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156 commits

Author SHA1 Message Date
Guillaume Le Vaillant
5dc04da4df
gnu: sbcl-cl-random-forest: Remove obsolete fix. 
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest)[arguments]: Remove
  'add-sb-cltl2-dependency' phase.
 2020-06-07 10:46:58 +02:00
Edouard Klein
32ba87c14f
gnu: python-prompt-toolkit: Update to 3.0.5. 
* gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Pin
implicit python-prompt-toolkit dependency to version 2.
* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Pin implicit python-prompt-toolkit dependency to version 2.
(python-ipywidgets)[propagated-inputs]: Pin implicit python-prompt-toolkit
dependency to version 2.
(python-jupyter-console)[propagated-inputs]: Pin explicit
python-prompt-toolkit dependency to version 2.
(python-prompt-toolkit): Update to version 3.0.5.
[propagated-inputs]: Remove PYTHON-SIX and PYTHON-PYGMENTS.
[home-page]: Adjust to current.
(python-prompt-toolkit-2): New variable.
(prompt-toolkit-2-instead-of-prompt-toolkit): New variable.
(python2-prompt-toolkit): Keep at version 2.
(python-prompt-toolkit-1): Inherit from version 2.

Signed-off-by: Marius Bakke <marius@gnu.org>
 2020-05-30 16:41:39 +02:00
Edouard Klein
bcbd63407e
gnu: python-iml: Move nose from propagated to native input. 
* gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Move
PYTHON-NOSE ...
[native-inputs]: ... here.

Signed-off-by: Marius Bakke <marius@gnu.org>
 2020-05-30 16:41:39 +02:00
Edouard Klein
dd003125f7
gnu: python-iml: Use HTTPS home page. 
* gnu/packages/machine-learning.scm (python-iml)[home-page]: s/http/https/

Signed-off-by: Marius Bakke <marius@gnu.org>
 2020-05-26 00:56:19 +02:00
Efraim Flashner
0b96705889
gnu: tensorflow: Fix build with python-3.8. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Also import
python-version from python-build-system. Adjust 'python3.7-compatibility
to also add python-3.8 compatibility. Adjust 'install-python to not
hardcode the python version.
 2020-05-25 14:20:53 +03:00
Marius Bakke
8bf8cd9b85
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/backup.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/guile.scm
	gnu/packages/lisp.scm
	gnu/packages/openldap.scm
	gnu/packages/package-management.scm
	gnu/packages/web.scm
	gnu/packages/xorg.scm
 2020-04-30 23:47:49 +02:00
Ricardo Wurmus
46d07f8472
gnu: kaldi-gstreamer-server: Fix bug. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Patch
master_server.py before build.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
cb44af24c8
gnu: kaldi-gstreamer-server: Use Tornado 6. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Replace
python-tornado with python-tornado-6.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
1228c2abcf
gnu: kaldi-gstreamer-server: Update to 0-2.f68cab4. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-2.f68cab4.
[inputs]: Replace python-2 with python-wrapper, python2-pygobject with
python-pygobject, python2-pyyaml with python-pyyaml, and python2-tornado with
python-tornado; remove python2-ws4py-for-kaldi-gstreamer-server and
python2-futures.
 2020-04-29 13:29:16 +02:00
Konrad Hinsen
d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-28 09:34:29 +02:00
Ricardo Wurmus
b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef. 
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
0877b74f6e
gnu: kaldi: Update to 0-2.d4791c0. 
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
 2020-04-28 08:44:04 +02:00
Roel Janssen
639ae3f20b
gnu: Add python-scikit-rebate. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
 2020-04-27 13:54:43 +02:00
Marius Bakke
fc58cb5bd2
Merge branch 'master' into core-updates 2020-04-13 20:26:21 +02:00
Vagrant Cascadian
cc24c4cb12
gnu: shogun: Fix grammar of "allows to combine" to "combines". 
* gnu/packages/machine-learning (shogun): Fix grammar.
 2020-04-12 13:35:01 -07:00
Marius Bakke
ae0badf5bb
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/admin.scm
	gnu/packages/commencement.scm
	gnu/packages/guile.scm
	gnu/packages/linux.scm
	gnu/packages/package-management.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/web.scm
 2020-03-30 12:17:33 +02:00
Efraim Flashner
4eb40497b6
gnu: vowpal-wabbit: Don't use unstable tarball. 
* gnu/packages/machine-learning.scm (vowpal-wabbit)[source]: Download
using git-fetch.
[arguments]: Add custom 'make-files-writable phase.
 2020-03-29 20:50:24 +03:00
Marius Bakke
d19b14c834
Merge branch 'master' into core-updates 2020-03-21 22:16:02 +01:00
Tobias Geerinckx-Rice
e51b34bb90
gnu: python-scikit-learn: Use HTTPS home page. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[home-page]: Use HTTPS.
 2020-03-21 20:42:50 +01:00
Marius Bakke
80a8583a6b
gnu: TensorFlow: Correct gRPC input. 
* gnu/packages/machine-learning.scm (tensorflow)[native-inputs]: Move
GRPC:STATIC ...
[inputs]: ... here.
 2020-03-21 20:17:20 +01:00
Marius Bakke
447fafe3d7
gnu: gRPC: Update to 1.27.3. 
* gnu/packages/rpc.scm (grpc): Update to 1.27.3.
[arguments]: Add "-DgRPC_ABSL_PROVIDER=package" in #:configure-flags.
[inputs]: Add ABSEIL-CPP.
(grpc-1.16.1): New public variable.
* gnu/packages/hyperledger.scm (hyperledger-iroha)[inputs]: Change from GRPC
to GRPC-1.16.
* gnu/packages/machine-learning.scm (tensorflow)[native-inputs, inputs]: Likewise.
 2020-03-21 20:17:20 +01:00
Marius Bakke
c61557b1b6
gnu: gRPC: Move to (gnu packages rpc). 
* gnu/packages/machine-learning.scm (grpc): Move to ...
* gnu/packages/rpc.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/hyperledger.scm: Adjust module imports.
 2020-03-21 12:22:22 +01:00
Marius Bakke
c4d769d359
Merge branch 'master' into core-updates 2020-03-18 19:41:08 +01:00
Marius Bakke
961d2ee269
Merge branch 'master' into core-updates 2020-03-14 13:13:40 +01:00
Tobias Geerinckx-Rice
df10a64efc
gnu: shogun: Use HTTPS home page. 
* gnu/packages/machine-learning.scm (shogun)[home-page]: Use HTTPS.
 2020-03-17 03:00:46 +01:00
Marius Bakke
382550f0be
gnu: python2-scikit-learn: Downgrade to 0.20.4. 
This is a follow-up to commit 546893c2965c8114e4d7cfe1de46c46664ec4b9e.

* gnu/packages/machine-learning.scm (python-scikit-learn)[properties]: New field.
(python2-scikit-learn)[version, source]: New fields.
 2020-03-15 15:09:06 +01:00
Efraim Flashner
d56d3ae704
gnu: grpc: Build shared libraries. 
* gnu/packages/machine-learning.scm (grpc)[outputs]: Add static.
[arguments]: Copy configure-flags from cmake-build-system. Add custom
phases 'configure-shared, 'install-shared-libraries and 'move-static-libs
to build shared libs and move static libs to their own output.
(tensorflow)[native-inputs]: Add grpc:static.
 2020-03-12 15:34:28 +02:00
Marius Bakke
50b99c90c8
Merge branch 'master' into core-updates 2020-03-10 20:50:02 +01:00
Roel Janssen
e2ca10a46f
gnu: python-umap-learn: Fix build. 
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
 2020-03-08 10:20:22 +01:00
Roel Janssen
83a483aac7
gnu: Update python-scikit-learn to 0.22.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1;
  Add python-joblib to native-inputs to run the test suite.
 2020-03-06 10:45:51 +01:00
Marius Bakke
ebb7cf9e21
Merge branch 'master' into core-updates 2020-03-04 23:16:17 +01:00
Tobias Geerinckx-Rice
62290cd45d
gnu: libsvm: Use HTTPS home page. 
* gnu/packages/machine-learning.scm (libsvm)[home-page]: Use HTTPS.
 2020-02-23 17:55:05 +01:00
Marius Bakke
52665d2b6b
Merge branch 'staging' into core-updates 2020-02-03 15:45:44 +01:00
Marius Bakke
3cb8cb6660
gnu: ghmm: Fix missing module import. 
This is a follow-up to commit 9c2563a80b.

* gnu/packages/machine-learning.scm (ghmm)[arguments]: Add #:modules.
 2020-01-26 16:30:25 +01:00
Marius Bakke
4bd428a7ce
gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'. 
* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to
LIBJPEG-TURBO.
* gnu/packages/admin.scm (testdisk)[inputs]: Likewise.
* gnu/packages/algebra.scm (giac)[inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[inputs]: Likewise.
* gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise.
* gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise.
* gnu/packages/display-managers.scm (slim)[inputs]: Likewise.
* gnu/packages/ebook.scm (fbreader)[inputs]: Likewise.
* gnu/packages/emacs.scm (emacs)[inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise.
* gnu/packages/freedesktop.scm (weston)[inputs]: Likewise.
* gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame,
eureka, ioquake3)[inputs]: Likewise.
* gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest,
fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise.
* gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise.
* gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise.
(ghostscript)[inputs, native-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise.
* gnu/packages/graphics.scm (blender, blender-2.79, openimageio,
openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise.
* gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise.
* gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise.
* gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl,
insight-toolkit)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage,
vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise.
* gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise.
* gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11,
openjdk12)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise.
* gnu/packages/mate.scm (atril, eom)[inputs]: Likewise.
* gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise.
* gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise.
* gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise.
* gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin,
rawtherapee)[inputs]: Likewise.
* gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise.
* gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise.
* gnu/packages/scheme.scm (racket)[inputs]: Likewise.
* gnu/packages/scribus.scm (scribus)[inputs]: Likewise.
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise.
(guile-sdl)[native-inputs]: Likewise.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise.
* gnu/packages/upnp.scm (readymedia)[inputs]: Likewise.
* gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise.
* gnu/packages/web.scm (netsurf)[inputs]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise.
* gnu/packages/wine.scm (wine)[inputs]: Likewise.
* gnu/packages/wv.scm (wv)[inputs]: Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise.
* gnu/packages/xfce.scm (tumbler)[inputs]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise.
* gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
 2020-01-22 22:12:34 +01:00
Brett Gilio
5e42d19781
gnu: Add python-umap-learn. 
* gnu/packages/machine-learning.scm (python-umap-learn): New variable.
 2019-12-23 17:28:46 -06:00
Pierre Neidhardt
88f06fd015
gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
 2019-12-05 16:23:06 +01:00
Tobias Geerinckx-Rice
d9544d91a6
Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm." 
This reverts commit ac1ee30f4f, which
still breaks ‘guix pull’.
 2019-12-05 15:38:52 +01:00
Pierre Neidhardt
ac1ee30f4f
gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
 2019-12-05 13:48:47 +01:00
Ricardo Wurmus
ec1224a73b
gnu: python-scipy: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-scipy, python2-scipy): Move these from
here...
* gnu/packages/python-science.scm (python-scipy, python2-scipy): ...to here.
* gnu/packages/bioinformatics.scm, gnu/packages/machine-learning.scm,
gnu/packages/statistics.scm: Adjust module imports.
 2019-12-02 15:25:17 +01:00
Ricardo Wurmus
076527c354
Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm." 
This reverts commit abf43a67d5 as it broke "guix pull".
 2019-11-28 21:09:24 +01:00
Pierre Neidhardt
abf43a67d5
gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
 2019-11-28 19:36:12 +01:00
Giacomo Leidi
58b1328790
gnu: Add gloo. 
* gnu/packages/machine-learning.scm (gloo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-21 23:26:33 +02:00
Marius Bakke
7373eb8304
gnu: protobuf: Update to 3.10.0. 
* gnu/packages/protobuf.scm (protobuf, python-protobuf): Update to 3.10.0.
(protobuf-next, python-protobuf-next): Rename to ....
(protobuf-3.6, python-protobuf-3.6): ... this.
(protobuf-3.5): New public variable.
* gnu/packages/machine-learning.scm (grpc)[native-inputs]: Change from
PROTOBUF-NEXT to PROTOBUF.
(tensorflow)[native-inputs, propagated-inputs]: Adjust for renamed PROTOBUF-NEXT.
* gnu/packages/robotics.scm (aseba)[inputs]: Change from PROTOBUF to PROTOBUF-3.5.
* gnu/packages/telephony.scm (mumble)[inputs]: Likewise.
 2019-10-21 00:26:14 +02:00
Marius Bakke
0effc65cc9
gnu: gRPC: Update description. 
* gnu/packages/machine-learning.scm (grpc)[description]: Remove "open source".
 2019-10-12 18:39:57 +02:00
Marius Bakke
bd2bd80df8
gnu: FANN: Update description. 
* gnu/packages/machine-learning.scm (fann)[description]: Remove "open source".
 2019-10-12 18:39:56 +02:00
Jesse Gibbons
d7e29a2b26
gnu: python-scikit-learn: Update to 0.20.4. 
Fixes <https://bugs.gnu.org/37705>.

* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.4.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-10-12 13:33:33 +02:00
Ricardo Wurmus
e08902d3cb
Merge branch 'master' into core-updates 2019-10-06 22:02:20 +02:00
Guillaume Le Vaillant
5a65fede0b
gnu: Add cl-random-forest. 
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): New variables.
 2019-10-06 14:37:54 +02:00
Guillaume Le Vaillant
7a15aab836
gnu: Add cl-online-learning. 
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning,
  cl-online-learning, ecl-cl-online-learning): New variables.
 2019-10-06 14:28:55 +02:00