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Author SHA1 Message Date
Kyle Meyer
d2984784fd
gnu: ghc-http-client: Update to 0.7.11. 
* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11.
[inputs]: Add ghc-iproute.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:25 -04:00
Mădălin Ionel Patrașcu
591007f7d1
gnu: r-signac: Update to 1.6.0-2.458e647. 
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647.
[propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings,
r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-03-29 17:40:17 +02:00
Ricardo Wurmus
977a33139e
gnu: plink-ng: Update to 2.00a3-20220315. 
* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315.
 2022-03-29 15:33:55 +02:00
Mădălin Ionel Patrașcu
d710f01957
gnu: Add r-cytobackbone. 
* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-03-29 14:03:44 +02:00
Ricardo Wurmus
6d5964e804
gnu: pigx-sars-cov2-ww: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5.
[source]: Remove patch.
[arguments]: Disable tests.
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-29 13:52:16 +02:00
Ricardo Wurmus
847acc3206
gnu: pigx-rnaseq: Update to 0.0.20. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20.
[source]: Remove patch.
[inputs]: Add megadepth.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-29 13:52:16 +02:00
Efraim Flashner
3b0c9e4c20
gnu: kpeoplevcard: Use mirror URI. 
* gnu/packages/kde-pim.scm (kpeoplevcard)[source]: Use kde mirror URI.
 2022-03-29 14:43:21 +03:00
Efraim Flashner
d9710380a4
gnu: pulseaudio-qt: Use mirror URI. 
* gnu/packages/kde-frameworks.scm (pulseaudio-qt)[source]: Use kde
mirror URI.
 2022-03-29 14:43:20 +03:00
Efraim Flashner
67213a2759
download: Use https for main KDE source. 
* guix/download.scm (%mirrors)[kde]: Use https URIs for main KDE mirrors.
* tests/lint.scm ("mirror-url: kde suggestion"): New test.
 2022-03-29 14:43:14 +03:00
Luis Henrique Gomes Higino
53b04339fe
gnu: neovim: Update to 0.6.1. 
* gnu/packages/vim.scm (neovim): Update to 0.6.1.

Build neovim with LuaJIT in the supported platforms.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:56:52 +02:00
Luis Henrique Gomes Higino
1e2a25579c
gnu: Add tree-sitter. 
* gnu/packages/text-editors.scm (tree-sitter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:56:49 +02:00
Feng Shu
5cabe24e56
gnu: Add xfce4-dict. 
* gnu/packages/xfce.scm (xfce4-dict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:36:15 +02:00
jgart
ddfebdab86
gnu: poezio: Update to 0.13.2. 
* gnu/packages/messaging.scm (poezio): Update to 0.13.2.
[arguments]: Remove trailing boolean and use new style.
[inputs]: Remove unused python input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:30:25 +02:00
Philippe SWARTVAGHER
39b27a17ec
gnu: openmpi: Update to 4.1.2 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.2

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:27:21 +02:00
Ludovic Courtès
2ae2a15b07
gnu: slurm: Install libpmi2. 
* gnu/packages/parallel.scm (slurm)[source](snippet): Let PMI2 through.
[arguments]: In phase 'install-libpmi', install "contribs/pmi2".
[license]: Add 'non-copyleft'.
 2022-03-29 11:26:58 +02:00
jgart
779acb0ba1
gnu: mercury: Remove trailing #T from phases and snippet. 
* gnu/packages/mercury.scm (mercury)[arguments]<#:phases>: Remove trailing #T.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 11:17:46 +02:00
jgart
c116376542
gnu: python-livereload: Update to 2.6.3. 
* gnu/packages/python-web.scm (python-livereload): Update to 2.6.3.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:59:07 +02:00
jgart
6d0d176580
gnu: solfege: Remove trailing booleans. 
* gnu/packages/music.scm (solfege): Remove trailing booleans.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:56:33 +02:00
jgart
a1c11cc652
gnu: python-port-for: Remove trailing boolean. 
* gnu/packages/python-web.scm (python-port-for)[arguments]: Remove trailing
boolean from lambda function.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:55:02 +02:00
Brian Kubisiak
db7b8d1c9a
gnu: dnsmasq: Fix cross-compilation. 
* gnu/packages/dns.scm (dnsmasq)[arguments]: Use PKG-CONFIG-FOR-TARGET.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:52:45 +02:00
Efraim Flashner
b103d8e490
gnu: munge: Fix cross-compiling. 
* gnu/packages/admin.scm (munge)[arguments]: Add configure-flag to set
path to libgcrypt prefix.  Add configure flags when cross-compiling to
assume support for pipes.
 2022-03-28 21:34:09 +03:00
Efraim Flashner
bf0389a380
gnu: freeipmi: Fix cross-compiling. 
* gnu/packages/freeipmi.scm (freeipmi)[arguments]: Assume support for
/dev/random and /dev/urandom when cross compiling.
 2022-03-28 21:34:08 +03:00
Efraim Flashner
f24ddb1e90
gnu: sdsl-lite: Adjust inputs. 
* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Move
libdivsufsort from here ...
[propagated-inputs]: ... to here.
 2022-03-28 21:34:08 +03:00
Efraim Flashner
abd8286480
gnu: rdma-core: Fix cross-compiling. 
* gnu/packages/linux.scm (rdma-core)[arguments]: Add configure-flag when
cross-compiling to find pkg-config.
 2022-03-28 21:34:04 +03:00
Maxim Cournoyer
e91a525858
gnu: ansible: Use GUIX_PYTHONPATH in the search path specification. 
* gnu/packages/admin.scm (ansible)[native-search-paths]: Use GUIX_PYTHONPATH.
 2022-03-28 13:52:45 -04:00
Maxim Cournoyer
7d136be00f
gnu: openboardview: Do not recursively clone source. 
This is a follow up to commit ad85ca0977.

* gnu/packages/electronics.scm (openboardview)
[source]<git-reference>: Delete the recursive? field.
 2022-03-28 13:52:45 -04:00
Mădălin Ionel Patrașcu
0a5c2816ea
gnu: Add r-cycombine. 
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
 2022-03-28 17:04:29 +02:00
Ricardo Wurmus
8e994ea512
gnu: Add r-homologene. 
* gnu/packages/cran.scm (r-homologene): New variable.
 2022-03-28 15:22:49 +02:00
Efraim Flashner
738da660ff
gnu: zig: Remove unneeded patch. 
* gnu/packages/zig.scm (zig)[source]: Remove one patch.
* gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-28 10:31:54 +03:00
Efraim Flashner
58bc976b5b
gnu: gitolite: Add bash-minimal. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Remove
trailing #t.
[inputs]: Add bash-minimal.
 2022-03-28 10:07:02 +03:00
Efraim Flashner
6d780dc8bf
gnu: gitolite: Don't hardcode path to svnserve. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Adjust custom
'patch-source phase to search for svnserve in $PATH.
 2022-03-28 10:04:03 +03:00
Pier-Hugues Pellerin
fff27ded10
gnu: Go: Update to 1.17.8 [security fixes]. 
Go 1.17.8 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the crypto/x509 and net packages.  See the Go 1.17.8 milestone[1] on the
upstream issue tracker for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[1] https://github.com/golang/go/issues?q=milestone%3AGo1.17.8+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.17): Update to 1.17.8.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-27 23:11:18 -04:00
Pier-Hugues Pellerin
8731ed8eae
gnu: Go 1.16: Update to 1.16.15 [security fixes]. 
Go 1.16.15 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the net package. See the Go 1.16.15 milestone[1] on the upstream issue tracker
for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[2] https://github.com/golang/go/issues?q=milestone%3AGo1.16.15+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.16): Update to 1.16.15.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-27 23:11:18 -04:00
Liliana Marie Prikler
2344fb1097
gnu: mcomix: Install messages. 
* gnu/packages/image-viewer.scm (mcomix)[install-data]: Also install messages
subdirectory.
 2022-03-27 09:49:02 +02:00
Leo Famulari
943d4b775b
gnu: linux-libre: Add linux-libre 5.17. 
* gnu/packages/linux.scm (linux-libre-5.17-version,
linux-libre-5.17-gnu-revision, deblob-scripts-5.17,
linux-libre-5.17-pristine-source, linux-libre-5.17-source,
linux-libre-headers-5.17, linux-libre-5.17): New variables.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
 2022-03-26 17:59:57 -04:00
Leo Famulari
50ccffb89e
gnu: Borg: Update to 1.2.0. 
* gnu/packages/backup.scm (borg): Update to 1.2.0.
[source]: Adjust the list of Cython files to rebuild. Remove an obsolete
substitution. Delete the bundled xxhash. Blake2 is no longer bundled.
[native-inputs]: Add python-dateutil.
[inputs]: Add xxhash. Add python-msgpack-1.2. Remove libb2.
[arguments]: Export BORG_LIBXXHASH_PREFIX to ensure the build script can find
xxhash. Adjust the list of skipped tests and make the custom 'check' phase honor
tests?. Install some more documentation.
 2022-03-26 17:53:37 -04:00
Leo Famulari
b9e01b7516
gnu: Add python-msgpack-1.0.2. 
* gnu/packages/python-xyz.scm (python-msgpack-1.0.2): New variable.
 2022-03-26 17:53:30 -04:00
Liliana Marie Prikler
ff4585d147
gnu: mcomix: Wrap missing paths. 
* gnu/packages/image-viewers.scm (mcomix)[inputs]: Add gtk+.
[arguments]<#:imported-modules,#:modules>: New arguments.
<#:phases>: Add ‘glib-or-gtk-wrap’ and ‘gi-wrap’.
 2022-03-26 08:52:40 +01:00
Liliana Marie Prikler
8358ad36c6
gnu: mcomix: Update to 2.0.1. 
* gnu/packages/image-viewers.scm (mcomix): Update to 2.0.1.
[source]: Use sourceforge once again.
[inputs]: Add ‘python’.
[arguments]: Convert to a list of G-Expressions.
<#:tests?>: Drop.
<#:phases>: Rename ‘configure’ to ‘patch-sources’.  Also fix an assertion
error in "mcomix/image_tools.py".
No longer replace ‘build’ or ‘install’.  Add ‘install-data’ phase after
‘install’.  Use (this-package-input) to refer to the python input.
 2022-03-26 08:52:40 +01:00
Feng Shu
fc9ac2ac64
gnu: Add xfdashboard. 
* gnu/packages/xfce.scm (xfdashboard): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-03-26 11:39:00 +08:00
SeerLite
2e55a4c6b9
services: xorg: Remove xf86-input-synaptics from %default-xorg-modules. 
Fixes <https://issues.guix.gnu.org/35450>.

This driver isn't intended to be installed by default as it takes
precedence over the recommended xf86-input-libinput.

* gnu/services/xorg.scm (%default-xorg-modules): Remove
  xf86-input-synaptics.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-25 18:42:14 +01:00
fesoj000
cabda1197e
gnu: nftables: Enable json output. 
* gnu/packages/linux.scm (nftables)[inputs]: Add jansson.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
fesoj000
32a5a1cc96
gnu: nftables: Enable build of manpages. 
* gnu/packages/linux.scm (nftables)[native-inputs]: Add docbook2x.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Feng Shu
1f46534646
gnu: Add gigolo. 
* gnu/packages/xfce.scm (gigolo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Imran Iqbal
f2bbe73b81
gnu: Add curlie. 
* gnu/packages/curl.scm (curlie): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
raingloom
72d2aeacaa
gnu: akku: Update to 1.1.0. 
* gnu/packages/package-management.scm (akku): Update to 1.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Philippe SWARTVAGHER
2f7a6eaec9
gnu: hwloc: Update to 2.7.1. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Guillaume Le Vaillant
cce693a4a9
gnu: txr: Update to 274. 
* gnu/packages/lisp.scm (txr): Update to 274.
 2022-03-25 11:20:33 +01:00
Felix Gruber
87238a0b2c
gnu: postgis: Update to 3.2.1. 
* gnu/packages/geo.scm (postgis): Update to 3.2.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-03-25 11:15:09 +01:00
jgart
034b7b5db6
gnu: cl-clack: Update to 2.0.0-2.6fd0279. 
* gnu/packages/lisp-xyz.scm (sbcl-clack): Update to 2.0.0-2.6fd0279.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-03-25 11:10:56 +01:00