, and
swrast for lavapipe as a fallback.

* gnu/packages/gl.scm (mesa-vulkan-hasvk): New variable.
(mesa): Graft with mesa-vulkan-hasvk.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-07-16 09:18:09 +02:00
Ahmad Draidi
1ef314fa58
gnu: Add emacs-weyland-yutani-theme. 
* gnu/packages/emacs-xyz.scm (emacs-weyland-yutani-theme): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-07-16 09:18:09 +02:00
Brian Cully
c6dad0178a
gnu: Add emacs-elfeed-goodies 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-goodies): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-07-16 09:18:09 +02:00
Brian Cully
c8a6ec7963
gnu: Add emacs-popwin. 
* gnu/packages/emacs-xyz.scm (emacs-popwin): new variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-07-16 09:18:08 +02:00
Liliana Marie Prikler
cb46336c40
gnu: Add python-ovh. 
* gnu/packages/python-web.scm (python-ovh): New variable.
 2023-07-16 07:58:51 +02:00
Tobias Geerinckx-Rice
d08bd19de0
gnu: wimlib: Update to 1.14.1. 
* gnu/packages/backup.scm (wimlib): Update to 1.14.1.
[inputs]: Upgrade fuse to fuse-3.
 2023-07-09 02:00:10 +02:00
Tobias Geerinckx-Rice
df6ea7416f
gnu: qpwgraph: Update to 0.4.5. 
* gnu/packages/audio.scm (qpwgraph): Update to 0.4.5.
 2023-07-09 02:00:10 +02:00
Tobias Geerinckx-Rice
d00be57254
gnu: rdiff-backup: Update to 2.2.5. 
* gnu/packages/backup.scm (rdiff-backup): Update to 2.2.5.
 2023-07-09 02:00:09 +02:00
Tobias Geerinckx-Rice
e286fe4a68
gnu: snapraid: Update to 12.2. 
* gnu/packages/backup.scm (snapraid): Update to 12.2.
 2023-07-09 02:00:09 +02:00
Tobias Geerinckx-Rice
8b96a20ff3
gnu: oath-toolkit: Mark up description. 
* gnu/packages/authentication.scm (oath-toolkit)[synopsis, description]:
Use @acronym{}.
 2023-07-09 02:00:09 +02:00
Tobias Geerinckx-Rice
aa576321f2
gnu: oath-toolkit: Update to 2.6.9. 
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.9.
[source]: Remove patch.
* gnu/packages/patches/oath-toolkit-xmlsec-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-07-09 02:00:09 +02:00
Tobias Geerinckx-Rice
86aa9e23d8
gnu: stoken: Use HTTPS home page. 
* gnu/packages/crypto.scm (stoken)[home-page]: Use HTTPS.
 2023-07-09 02:00:09 +02:00
Tobias Geerinckx-Rice
ab4f866902
gnu: Remove top-level (guix build utils) import. 
* gnu/packages/game-development.scm: Don't import (guix build utils) here.
 2023-07-09 02:00:09 +02:00
Tobias Geerinckx-Rice
920d12624f
gnu: signify: Use G-expressions. 
* gnu/packages/crypto.scm (signify)[arguments]:
Rewrite as G-expressions.
 2023-07-09 02:00:09 +02:00